Information report for AT5G35330
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0008270 — enables — zinc ion binding
- GO:0016581 — part of — NuRD complex
- GO:0019538 — acts upstream of or within — protein metabolic process
- GO:0019899 — enables — enzyme binding
- GO:0006338 — involved in — chromatin remodeling
- GO:0000118 — located in — histone deacetylase complex
Functional Keywords
Literature and News
- Characterization of Arabidopsis thaliana methyl-CpG-binding domain (MBD) proteins. DOI: 10.1046/j.1365-313x.2003.01756.x ; PMID: 12787239
- Ten members of the Arabidopsis gene family encoding methyl-CpG-binding domain proteins are transcriptionally active and at least one, AtMBD11, is crucial for normal development. DOI: 10.1093/nar/gkg735 ; PMID: 12954765
- Methylated DNA-binding proteins from Arabidopsis. DOI: 10.1104/pp.103.026708 ; PMID: 14605234
- Evolutionary divergence of monocot and dicot methyl-CpG-binding domain proteins. DOI: 10.1104/pp.105.060566 ; PMID: 15888682
- Transcriptional profile of the Arabidopsis root quiescent center. DOI: 10.1105/tpc.105.031724 ; PMID: 15937229
- Methyl-CpG-binding domain proteins in plants: interpreters of DNA methylation. DOI: 10.1016/j.tplants.2006.12.004 ; PMID: 17208509
- Impact of AtNHX1, a vacuolar Na+/H+ antiporter, upon gene expression during and long-term salt stress in Arabidopsis thaliana. DOI: 10.1186/1471-2229-7-18 ; PMID: 17411438
- Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana. DOI: 10.1073/pnas.0802493105 ; PMID: 18550839
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- A domesticated Harbinger transposase forms a complex with HDA6 and promotes histone H3 deacetylation at genes but not TEs in Arabidopsis. DOI: 10.1111/jipb.13108 ; PMID: 33960113
- Arabidopsis RPD3-like histone deacetylases form multiple complexes involved in stress response. DOI: 10.1016/j.jgg.2021.04.004 ; PMID: 34144927
Gene Resources
- UniProt: A0A178U6X6
- EMBL: CACRSJ010000110, LR881470, LUHQ01000005
- AlphaFoldDB: A0A178U6X6
- EnsemblPlants: AT5G35330.1, AT5G35330.2, AT5G35330.3
- Gramene: AT5G35330.1, AT5G35330.2, AT5G35330.3
- KEGG: ath:AT5G35330
- Orthologous matrix: WKPDISC
- ExpressionAtlas: AT5G35330
- InterPro: IPR001739, IPR011124, IPR016177
- PANTHER: PTHR12396, PTHR12396:SF0
- SUPFAM: SSF54171
- PROSITE: PS50982, PS51050
- Gene3D: 3.30.40.100, 3.30.890.10
- SWISS-MODEL: A0A178U6X6
- Conserved Domain Database: cd01396
Sequences
cDNA Sequence
- >AT5G35330.2
CGTAACAACAAATTTTATATTTATACAAAATAAATTAAATTCAGTTTCTTTCTCTCTTCTCTTTCTCGGTTTCCCCATTTTCTATCTAGACAAAGAGTGTTGTCTGAATTGGCTCTGTCTCAAAAAATGAAATTCTCAAATTAACCACAACGATCTTTAGAGCCTTCTTCGCTCACCGATCTCTGAAACCCTGGTTTGCTCTCGTCCTCTTCGTGTAGTTTCTATGAGTATGTCGCAGTCTCGAGCTGTCCAAAGATCGTCTTCACCTAATGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGAAGAAGAAGTTCTACCGGTTCAATCTCAGCCTTTGTCATCTAGAACACAGTGTCCCTCTATCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGCAGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGCGTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTCGTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTACTGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTGGAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACATTGGAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGATGACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCTGTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAGCTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGAAAAAGAAAAAAACATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGCTAGACGAGAGTGAACTTATCTCGTCTTCTCTGGTATATAACCCGTCTTCTTTCTTCGTTTTTTGGGTTTGTCTTATCGAAGAAACTGAAAGCATGTGGTTAGCTTGTTTTTTGTGTATACCATCTATTTTGTTTTGCAGTGTAACATACTTTCTATGAAGAAGATGGGTCCTTTTGGTTTTTGCTTCCAAATAACTGGATTTTCATGCTGAAAGTTTTTAAACCTAAAGTTTGATTATTACCAA - >AT5G35330.4
