Information report for AT5G39580
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Functional Keywords
Literature and News
- Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. DOI: 10.1104/pp.008532 ; PMID: 12481097
- Structural diversity and transcription of class III peroxidases from Arabidopsis thaliana. DOI: 10.1046/j.1432-1033.2002.03311.x ; PMID: 12473102
- Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes. DOI: 10.1105/tpc.007609 ; PMID: 12566592
- Changes in gene expression in Arabidopsis shoots during phosphate starvation and the potential for developing smart plants. DOI: 10.1104/pp.103.020941 ; PMID: 12805589
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- A genomic analysis of the shade avoidance response in Arabidopsis. DOI: 10.1104/pp.103.034397 ; PMID: 14645734
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance. DOI: 10.1104/pp.104.040444 ; PMID: 15181204
- Lipid utilization, gluconeogenesis, and seedling growth in Arabidopsis mutants lacking the glyoxylate cycle enzyme malate synthase. DOI: 10.1074/jbc.M407380200 ; PMID: 15272001
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Expression analysis of the Arabidopsis peroxidase multigenic family. DOI: 10.1016/j.phytochem.2004.04.017 ; PMID: 15231406
- The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling. DOI: 10.1104/pp.104.046482 ; PMID: 15347784
- Ozone-induced programmed cell death in the Arabidopsis radical-induced cell death1 mutant. DOI: 10.1104/pp.104.055681 ; PMID: 15728341
- Leucine-rich repeat receptor-like kinase1 is a key membrane-bound regulator of abscisic acid early signaling in Arabidopsis. DOI: 10.1105/tpc.104.027474 ; PMID: 15772289
- Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one. DOI: 10.1074/jbc.M500694200 ; PMID: 15824099
- Genome-wide transcriptional analysis of the Arabidopsis thaliana interaction with the plant pathogen Pseudomonas syringae pv. tomato DC3000 and the human pathogen Escherichia coli O157:H7. DOI: 10.1111/j.1365-313X.2006.02725.x ; PMID: 16553894
- Large-scale analysis of mRNA translation states during sucrose starvation in arabidopsis cells identifies cell proliferation and chromatin structure as targets of translational control. DOI: 10.1104/pp.106.079418 ; PMID: 16632591
- The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens. DOI: 10.1094/MPMI-19-0665 ; PMID: 16776300
- Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis. DOI: 10.1104/pp.106.082289 ; PMID: 16920880
- The Arabidopsis MAP kinase kinase MKK1 participates in defence responses to the bacterial elicitor flagellin. DOI: 10.1111/j.1365-313X.2006.02888.x ; PMID: 17059410
- Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. DOI: 10.1105/tpc.106.046490 ; PMID: 17122067
- Cuticular defects lead to full immunity to a major plant pathogen. DOI: 10.1111/j.1365-313X.2006.03017.x ; PMID: 17257167
- Characterization of Arabidopsis lines deficient in GAPC-1, a cytosolic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase. DOI: 10.1104/pp.108.128769 ; PMID: 18820081
- Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana. DOI: 10.1186/1471-2229-8-91 ; PMID: 18783601
- Coordination of five class III peroxidase-encoding genes for early germination events of Arabidopsis thaliana. DOI: 10.1016/j.plantsci.2020.110565 ; PMID: 32771166
- Unexpected protein families including cell defense components feature in the N-myristoylome of a higher eukaryote. DOI: 10.1074/jbc.M307321200 ; PMID: 12912986
- Cuticular defects lead to full immunity to a major plant pathogen. DOI: 10.1111/j.1365-313X.2006.03017.x ; PMID: 17257167
Gene Resources
- UniProt: A0A654G6F8
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G6F8
- EnsemblPlants: AT5G39580.1
- Gramene: AT5G39580.1
- KEGG: ath:AT5G39580
- Orthologous matrix: SDHVLWT
- ExpressionAtlas: AT5G39580
- InterPro: IPR000823, IPR002016, IPR010255
- PANTHER: PTHR31235
- SUPFAM: SSF48113
- PROSITE: PS50873, PS51257
- Gene3D: 1.10.420.10, 1.10.520.10
- SWISS-MODEL: A0A654G6F8
- Conserved Domain Database: cd00693
Sequences
cDNA Sequence
- >AT5G39580.1
CTATAAGTTACTCACGTTCTCGTATCACTTTCCATGCATCTAAAACAAACTCTATCTACTAACTCGAAACACACTTGCGGTCTTATCTAAAACACAAACCAACAAAAAGAAAAAATGGGCTTGGTCCGATCATTTGCTTTGGTCATAGTCTTCCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTACGTGCCCTAATGCCGAGACAATTGTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCCAAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTGCTTTTATCGGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCTCCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTTGTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGTTTCTCTCACAAACGGACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTTTCGCCTCAACACTCGCGATCTCGTCACTCTTGTTGGAGGAGGACACACGATCGGAACAGCTGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAACAATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATCAGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAAGGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTAGGGTTTGCTCTGCGGTTAATTAATCAGTGATTAAGTTTTTATGGCTAAAAAAAAGTGTTTATGGCTAACTCTTGTTCAAGGGCATTTTTTTTATAGTTTGATTTAAATTTAAACCCAATAGAATAGAAAGGATATGAGAGAAACCCAAAAGTGGGTTGCTGATAAATGTATTTCATTTCTTTCGGTTTGACTTGGTGGAATAAATAAAGTTCAATTTCGTTACATGAATAGAATTGGTG - >AT5G39580.2
CTATAAGTTACTCACGTTCTCGTATCACTTTCCATGCATCTAAAACAAACTCTATCTACTAACTCGAAACACACTTGCGGTCTTATCTAAAACACAAACCAACAAAAAGAAAAAATGGGCTTGGTCCGATCATTTGCTTTGGTCATAGTCTTCCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTACGTGCCCTAATGCCGAGACAATTGTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCCAAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGATGGTTCGGTGCTTTTATCGGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCTCCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGTTGTCTCTTGTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGTTTCTCTCACAAACGGACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGTTAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTTTCGCCTCAACACTCGCGATCTCGTCACTCTTGTTGGAGGAGGACACACGATCGGAACAGCTGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAACAATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATCAGCACGTGTTGATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCAATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCACAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAAGGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTAGGGTTTGCTCTGCGGTTAATTAATCAGTGATTAAGTTTTTATGGCTAAAAAAAAGTGTTTATGGCTAACTCTTGTTCAAGGGCATTTTTTTTATAGTTTGATTTAAATTTAAACCCAATAGAATAGAAAGGATATGAGAGAAACCCAAAAGTGGGTTGCTGATAAATGTATTTCATTTCTTTCGGTTTGACTTGGTGGAATAAATAAAGTTCAATTTCGTTACATGAATAGAATTGGTG
CDS Sequence
Protein Sequence