Information report for AT5G39040
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000025 — root tip — punta de la raíz (Spanish, exact), 根端 (Japanese, exact)
- PO:0020124 — root stele — estela de la raíz (Spanish, exact), 根中心柱 (Japanese, exact), root vascular cylinder (related)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- root , root tip , root stele , guard cell
Literature and News
- Arabidopsis mutants with increased sensitivity to aluminum. DOI: 10.1104/pp.110.3.743 ; PMID: 8819866
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. DOI: 10.1038/35048692 ; PMID: 11130711
- The Arabidopsis thaliana ABC protein superfamily, a complete inventory. DOI: 10.1074/jbc.M103104200 ; PMID: 11346655
- Multifunctionality of plant ABC transporters–more than just detoxifiers. DOI: 10.1007/s004250100661 ; PMID: 11855639
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- Inventory and comparative analysis of rice and Arabidopsis ATP-binding cassette (ABC) systems. DOI: 10.1016/j.jmb.2004.07.093 ; PMID: 15381434
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Mapping the Arabidopsis organelle proteome. DOI: 10.1073/pnas.0506958103 ; PMID: 16618929
- Identification of a vacuolar sucrose transporter in barley and Arabidopsis mesophyll cells by a tonoplast proteomic approach. DOI: 10.1104/pp.106.079533 ; PMID: 16581873
- Genome-wide analysis of ATP-binding cassette (ABC) proteins in a model legume plant, Lotus japonicus: comparison with Arabidopsis ABC protein family. DOI: 10.1093/dnares/dsl013 ; PMID: 17164256
- Altered profile of secondary metabolites in the root exudates of Arabidopsis ATP-binding cassette transporter mutants. DOI: 10.1104/pp.107.109587 ; PMID: 18065561
- Plant ABC proteins–a unified nomenclature and updated inventory. DOI: 10.1016/j.tplants.2008.02.001 ; PMID: 18299247
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole. DOI: 10.1186/1471-2229-12-226 ; PMID: 23176361
- LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. DOI: 10.1111/tpj.13506 ; PMID: 28181322
- Arabidopsis mutants with increased sensitivity to aluminum. DOI: 10.1104/pp.110.3.743 ; PMID: 8819866
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Mapping the Arabidopsis organelle proteome. DOI: 10.1073/pnas.0506958103 ; PMID: 16618929
- A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. DOI: 10.1074/mcp.M600250-MCP200 ; PMID: 17151019
Gene Resources
- UniProt: A0A654G6G7
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G6G7
- EnsemblPlants: AT5G39040.1
- Gramene: AT5G39040.1
- KEGG: ath:AT5G39040
