Information report for AT5G39550
Gene Details
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Functional Descriptions
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression. DOI: 10.1111/j.1365-313X.2004.02253.x ; PMID: 15546358
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization. DOI: 10.1101/gad.1512007 ; PMID: 17242155
- The SRA methyl-cytosine-binding domain links DNA and histone methylation. DOI: 10.1016/j.cub.2007.01.009 ; PMID: 17239600
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. DOI: 10.1371/journal.pgen.1000156 ; PMID: 18704160
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Identification and structural characterization of FYVE domain-containing proteins of Arabidopsis thaliana. DOI: 10.1186/1471-2229-10-157 ; PMID: 20678208
- Regulation of imprinted gene expression in Arabidopsis endosperm. DOI: 10.1073/pnas.1019273108 ; PMID: 21257907
- Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. DOI: 10.1016/j.cell.2012.10.054 ; PMID: 23313553
- VIM proteins regulate transcription exclusively through the MET1 cytosine methylation pathway. DOI: 10.4161/epi.28906 ; PMID: 24762702
- Arabidopsis VIM proteins regulate epigenetic silencing by modulating DNA methylation and histone modification in cooperation with MET1. DOI: 10.1093/mp/ssu079 ; PMID: 25009302
- APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3'-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability. DOI: 10.1105/tpc.18.00287 ; PMID: 30135084
- Helical and β-Turn Conformations in the Peptide Recognition Regions of the VIM1 PHD Finger Abrogate H3K4 Peptide Recognition. DOI: 10.1021/acs.biochem.1c00191 ; PMID: 34404204
- ORTH/VIM proteins that regulate DNA methylation are functional ubiquitin E3 ligases. DOI: 10.1111/j.1365-313X.2008.03631.x ; PMID: 18643997
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A654G6G1
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G6G1
- EnsemblPlants: AT5G39550.1
- Gramene: AT5G39550.1
- KEGG: ath:AT5G39550
- Orthologous matrix: RKPVQCE
- ExpressionAtlas: AT5G39550
- InterPro: IPR001841, IPR001965, IPR003105
- PANTHER: PTHR14140, PTHR14140:SF46
- SUPFAM: SSF57850, SSF57903, SSF88697
- PROSITE: PS00518, PS01359, PS50089
- Gene3D: 2.30.280.10, 3.30.40.10
- SWISS-MODEL: A0A654G6G1
- Conserved Domain Database: cd23138, cd23139
Sequences
cDNA Sequence
- >AT5G39550.1
ATTTTTTTCTTTTTTAGGTTTTTACAAATCATTTTGAAATTCACTCTTCGCCTTCCCCAAAATTTCAAAACCCGCCTCTTCACTTTTCGCCTTCCTCTACTTATTTAGCCTAAATCTCTCATAAATCTGGAAAACAACATTTTCTCTCTAAATCTCTCTCTCACTCGTTTCAACAATGGCGATTGAAACTCAGCTTCCTTGCGACGGTGACGGTGTGTGTATGCGGTGTCAGGTGAATCCTCCGTCAGAAGAGACTCTCACTTGTGGCACGTGCGTCACTCCATGGCACGTGCCGTGTCTCCTCCCCGAATCACTCGCTTCTTCCACTGGAGAGTGGGAGTGTCCCGATTGCTCCGGCGTTGTCGTTCCCTCCGCCGCTCCGGGTACCGGAAACGCTCGACCTGAATCTTCCGGTTCAGTTCTCGTTGCTGCGATCCGTGCGATTCAGGCTGATGAGACTTTAACCGAAGCTGAGAAAGCCAAAAAAAGGCAGAAACTGATGAGTGGGGGTGGTGACGATGGTGTCGATGAAGAAGAGAAGAAGAAGTTAGAAATCTTTTGTTCTATTTGCATTCAATTGCCAGAAAGACCTATCACGACACCGTGTGGGCACAATTTCTGTTTGAAATGTTTCGAGAAATGGGCAGTAGGTCAAGGGAAGCTAACTTGTATGATATGCCGAAGCAAAATTCCGAGACATGTGGCAAAAAATCCTCGCATCAACTTAGCTCTAGTTTCTGCTATTCGTTTAGCAAATGTTACCAAATGTTCTGTTGAGGCAACTGCAGCCAAGGTTCATCATATTATCCGCAACCAAGACCGTCCTGAGAAAGCATTTACTACCGAGCGGGCAGTAAAAACTGGGAAAGCTAATGCTGCTAGCGGTAAGTTTTTTGTGACAATACCTCGTGATCATTTTGGTCCCATACCAGCTGAGAATGATGTCACTAGAAAGCAAGGTGTTTTGGTTGGAGAATCTTGGGAGGACAGGCAAGAGTGTAGGCAGTGGGGAGCTCATTTCCCGCATATTGCTGGCATTGCCGGGCAATCAGCGGTTGGAGCTCAGTCTGTGGCCCTCTCTGGAGGTTATGACGATGATGAGGATCATGGTGAATGGTTTCTCTACACAGGAAGTGGTGGAAGGGATCTCAGTGGAAACAAAAGAATTAACAAGAAACAGTCGTCTGACCAGGCGTTTAAAAACATGAATGAATCTCTAAGACTTAGTTGCAAAATGGGCTATCCTGTCCGAGTTGTCAGGTCTTGGAAGGAGAAGCGTTCTGCATATGCCCCTGCTGAAGGTGTGAGATATGATGGGGTCTATCGAATTGAGAAGTGCTGGAGTAATGTTGGAGTACAGGGTTCTTTTAAGGTCTGTCGTTACCTGTTTGTTAGATGTGACAATGAGCCAGCTCCATGGACCAGTGATGAGCATGGCGATCGTCCAAGACCGTTGCCTAATGTTCCGGAGCTTGAGACTGCTGCTGACCTGTTTGTGAGAAAGGAGAGTCCATCATGGGATTTCGATGAAGCTGAGGGTCGTTGGAAATGGATGAAGTCTCCTCCTGTTAGCAGAATGGCTTTGGATCCTGAGGAGAGGAAGAAGAATAAGAGAGCAAAAAATACTATGAAGGCCAGACTTCTGAAAGAATTTAGTTGCCAAATCTGTCGGGAAGTGCTGAGTCTTCCAGTGACGACGCCTTGTGCACACAACTTCTGCAAAGCATGCTTAGAAGCGAAGTTTGCTGGGATAACTCAACTGAGAGAGAGAAGCAATGGCGGACGTAAACTACGTGCAAAGAAGAACATCATGACCTGCCCTTGCTGCACGACGGATCTCTCCGAGTTTCTCCAAAACCCGCAGGTGAACAGAGAGATGATGGAGATAATAGAGAATTTTAAGAAGAGTGAGGAAGAGGCTGATGCATCCATTTCTGAAGAAGAAGAAGAAGAATCCGAACCTCCAACTAAGAAGATTAAGATGGATAACAACTCTGTTGGTGGTAGTGGTACAAGTCTCTCAGCTTAAGGAGCTCTTTAGTTTTTCGAAACAAACTTCCTTTCTTTTTTTGGTAATATTCCGCAAACGTCTGTGAAGTTTGCATTGCGACTTATCATTTTTATTTTAAAACTTATCAGAAATTGTTCGAATCTTTTTTTTCCGTTACATATAAATTCAACATTAGTATATTACTTTAAATTTTCGTGGTCAGTGAGTTACCACAACAAATTCTCTATAAACTAATATATCGATAAATT
CDS Sequence
Protein Sequence