CGTAACAACAAATTTTATATTTATACAAAATAAATTAAATTCAGTTTCTTTCTCTCTTCTCTTTCTCGGTTTCCCCATTTTCTATCTAGACAAAGAGTGTTGTCTGAATTGGCTCTGTCTCAAAAAATGAAATTCTCAAATTAACCACAACGATCTTTAGAGCCTTCTTCGCTCACCGATCTCTGAAACCCTGGTTTGCTCTCGTCCTCTTCGTGTAGTTTCTATGAGTATGTCGCAGTCTCGAGCTGTCCAAAGATCGTCTTCACCTAATGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGAAGAAGAAGTTCTACCGGTTCAATCTCAGCCTTTGTCATCTAGAACACAGTGTCCCTCTATCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGCAGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGCGTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTCGTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTACTGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTGGAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACATTGGAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGATGACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCTGTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAGCTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGAAAAAGAAAAAAACATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGCTAGACGAGAGTGAACTTATCTCGTCTTCTCTGGTATATAACCCGTCTTCTTTCTTCGTTTTTTGGGTTTGTCTTATCGAAGAAACTGAAAGCATGTGGTTAGCTTGTTTTTTGTGTATACCATCTATTTTGTTTTGCAGTGTAACATACTTTCTATGAAGAAGATGGGTCCTTTTGGTTTTTGCTTCCAAATAACTGGATTTTCATGCTGAAAGTTTTTAAACCTAAAGTTTGATTATTACCAA - >AT5G35330.1
CGTAACAACAAATTTTATATTTATACAAAATAAATTAAATTCAGTTTCTTTCTCTCTTCTCTTTCTCGGTTTCCCCATTTTCTATCTAGACAAAGAGTGTTGTCTGAATTGGCTCTGTCTCAAAAAATGAAATTCTCAAATTAACCACAACGATCTTTAGAGCCTTCTTCGCTCACCGATCTCTGAAACCCTGGTTTGCTCTCGTCCTCTTCGTGTAGTTTCTATGAGTATGTCGCAGTCTCGAGCTGTCCAAAGATCGTCTTCACCTAATGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGAAGAAGAAGTTCTACCGGTTCAATCTCAGCCTTTGTCATCTAGAACACAGTGTCCCTCTATCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGCAGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGCGTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTCGTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTACTGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTGGAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACATTGGAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGATGACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCTGTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAGCTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGAAAAAGAAAAAAACATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGCTAGACGAGAGTGAACTTATCTCGTCTTCTCTGGTATATAACCCGTCTTCTTTCTTCGTTTTTTGGGTTTGTCTTATCGAAGAAACTGAAAGCATGTGGTTAGCTTGTTTTTTGTGTATACCATCTATTTTGTTTTGCAGTGTAACATACTTTCTATGAAGAAGATGGGTCCTTTTGGTTTTTGCTTCCAAATAACTGGATTTTCATGCTGAAAGTTTTTAAACCTAAAGTTTGATTATTACCAA - >AT5G35330.3
CGTAACAACAAATTTTATATTTATACAAAATAAATTAAATTCAGTTTCTTTCTCTCTTCTCTTTCTCGGTTTCCCCATTTTCTATCTAGACAAAGAGTGTTGTCTGAATTGGCTCTGTCTCAAAAAATGAAATTCTCAAATTAACCACAACGATCTTTAGAGCCTTCTTCGCTCACCGATCTCTGAAACCCTGGTTTGCTCTCGTCCTCTTCGTGTAGTTTCTATGAGTATGTCGCAGTCTCGAGCTGTCCAAAGATCGTCTTCACCTAATGAGGATAGAGGTGAGAATCAGTTAGTGGTTTATGACTTGAAAGGAAATGATGATACTGAAGAAGAAGTTCTACCGGTTCAATCTCAGCCTTTGTCATCTAGAACACAGTGTCCCTCTATCGGGGCATTTACGGTTCAGTGTGCAAGTTGTTTCAAATGGAGACTCATGCCTTCAATGCAGAAGTATGAAGAGATTAGGGAACAGCTTCTTGAAAACCCGTTTTTCTGCGATACAGCGCGTGAGTGGAAGCCGGATATTTCTTGTGATGTTCCTGCTGATATCTATCAAGATGGAACTCGTCTTTGGGCTATTGATAAACCGAATATCTCTCGTCCACCCGCTGGCTGGCAACGTTTACTGCGGATTAGAGGTGAAGGAGGTACCAGATTTGCTGATGTTTATTATGTTGCTCCGTCTGGAAAGAAGCTTCGATCAACTGTGGAGGTCCAAAAGTACTTGAATGACAACTCCGAATACATTGGAGAAGGGGTGAAACTTTCACAGTTCTCGTTTCAAATCCCGAAACCGCTGCAGGATGACTACGTGAGGAAGCGCCCAGCTCGACTACTGGATTCCATCGATAATACAAACACCCCTGTAGCTAAAGAAGCTAATCCACTGGCATGGATATCTCCAGATGATCATATATCGTTGCAGCTAGGTACGCCAACCGAGTCTGGACTTAACAATTCACATTACCAACCATCGAAAAAGAAAAAAACATCGACGCTATCAATCTTTGGCTCCAACGACGAACTTGCTGATAGATAATCTAGCTAGACGAGAGTGAACTTATCTCGTCTTCTCTGGTATATAACCCGTCTTCTTTCTTCGTTTTTTGGGTTTGTCTTATCGAAGAAACTGAAAGCATGTGGTTAGCTTGTTTTTTGTGTATACCATCTATTTTGTTTTGCAGTGTAACATACTTTCTATGAAGAAGATGGGTCCTTTTGGTTTTTGCTTCCAAATAACTGGATTTTCATGCTGAAAGTTTTTAAACCTAAAGTTTGATTATTACCAA
CDS Sequence
Protein Sequence