- Orthologous matrix: MTWLGER
- ExpressionAtlas: AT5G39040
- InterPro: IPR003439, IPR003593, IPR011527
- PANTHER: PTHR43394, PTHR43394:SF1
- SUPFAM: SSF52540, SSF90123
- PROSITE: PS00211, PS50893, PS50929
- Gene3D: 1.20.1560.10, 3.40.50.300
- SWISS-MODEL: A0A654G6G7
- Conserved Domain Database: cd03249, cd18780
Sequences
cDNA Sequence
- >AT5G39040.1
ACTCTTGACCTTAACTTAAATTTAGATTTCATTTGATACTAATTAAACTATTCCCTAAATTACCAGGAAGTAACCAAATTGTGGAGAGAACAAAAACACCAATTCGATATTTTCATTCATGGCTTAGAAAATAAGAATCCTCTAAGTTCTCCTCTCTATTGAAAACCCAAAACAAAAGTTGAGAACTTTTCATATTTCAGATGGGCAACAAGAAACTGTTGACTGGTGGGTCAAGCAAAACTCATGGTAGTGGTAGTAGCTACAGAGATCCTCTGTTGCAGAATCAGGAGGATAAACCGAAAGCGAATGGAAGCGAGAATGGTTTGAATGATCTTGAGCATGGTGTAGTTGAGGCGGCAAATGTTGGATTTGGCAGAGTCTTTGCGTTGGCAAAGCCCGATGCGGGAAAGCTAGTGATTGGTACCATTGCTTTGTTGATAGGTTCAACAACTAATCTCCTTGTTCCAAAGTTTGGTGGGATGATTATAGACATTGTATCCAGAGATGTCAAGACGCCTGAGCAGCAAACGGAATCCTTGATTGCTGTTAGAAACGCCGTAGTAATCATTTTGCTTATCGTTGTAATCGGATCGATATGCACGGCTTTGCGAGCGTGGCTATTTAATTCTGCCAGTGAAAGAGTTGTGGCTCGACTGAGAAAGGATTTGTTCAGACACCTAATGCATCAGGAAATAGCATTTTATGATGTCACAAAAACCGGAGAACTCTTAAGTAGATTATCCGAAGACACCCAGATCATAAAAAACGCTGCTACTACAAATCTTTCTGAAGCTCTTCGTAACGTAACAACTGCGCTTATAGGAGTTGGTTTCATGTTTACATCATCTTGGAAATTAACATTGTTGGCGTTAGTAGTAGTTCCGGTAATTTCAGTTGCTGTGAAACAGTTTGGTCGCTATCTACGTGAACTTTCACACACAACTCAAGCTGCAGCTGCTGTTGCTGCATCAATTGCTGAGGAATCTTTTGGTGCAGTCCGAACTGTTAGATCGTTTGCGAAAGAAAGCTATATGGTATCACAATATTCCAAGAAAGTCGATGAGACTCTGAAGCTAGGACTCAAACAAGCTGTACTTGTCGGGTTGTTCTTCGGAGGACTAAACGCAGCTTTCACATTATCTGTTATTACGGTTGTTAGTTATGGAGCATACTTAACAATATATGGTTCCATGACCGTTGGAGCACTCACTTCCTTCATTCTTTATAGCCTCACAGTTGGTTCATCGGTATCTTCTTTATCGAGTTTGTACACAACTGCAATGAAAGCTGCAGGCGCTAGTAGACGAGTTTTTCAGATCTTGGACCGTGTTTCTAGCATGTCAAGTTCAGGGGATAAGTGTCCAGTCGGTAATCCTGATGGAGATGTGGAATTAAATGATGTCTGGTTTGCTTATCCTTCTCGTCCTAGTCACATGATACTCAAGGGAATATCGTTGAGGTTGACACCAGGCTCAAAAGTTGCACTAGTAGGACCAAGCGGTGGAGGAAAAACGACCATAGCTAATTTGATTGAGAGATTCTATGATCCTCTCAAGGGAAAGATTTTGCTTAATGGAGTTTCTTTGATGGAAATATCCCATCAATACCTTCACAAACAGATCAGCATTGTAAGTCAGGAACCAATTCTTTTCAACTGTTCAGTGGAAGAGAACATCGCATATGGATTTGACGGTGAAGCTAGTTTTACCGATATAGAAAATGCAGCGAAAATGGCGAATGCACACGAGTTCATTGAAGCGTTTCCGGATAAGTACAACACTGTTGTAGGAGAACGTGGATTACGGCTCTCAGGAGGACAGAAGCAAAGGATTGCAATCGCGAGGGCGCTTCTTACAAACCCGAGTGTTTTGCTCCTTGATGAAGCCACGAGTGCACTCGACGCTGAAAGCGAATATCTTGTTCAGGATGCGATGGACTCGTTAATGGCGGGAAGAACGGTGTTGGTGATAGCTCATAGGTTATCGACGGTCAAGACTGCAGACTGTGTGGCGGTTATATCAGATGGTGAGGTGGCTGAGAAAGGCACTCATGATGAGCTTCTCAGCCTTAATGGAATCTACACAAATCTTGTCAAGAGGCAGCTTCAGAGTTCTTCCTCTGTTACCACCTTGTGAGATAATATCATTCTTCTGACTACAACAACAAAAAGAAGAAATCATCATTCCATTCGAAGACTAAATTTGTATAATTTGAGTTTGAACCCTTTCAATGCACTAGAGAGTTCTCTGACATAAAATTGTAATGAGACATTTCAATTCAGTTATCTAATAAAAATAAATATGAGCCATTGAGAATGTTCGTCTAGTCTTGTGTTGTTGGAGATGAGAG - >AT5G39040.2
