Gene Details:

• Gene ID: AT5G35910
• Gene Symbol: AtRRP6L2, RRP6L2
• Gene Name: RRP6-like 2
• Description: Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain-containing protein;(source:Araport11)
• TAIR Accession: locus:2165189
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G35910.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Gene Ontology:

• GO:0000467  — involved in — exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 27813 P other metabolic processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent CUT catabolic process GO:0071039 32922 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent tRNA catabolic process GO:0071038 32921 P other metabolic processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in histone mRNA catabolic process GO:0071044 32927 P other cellular processes IBA none PANTHER:PTN000252264|UniProtKB:Q01780|SGD:S000005527 Communication:501741973 2023-04-13 AT5G35910 locus:2165189 AT5G35910 involved in exonucleolytic trimming to generate mature 3-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
• GO:0003727  — enables — single-stranded RNA binding
• GO:0005634  — located in — nucleus
• GO:0071037  — involved in — nuclear polyadenylation-dependent snRNA catabolic process
• GO:0071044  — involved in — histone mRNA catabolic process
• GO:0071036  — involved in — nuclear polyadenylation-dependent snoRNA catabolic process
• GO:0071040  — involved in — nuclear polyadenylation-dependent antisense transcript catabolic process
• GO:0071035  — involved in — nuclear polyadenylation-dependent rRNA catabolic process
• GO:0000175  — enables — 3-5-RNA exonuclease activity
• GO:0043633  — involved in — polyadenylation-dependent RNA catabolic process
• GO:0000176  — part of — nuclear exosome (RNase complex)
• GO:0071039  — involved in — nuclear polyadenylation-dependent CUT catabolic process
• GO:0071038  — involved in — nuclear polyadenylation-dependent tRNA catabolic process
• GO:0006364  — acts upstream of or within — rRNA processing
• GO:0005730  — is active in — nucleolus
• GO:0071051  — involved in — polyadenylation-dependent snoRNA 3-end processing GO:0071051 32934 P other metabolic processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent snRNA catabolic process GO:0071037 32920 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 located in cytoplasm GO:0005737 231 C cytoplasm IDA none Publication:501724110|PMID:18285452 2016-08-01 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent antisense transcript catabolic process GO:0071040 32923 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent antisense transcript catabolic process GO:0071040 32923 P other metabolic processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 located in nucleolus GO:0005730 527 C nucleolus IDA localization of GFP/YFP fusion protein Publication:501724110|PMID:18285452 TAIR 2015-06-03 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent antisense transcript catabolic process GO:0071040 32923 P catabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent tRNA catabolic process GO:0071038 32921 P nucleobase-containing compound metabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 gene:2165188 AT5G35910.1 located in nucleus GO:0005634 537 C nucleus ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent rRNA catabolic process GO:0071035 32918 P catabolic process IBA none PANTHER:PTN000252264|UniProtKB:Q01780|SGD:S000005527 Communication:501741973 2023-04-13 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent CUT catabolic process GO:0071039 32922 P other metabolic processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent snRNA catabolic process GO:0071037 32920 P catabolic process IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in polyadenylation-dependent RNA catabolic process GO:0043633 23376 P catabolic process IMP none Publication:501724110|PMID:18285452 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in histone mRNA catabolic process GO:0071044 32927 P catabolic process IBA none PANTHER:PTN000252264|UniProtKB:Q01780|SGD:S000005527 Communication:501741973 2023-04-13 AT5G35910 locus:2165189 AT5G35910 involved in nuclear polyadenylation-dependent tRNA catabolic process GO:0071038 32921 P other cellular processes IBA none PANTHER:PTN000252264|SGD:S000005527 Communication:501741973 2021-03-31 AT5G35910 locus:2165189 AT5G35910 involved in polyadenylation-dependent snoRNA 3-end processing

Function-related keywords:

• root ,  plant sperm cell

Literature:

• Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.   DOI:  10.1128/MCB.02064-07 ;  PMID:  18285452
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Arabidopsis RRP6L1 and RRP6L2 function in FLOWERING LOCUS C silencing via regulation of antisense RNA synthesis.   DOI:  10.1371/journal.pgen.1004612 ;  PMID:  25211139
• Viral silencing suppressors and cellular proteins partner with plant RRP6-like exoribonucleases.   DOI:  10.1007/s11262-020-01775-z ;  PMID:  32519287
• Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.   DOI:  10.1128/MCB.02064-07 ;  PMID:  18285452

Sequences: