Information report for AT5G35840
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Functional Keywords
Literature and News
- Arabidopsis phytochromes C and E have different spectral characteristics from those of phytochromes A and B. DOI: 10.1016/s0014-5793(00)01301-6 ; PMID: 10734217
- The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms. DOI: 10.1093/oxfordjournals.molbev.a026316 ; PMID: 10723737
- A simple, rapid and quantitative method for preparing Arabidopsis protein extracts for immunoblot analysis. DOI: 10.1046/j.1365-313x.1999.00579.x ; PMID: 10571885
- The system of phytochromes: photobiophysics and photobiochemistry in vivo. DOI: NA ; PMID: 10379648
- Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. DOI: 10.1104/pp.119.3.909 ; PMID: 10069829
- Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. DOI: 10.1093/genetics/149.2.523 ; PMID: 9611171
- Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies. DOI: 10.1093/oxfordjournals.molbev.a025912 ; PMID: 9491613
- Overexpressed phytochrome C has similar photosensory specificity to phytochrome B but a distinctive capacity to enhance primary leaf expansion. DOI: 10.1046/j.1365-313x.1997.12051163.x ; PMID: 9418054
- Expression of heterologous phytochromes A, B or C in transgenic tobacco plants alters vegetative development and flowering time. DOI: 10.1046/j.1365-313x.1997.12051079.x ; PMID: 9418049
- Differential patterns of expression of the Arabidopsis PHYB, PHYD, and PHYE phytochrome genes. DOI: 10.1104/pp.115.3.959 ; PMID: 9390432
- A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. DOI: 10.1105/tpc.9.8.1317 ; PMID: 9286109
- Seed germination of Arabidopsis thaliana phyA/phyB double mutants is under phytochrome control. DOI: 10.1104/pp.114.4.1487 ; PMID: 9276958
- The phytochrome gene family in tomato includes a novel subfamily. DOI: 10.1007/BF00020458 ; PMID: 8616214
- Impaired splicing of phytochrome B pre-mRNA in a novel phyB mutant of Arabidopsis. DOI: 10.1007/BF00020886 ; PMID: 7539307
- The PHYC gene of Arabidopsis. Absence of the third intron found in PHYA and PHYB. DOI: 10.1104/pp.106.2.813 ; PMID: 7991704
- The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. DOI: 10.1007/BF00043870 ; PMID: 8049367
- Novel phytochrome sequences in Arabidopsis thaliana: structure, evolution, and differential expression of a plant regulatory photoreceptor family. DOI: 10.1101/gad.3.11.1745 ; PMID: 2606345
- Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis. DOI: 10.1104/pp.010467 ; PMID: 11743105
- Phytochrome A mediates blue light and UV-A-dependent chloroplast gene transcription in green leaves. DOI: 10.1104/pp.125.4.1957 ; PMID: 11299375
- Molecular and phenotypic specificity of an antisense PHYB gene in Arabidopsis. DOI: 10.1023/a:1010686805488 ; PMID: 11437253
- shl, a New set of Arabidopsis mutants with exaggerated developmental responses to available red, far-red, and blue light. DOI: 10.1104/pp.127.1.295 ; PMID: 11553757
- The hy3 Long Hypocotyl Mutant of Arabidopsis Is Deficient in Phytochrome B. DOI: 10.1105/tpc.3.12.1263 ; PMID: 12324590
- Phytochromes B, D, and E act redundantly to control multiple physiological responses in Arabidopsis. DOI: 10.1104/pp.102.015487 ; PMID: 12644683
- Differential activities of the Arabidopsis phyB/D/E phytochromes in complementing phyB mutant phenotypes. DOI: 10.1023/a:1023901718508 ; PMID: 12825695
- The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. DOI: 10.1038/ng1818 ; PMID: 16732287
- phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. DOI: 10.1111/j.1365-313X.2006.02914.x ; PMID: 17076805
- Phytochrome A is an irradiance-dependent red light sensor. DOI: 10.1111/j.1365-313X.2007.03036.x ; PMID: 17346261
- The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms. DOI: 10.1105/tpc.107.051508 ; PMID: 18065691
- Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor. DOI: 10.1105/tpc.108.065227 ; PMID: 19286967
- Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus. DOI: 10.1105/tpc.109.072520 ; PMID: 20605855
- Altitudinal and climatic adaptation is mediated by flowering traits and FRI, FLC, and PHYC genes in Arabidopsis. DOI: 10.1104/pp.111.183426 ; PMID: 21988878
- Overexpression of a phytochrome-regulated tandem zinc finger protein gene, OsTZF1, confers hypersensitivity to ABA and hyposensitivity to red light and far-red light in rice seedlings. DOI: 10.1007/s00299-012-1252-x ; PMID: 22572927
- Intramolecular uncoupling of chromophore photoconversion from structural signaling determinants drive mutant phytochrome B photoreceptor to far-red light perception. DOI: 10.4161/psb.20714 ; PMID: 22836504
- Rice PHYC gene: structure, expression, map position and evolution. DOI: 10.1023/a:1006488119301 ; PMID: 11094977
- and within-population variation in flowering time of Iberian Arabidopsis thaliana estimated in field and glasshouse conditions. DOI: 10.1111/nph.12082 ; PMID: 23252608
- Unanticipated regulatory roles for Arabidopsis phytochromes revealed by null mutant analysis. DOI: 10.1073/pnas.1221738110 ; PMID: 23302690
- Comparative functional analysis of full-length and N-terminal fragments of phytochrome C, D and E in red light-induced signaling. DOI: 10.1111/nph.12364 ; PMID: 23772959
- Functional diversity of phytochrome family in the control of light and gibberellin-mediated germination in Arabidopsis. DOI: 10.1111/pce.12286 ; PMID: 24471455
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Bottom-up Assembly of the Phytochrome Network. DOI: 10.1371/journal.pgen.1006413 ; PMID: 27820825
- Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families. DOI: 10.1073/pnas.2105649118 ; PMID: 34039713
- Photoreceptors' gene expression of Arabidopsis thaliana grown with biophilic LED-sourced lighting systems. DOI: 10.1371/journal.pone.0269868 ; PMID: 35687579
- Phytochromes and Their Role in Diurnal Variations of ROS Metabolism and Plant Proteome. DOI: 10.3390/ijms232214134 ; PMID: 36430613
Gene Resources
- UniProt: G4WU80
- EMBL: JF318755, JF318761
- AlphaFoldDB: G4WU80
- EnsemblPlants: AT5G35840.1
- Gramene: AT5G35840.1
- KEGG: ath:AT5G35840
- Orthologous matrix: QEYHDGS
- ExpressionAtlas: AT5G35840
- InterPro: IPR000014, IPR001294, IPR001610
- PANTHER: PTHR47876, PTHR47876:SF3
- SUPFAM: SSF55781, SSF55785, SSF55874
- PROSITE: PS00245, PS50046, PS50109
- Gene3D: 3.30.450.20, 3.30.450.270, 3.30.450.40
- SWISS-MODEL: G4WU80
- Conserved Domain Database: cd00130, cd16932
Sequences
cDNA Sequence
- >AT5G35840.1
GTTTTGGTACATCTATCTTCTTCTTCCCCCTTCCTCTCTCAGCTTCTCTCCCACCACTAAGGAGGAACGTTCCAAAGATCCCTTTCTCAGAGAATTCCCAGAAAAATCTTCAACAATTGAAACCCTAATGGAGAATCATTCGGATCCTTGAATCCTTTGGTTTGTCTCTCACCTCCATTTCTGAAATTTCATTGCTTTGTGATTCTTCTGCAGATTCGTTTTGAAGAGAAGAAAGAAATGTCATCGAACACTTCACGAAGCTGTTCTACTAGATCTAGACAAAACTCTCGAGTTTCTTCACAAGTTCTCGTCGACGCAAAGCTACACGGAAACTTCGAAGAATCTGAGCGTTTATTTGACTATTCAGCTTCAATAAACTTGAACATGCCAAGTTCTTCCTGTGAGATTCCTTCTTCAGCTGTCTCAACGTACTTACAGAAGATTCAGAGAGGGATGTTGATTCAACCCTTTGGTTGTTTAATCGTTGTTGATGAGAAAAACCTTAAAGTCATTGCCTTTAGTGAAAACACTCAAGAGATGTTGGGTTTGATTCCACATACAGTACCAAGTATGGAGCAGCGTGAAGCTTTGACTATAGGAACTGATGTGAAATCATTGTTTCTGTCTCCAGGTTGTTCTGCTTTGGAGAAAGCTGTTGACTTTGGTGAGATTAGTATTTTGAATCCTATCACGCTTCATTGTAGGTCTTCAAGTAAGCCTTTTTATGCGATTCTGCATCGGATTGAGGAAGGTCTTGTTATAGATTTGGAGCCTGTGAGTCCTGATGAGGTGCCTGTGACTGCTGCCGGGGCTTTAAGATCGTATAAGCTTGCGGCGAAATCGATTTCGAGGTTGCAGGCATTGCCTAGTGGGAATATGTTGTTGTTGTGTGATGCTTTGGTTAAGGAAGTTAGTGAATTAACTGGTTATGATAGGGTGATGGTGTATAAGTTCCATGAGGATGGGCATGGGGAAGTGATTGCTGAATGCTGCCGGGAAGATATGGAACCTTATCTTGGGTTGCATTACTCCGCTACTGATATACCGCAAGCTTCGAGATTTCTGTTTATGAGAAACAAGGTTAGGATGATTTGTGATTGTTCAGCGGTTCCGGTTAAAGTCGTTCAAGATAAGAGTCTCTCACAGCCAATAAGTCTTTCTGGATCTACTTTGAGAGCTCCTCATGGTTGTCACGCACAGTATATGAGTAATATGGGATCAGTGGCGTCTCTTGTCATGTCTGTAACTATCAATGGTAGTGATAGTGATGAGATGAACAGAGATTTACAGACTGGCAGACACTTATGGGGCTTGGTGGTTTGTCATCACGCAAGTCCTAGATTTGTTCCGTTTCCATTACGATATGCTTGTGAATTCTTGACTCAAGTATTTGGCGTGCAGATCAACAAAGAAGCGGAATCAGCTGTTCTGTTGAAAGAGAAGCGTATTTTGCAAACTCAGAGTGTGCTATGTGACATGCTTTTCCGCAATGCACCAATAGGTATAGTCACTCAATCACCAAATATAATGGATCTTGTTAAATGTGATGGAGCAGCATTATATTACAGAGACAACCTCTGGTCTCTAGGAGTTACTCCCACAGAGACACAAATTAGAGATCTAATTGACTGGGTTCTCAAAAGTCATGGAGGAAACACTGGCTTTACCACTGAAAGTCTAATGGAGTCTGGCTATCCGGATGCTTCTGTTCTTGGGGAGTCAATATGTGGAATGGCTGCCGTATATATTTCCGAAAAAGATTTCCTTTTCTGGTTCCGGTCTAGCACTGCAAAACAGATCAAGTGGGGTGGTGCAAGACACGATCCTAATGACAGAGATGGTAAGAGAATGCATCCTAGATCCTCATTCAAGGCTTTTATGGAAATAGTCAGGTGGAAAAGTGTGCCCTGGGATGACATGGAAATGGATGCAATTAATTCTCTGCAGCTAATAATAAAAGGCTCATTGCAAGAGGAGCATTCAAAGACTGTTGTGGATGTCCCACTTGTGGATAATAGGGTTCAGAAGGTAGATGAATTGTGTGTTATCGTGAATGAAATGGTGCGGTTGATTGATACAGCAGCTGTTCCCATCTTTGCGGTTGATGCCTCTGGTGTTATAAATGGTTGGAATTCTAAAGCGGCTGAGGTAACAGGATTGGCAGTTGAACAAGCAATAGGCAAACCTGTATCAGATCTCGTTGAGGACGATTCTGTAGAAACCGTGAAGAACATGTTAGCCTTGGCTCTCGAAGGTAGTGAAGAACGTGGTGCTGAGATCAGGATCAGAGCATTTGGTCCTAAAAGGAAAAGCAGTCCGGTTGAGTTAGTTGTCAACACTTGTTGTAGCAGAGATATGACGAATAATGTTCTTGGTGTATGCTTCATTGGACAAGATGTTACAGGCCAGAAAACGCTTACTGAAAACTATAGCCGCGTGAAAGGAGATTATGCCCGAATCATGTGGAGCCCTTCCACACTCATTCCACCAATTTTTATAACCAATGAAAATGGGGTATGCTCAGAGTGGAACAACGCAATGCAGAAGCTCTCTGGGATAAAGAGAGAAGAAGTTGTCAATAAAATTCTTCTCGGGGAGGTTTTTACCACAGATGATTATGGTTGCTGCCTTAAAGACCATGACACTTTAACGAAGCTGAGAATAGGTTTCAATGCTGTGATTTCTGGCCAAAAGAACATAGAGAAGCTTTTATTTGGCTTTTACCATCGTGATGGTAGCTTCATCGAGGCATTGCTTTCTGCAAACAAAAGGACTGATATTGAGGGAAAGGTTACCGGGGTTTTATGCTTTTTGCAAGTACCTAGTCCAGAACTCCAATATGCTCTACAGGTTCAGCAAATATCAGAGCATGCAATTGCCTGTGCCCTCAACAAATTGGCATATCTCCGCCATGAAGTGAAGGACCCCGAAAAGGCAATATCCTTCCTTCAAGATTTGCTCCATTCATCTGGATTAAGTGAAGACCAAAAGCGGCTCCTGAGGACAAGCGTTTTATGCAGGGAGCAGTTAGCCAAAGTCATAAGCGACTCAGACATAGAGGGAATCGAAGAAGGCTATGTGGAACTGGATTGCAGCGAATTCGGCCTGCAGGAATCCCTGGAAGCAGTTGTAAAACAAGTGATGGAGCTGAGCATAGAACGTAAAGTACAAATCAGCTGCGATTATCCTCAAGAAGTTTCATCAATGAGATTGTATGGAGACAACTTAAGGCTTCAGCAAATCCTTTCAGAGACACTATTAAGCAGCATACGCTTCACGCCTGCATTGAGAGGATTGTGTGTCTCATTCAAGGTAATTGCACGGATAGAAGCTATAGGAAAAAGAATGAAAAGAGTCGAACTTGAGTTCAGGATAATACACCCGGCACCAGGACTGCCTGAGGATCTGGTAAGAGAGATGTTTCAGCCTTTGAGAAAGGGAACATCAAGGGAAGGTTTGGGATTACACATTACCCAGAAGCTGGTGAAACTCATGGAGAGAGGAACATTGAGATACCTCAGAGAGTCTGAAATGTCAGCCTTTGTGATCCTCACAGAATTTCCCTTGATTTGAAGCTGAAGACCTGTCTACAAGATTTACATTTTATTGAATAAGTGTGGTGTTTTTGAAAGTCTTCATTTTTTTTTCTCACATATATAAATGTATGTTTAGTTACCGTAACTTAATTACATATATATATATAGGAAAGTTAAATTTGATGAAAGCCCCTGGCCAAGTGTAAATGACTAGCAATATCTTGTGTTTTTGTTACTTTTATAGTTTCGTTTCTCTTAGTTTCCCA
CDS Sequence
Protein Sequence