Information report for AT5G37800
Gene Details
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Functional Descriptions
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0048766 — acts upstream of or within — root hair initiation
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0005634 — is active in — nucleus
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0046983 — enables — protein dimerization activity
- GO:0000978 — enables — RNA polymerase II cis-regulatory region sequence-specific DNA binding
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes. DOI: 10.1111/j.1365-313X.2004.02051.x ; PMID: 15078338
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- An ancient mechanism controls the development of cells with a rooting function in land plants. DOI: 10.1126/science.1142618 ; PMID: 17556585
- Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY. DOI: 10.1242/dev.006296 ; PMID: 17626058
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- RSL genes are sufficient for rhizoid system development in early diverging land plants. DOI: 10.1242/dev.060582 ; PMID: 21558375
- GLABRA2 Directly Suppresses Basic Helix-Loop-Helix Transcription Factor Genes with Diverse Functions in Root Hair Development. DOI: 10.1105/tpc.15.00607 ; PMID: 26486447
- Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. DOI: 10.1073/pnas.1711723115 ; PMID: 29233944
- Arabidopsis JAZ Proteins Interact with and Suppress RHD6 Transcription Factor to Regulate Jasmonate-Stimulated Root Hair Development. DOI: 10.1105/tpc.19.00617 ; PMID: 31988260
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Gene Resources
- UniProt: A0A178UPA1
- EMBL: CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178UPA1
- EnsemblPlants: AT5G37800.1
- Gramene: AT5G37800.1
- KEGG: ath:AT5G37800
- Orthologous matrix: PATNHGN
- ExpressionAtlas: AT5G37800
- InterPro: IPR011598, IPR036638, IPR045843
- PANTHER: PTHR45914, PTHR45914:SF59
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- OrthoDB: A0A178UPA1
- SWISS-MODEL: A0A178UPA1
- Conserved Domain Database: cd11454
Sequences
cDNA Sequence
- >AT5G37800.1
GCTTACCAATCTACAATCTTAAAACCATTTTTCGTTGTTTCGATTTCTCAAATCTCCTTAACCTCTCAAAGCAAAACCAAAGACATAAAAAAGAAACCCCATACATCTCACTAGAACACCCTTTAGTACCAATGTCACTCATTAACGAACATTGCAATGAGCGTAATTACATCTCAACCCCAAATTCTTCAGAAGATCTCTCTTCACCACAGAATTGCGGATTAGACGAAGGAGCTTCAGCTTCAAGCAGTAGCACCATAAATTCTGATCATCAAAATAATCAAGGGTTTGTGTTTTACCCTTCCGGGGAAACCATTGAAGATCATAATTCTTTGATGGATTTCAATGCTTCATCATTCTTCACCTTTGATAATCACCGAAGCCTTATCTCTCCCGTGACCAACGGTGGTGCCTTCCCGGTCGTGGACGGGAACATGAGTTACAGCTATGATGGCTGGAGTCATCATCAAGTGGATAGTATTAGCCCTAGAGTCATCAAAACTCCAAATAGCTTTGAAACAACGAGCAGTTTTGGATTGACTTCAAACTCCATGAGTAAACCGGCCACAAACCATGGAAATGGAGACTGGTTATACTCTGGTTCAACTATTGTAAACATCGGTTCAAGGCACGAGTCCACGTCCCCTAAACTGGCTGGCAATAAACGGCCTTTCACGGGAGAGAACACACAACTTTCAAAGAAGCCGAGTAGCGGTACGAATGGAAAGATCAAGCCTAAGGCAACAACTTCACCTAAAGATCCACAAAGCCTAGCAGCCAAGAACCGAAGAGAAAGGATAAGCGAACGCCTCAAGGTATTGCAAGAACTTGTACCGAATGGTACCAAGGTGGATTTGGTAACTATGCTTGAGAAAGCAATTGGCTATGTAAAGTTTCTTCAAGTACAAGTTAAGGTACTTGCAGCCGATGAGTTTTGGCCGGCACAAGGAGGGAAAGCTCCGGACATTTCTCAAGTTAAAGAAGCTATTGACGCAATCCTCTCATCATCACAACGAGATAGTAACTCAACTAGAGAAACAAGTATAGCAGAATAATTCCGACCAAAACAAAAAGTATAGCAGAATAATTAGTTACTAAATGTATCGGCATTAATTATAATACCAAACAAGTCATCACTTTTGAATTCGGTTTAAAAAATAGTTAATTGGTGACGTTACAGATCGAGAAGTTATTGATTCCTTTAAGGCTTTAATTATGTAAGAGCCAACACATTGAAGTCACCGACGATATGTCAGACGTCGGTCCACACGAGCATGGAATCTTATAGTAGATTAGATATGTAATAGTTATATATGTGGAGGTATGTTTCTATTTTTGTATGTTTTGTAATTCTCCAAGTATGCG
CDS Sequence
Protein Sequence