Information report for AT5G39740
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Characterization of a radish introgression carrying the Ogura fertility restorer gene Rfo in rapeseed, using the Arabidopsis genome sequence and radish genetic mapping. DOI: 10.1007/s00122-003-1381-2 ; PMID: 12942173
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Overexpression of AtCpNifS enhances selenium tolerance and accumulation in Arabidopsis. DOI: 10.1104/pp.105.068684 ; PMID: 16244144
- Biosynthesis of cellulose-enriched tension wood in Populus: global analysis of transcripts and metabolites identifies biochemical and developmental regulators in secondary wall biosynthesis. DOI: 10.1111/j.1365-313X.2005.02584.x ; PMID: 16367961
- EST database for early flower development in California poppy (Eschscholzia californica Cham., Papaveraceae) tags over 6,000 genes from a basal eudicot. DOI: 10.1007/s11103-006-9025-y ; PMID: 16915518
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Ribosomal proteins promote leaf adaxial identity. DOI: 10.1242/dev.017913 ; PMID: 18305007
- Berberine enhances defects in the establishment of leaf polarity in asymmetric leaves1 and asymmetric leaves2 of Arabidopsis thaliana. DOI: 10.1007/s11103-012-9929-7 ; PMID: 22684430
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. DOI: 10.1091/mbc.e04-09-0791 ; PMID: 15496452
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A178UJU5
- EMBL: CACSHJ010000096, LR881470, LUHQ01000005
- AlphaFoldDB: A0A178UJU5
- EnsemblPlants: AT5G39740.1, AT5G39740.2
- Gramene: AT5G39740.1, AT5G39740.2
- KEGG: ath:AT5G39740
- Orthologous matrix: CQIASAH
- ExpressionAtlas: AT5G39740
- InterPro: IPR005485, IPR025607
- PANTHER: PTHR23410, PTHR23410:SF35
- SUPFAM: SSF53137
- Gene3D: 3.30.420.100
- OrthoDB: A0A178UJU5
- SWISS-MODEL: A0A178UJU5
- Conserved Domain Database: cd00432
Sequences
cDNA Sequence
- >AT5G39740.1
CTCTAGGGTTTTGTCTTATAAGCTTGATCTCGCATTAGGTCTTTGCGCCTCTTGCCATCTTTTGTCACTCATCTTCACAGGAAACAATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTGTGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATGATGAGTACGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTGTTTGGTGCACTCAAGGGAGCTTTGGACGGAGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATCTACGGTGGCCACGTCTCAAACTACATGAAGCTGTTGGGGGAAGATGAGCCGGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCCAACCATAAGAAAACCGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTACGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAAACGGAGCAGGTGGTGATGATGATGATGAGGATGATGAAGAGTAAATCACCAATCAAGCCTTCTTTGTCTCATGCCTCTAGTAGCTTTTTACTTATTTATTTTCAGACTAAAACACTCAGTTTTTGTTTTCACATTTTAGTTGCGTTTGAAGATTTTGAATTCGAGGATATGTTTTGTTTGAAGAATTTATTATCATCTCTTATTACACCATCGTCATTTTCAGGAATTTGCCTGTCAATAGTTAGATTTTATGCGTAGTGTGGTTTTAGTGCTTGTGGAAAATGGGGATTCTTGAAGTAATGAAAGTGATCATTAGTGATGTCTTCTGATCGGGTGCTTGATACAAATTCTAACTTGATGTTACTTAATAGAAAAGATTATCTTCGTAAAG - >AT5G39740.2
CTCTAGGGTTTTGTCTTATAAGCTTGATCTCGCATTAGGTCTTTGCGCCTCTTGCCATCTTTTGTCACTCATCTTCACAGGAAACAATGGTGTTTGTGAAGTCCTCCAAATCGAATGCTTACTTCAAGAGGTACCAAGTGAAGTTCAGGAGAAGGAGAGATGGGAAGACTGATTACAGGGCAAGGATCCGTCTTATCAATCAAGACAAGAACAAGTACAACACCCCTAAGTACCGTTTTGTTGTTCGATTTACCAACAAAGACATTGTGGCACAGATTGTATCTGCAAGCATAGCTGGTGACATTGTTAAAGCTTCGGCTTACGCACATGAGCTTCCTCAGTATGGACTCACTGTTGGTCTTACCAACTATGCTGCAGCTTACTGTACTGGCCTTCTTTTGGCTCGTCGTGTTCTGAAAATGCTGGAAATGGATGATGAGTACGAGGGAAACGTAGAGGCCACTGGAGAGGACTTTTCTGTGGAACCAACTGATTCCAGAAGACCTTTCCGTGCTCTTCTTGATGTTGGACTTATCAGGACTACCACTGGAAACCGTGTGTTTGGTGCACTCAAGGGAGCTTTGGACGGAGGTCTTGATATCCCTCACAGTGACAAGAGATTTGCTGGTTTCCACAAAGAGAACAAGCAACTTGATGCTGAAATCCACAGGAACTACATCTACGGTGGCCACGTCTCAAACTACATGAAGCTGTTGGGGGAAGATGAGCCGGAGAAGTTGCAAACTCACTTCAGTGCTTACATTAAGAAAGGAGTTGAAGCTGAGAGCATCGAGGAGATGTACAAGAAGGTTCACGCAGCTATCCGAGCAGAACCCAACCATAAGAAAACCGAGAAATCTGCTCCCAAGGAACACAAGAGGTACAACTTGAAGAAACTGACTTACGAAGAGAGGAAGAACAAGTTGATCGAGAGAGTGAAGGCATTAAACGGAGCAGGTGGTGATGATGATGATGAGGATGATGAAGAGTAAATCACCAATCAAGCCTTCTTTGTCTCATGCCTCTAGTAGCTTTTTACTTATTTATTTTCAGACTAAAACACTCAGTTTTTGTTTTCACATTTTAGTTGCGTTTGAAGATTTTGAATTCGAGGATATGTTTTGTTTGAAGAATTTATTATCATCTCTTATTACACCATCGTCATTTTCAGGAATTTGCCTGTCAATAGTTAGATTTTATGCGTAGTGTGGTTTTAGTGCTTGTGGAAAATGGGGATTCTTGAAGTAATGAAAGTGATCATTAGTGATGTCTTCTGATCGGGTGCTTGATACAAATTCTAACTTGATGTTACTTAATAGAAAAGATTATCTTCGTAAAG
CDS Sequence
Protein Sequence