ACTCTTGACCTTAACTTAAATTTAGATTTCATTTGATACTAATTAAACTATTCCCTAAATTACCAGGAAGTAACCAAATTGTGGAGAGAACAAAAACACCAATTCGATATTTTCATTCATGGCTTAGAAAATAAGAATCCTCTAAGTTCTCCTCTCTATTGAAAACCCAAAACAAAAGTTGAGAACTTTTCATATTTCAGATGGGCAACAAGAAACTGTTGACTGGTGGGTCAAGCAAAACTCATGGTAGTGGTAGTAGCTACAGAGATCCTCTGTTGCAGAATCAGGAGGATAAACCGAAAGCGAATGGAAGCGAGAATGGTTTGAATGATCTTGAGCATGGTGTAGTTGAGGCGGCAAATGTTGGATTTGGCAGAGTCTTTGCGTTGGCAAAGCCCGATGCGGGAAAGCTAGTGATTGGTACCATTGCTTTGTTGATAGGTTCAACAACTAATCTCCTTGTTCCAAAGTTTGGTGGGATGATTATAGACATTGTATCCAGAGATGTCAAGACGCCTGAGCAGCAAACGGAATCCTTGATTGCTGTTAGAAACGCCGTAGTAATCATTTTGCTTATCGTTGTAATCGGATCGATATGCACGGCTTTGCGAGCGTGGCTATTTAATTCTGCCAGTGAAAGAGTTGTGGCTCGACTGAGAAAGGATTTGTTCAGACACCTAATGCATCAGGAAATAGCATTTTATGATGTCACAAAAACCGGAGAACTCTTAAGTAGATTATCCGAAGACACCCAGATCATAAAAAACGCTGCTACTACAAATCTTTCTGAAGCTCTTCGTAACGTAACAACTGCGCTTATAGGAGTTGGTTTCATGTTTACATCATCTTGGAAATTAACATTGTTGGCGTTAGTAGTAGTTCCGGTAATTTCAGTTGCTGTGAAACAGTTTGGTCGCTATCTACGTGAACTTTCACACACAACTCAAGCTGCAGCTGCTGTTGCTGCATCAATTGCTGAGGAATCTTTTGGTGCAGTCCGAACTGTTAGATCGTTTGCGAAAGAAAGCTATATGGTATCACAATATTCCAAGAAAGTCGATGAGACTCTGAAGCTAGGACTCAAACAAGCTGTACTTGTCGGGTTGTTCTTCGGAGGACTAAACGCAGCTTTCACATTATCTGTTATTACGGTTGTTAGTTATGGAGCATACTTAACAATATATGGTTCCATGACCGTTGGAGCACTCACTTCCTTCATTCTTTATAGCCTCACAGTTGGTTCATCGGTATCTTCTTTATCGAGTTTGTACACAACTGCAATGAAAGCTGCAGGCGCTAGTAGACGAGTTTTTCAGATCTTGGACCGTGTTTCTAGCATGTCAAGTTCAGGGGATAAGTGTCCAGTCGGTAATCCTGATGGAGATGTGGAATTAAATGATGTCTGGTTTGCTTATCCTTCTCGTCCTAGTCACATGATACTCAAGGGAATATCGTTGAGGTTGACACCAGGCTCAAAAGTTGCACTAGTAGGACCAAGCGGTGGAGGAAAAACGACCATAGCTAATTTGATTGAGAGATTCTATGATCCTCTCAAGGGAAAGATTTTGCTTAATGGAGTTTCTTTGATGGAAATATCCCATCAATACCTTCACAAACAGATCAGCATTGTAAGTCAGGAACCAATTCTTTTCAACTGTTCAGTGGAAGAGAACATCGCATATGGATTTGACGGTGAAGCTAGTTTTACCGATATAGAAAATGCAGCGAAAATGGCGAATGCACACGAGTTCATTGAAGCGTTTCCGGATAAGTACAACACTGTTGTAGGAGAACGTGGATTACGGCTCTCAGGAGGACAGAAGCAAAGGATTGCAATCGCGAGGGCGCTTCTTACAAACCCGAGTGTTTTGCTCCTTGATGAAGCCACGAGTGCACTCGACGCTGAAAGCGAATATCTTGTTCAGGATGCGATGGACTCGTTAATGGCGGGAAGAACGGTGTTGGTGATAGCTCATAGGTTATCGACGGTCAAGACTGCAGACTGTGTGGCGGTTATATCAGATGGTGAGGTGGCTGAGAAAGGCACTCATGATGAGCTTCTCAGCCTTAATGGAATCTACACAAATCTTGTCAAGAGGCAGCTTCAGAGTTCTTCCTCTGTTACCACCTTGTGAGATAATATCATTCTTCTGACTACAACAACAAAAAGAAGAAATCATCATTCCATTCGAAGACTAAATTTGTATAATTTGAGTTTGAACCCTTTCAATGCACTAGAGAGTTCTCTGACATAAAATTGTAATGAGACATTTCAATTCAGTTATCTAATAAAAATAAATATGAGCCATTGAGAATGTTCGTCTAGTCTTGTGTTGTTGGAGATGAGAG
CDS Sequence
Protein Sequence