Information report for AT5G27850
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0022625 — located in — cytosolic large ribosomal subunit
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:0009536 — located in — plastid
- GO:0022626 — located in — cytosolic ribosome
- GO:0005737 — located in — cytoplasm
- GO:0009506 — located in — plasmodesma
- GO:0003729 — enables — mRNA binding
- GO:0005773 — located in — vacuole
- GO:0003735 — enables — structural constituent of ribosome
- GO:0006412 — involved in — translation
- GO:0003723 — enables — RNA binding
- GO:0022625 — part of — cytosolic large ribosomal subunit
- SALK_097816 — Delayed leaf development.
Functional Keywords
Literature and News
- Isolation, sequence analysis, and expression studies of florally expressed cDNAs in Arabidopsis. DOI: 10.1023/B:PLAN.0000019063.18097.62 ; PMID: 15010618
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. DOI: 10.1038/sj.emboj.7601150 ; PMID: 16724114
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Differential phosphorylation of ribosomal proteins in Arabidopsis thaliana plants during day and night. DOI: 10.1371/journal.pone.0029307 ; PMID: 22195043
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Balance between Cytosolic and Chloroplast Translation Affects Leaf Variegation. DOI: 10.1104/pp.17.00673 ; PMID: 29142022
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. DOI: 10.1093/pcp/pch099 ; PMID: 15215502
- High heterogeneity within the ribosomal proteins of the Arabidopsis thaliana 80S ribosome. DOI: 10.1007/s11103-005-0699-3 ; PMID: 15821981
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A1P8BGQ0
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BGQ0
- EnsemblPlants: AT5G27850.2
- Gramene: AT5G27850.2
- Orthologous matrix: KIVALKW
- ExpressionAtlas: AT5G27850
- InterPro: IPR000039, IPR021131, IPR036227
- PANTHER: PTHR10934, PTHR10934:SF25
- SUPFAM: SSF52080
- Gene3D: 3.100.10.10
- SWISS-MODEL: A0A1P8BGQ0
Sequences
cDNA Sequence
- >AT5G27850.2
CTCTCGCAGACGCAGCCATGGTAAATTCTTGATCTCCGCCTCTCAATCTCCGTTTCTTATGTATTACAAAATGAATTCTCCGTTTGCGAGCTTGATCTAGTTGGTTTAGCGTGTAATGGTTCCTTAGGTTTCTGATGTTTCGTTATGGATTTGCATTTGAGTGTTTTATCGTTGTTGTTATTTTAGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCAAAAGGACTGCTCCTAAGTCCGATGATGTCTACCTAAAGCTTCTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATCTAACAGCAACTTCAATGCTGTGATTCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAGGATGACAAGATTGCTGTGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAGGTTACTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAAGCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAACACAGTTCTTCTTAGAGGACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAGATGTTTTCTGGTTTCGTTTTGCTTGGTTTAAGTATCGAAGTTTTGGTAGGGAACGCTGGTTCCTCTTTACCCTGTTCCAGACTTTGTTTTAAGTTCTGTTTTTCTATTCTCAAGACAATTGGATATTTTGCTTTGTCTTTTAATCTTACTACTATTAGCTGCAATGAGATTTTATCTAGAATTTGGATTTGATCAGTATTTGGAGTTCATAGTATCATTATGGTCTATTTCGTTTTGTATTTCTCTTCCTTGGAAATAAAATATCTGTACATGAGTATTAAAATGTGTAAACAACCCTGAAAAATGT - >AT5G27850.1
CTCTCGCAGACGCAGCCATGGTAAATTCTTGATCTCCGCCTCTCAATCTCCGTTTCTTATGTATTACAAAATGAATTCTCCGTTTGCGAGCTTGATCTAGTTGGTTTAGCGTGTAATGGTTCCTTAGGTTTCTGATGTTTCGTTATGGATTTGCATTTGAGTGTTTTATCGTTGTTGTTATTTTAGGGTATCGATCTTATCGCAGGAGGTAAGAGTAAGAAGACCAAAAGGACTGCTCCTAAGTCCGATGATGTCTACCTAAAGCTTCTCGTCAAGCTTTACCGGTTTTTGGTGAGGAGATCTAACAGCAACTTCAATGCTGTGATTCTGAAAAGGCTTTTCATGAGCAAAGTCAACAAAGCTCCTCTTTCACTCTCTAGGCTTGTAGAGTTCATGACTGGCAAGGATGACAAGATTGCTGTGTTGGTTGGAACTATCACTGATGATTTGAGAGTTCATGAGATTCCTGCCATGAAGGTTACTGCCTTGAGGTTTACTGAGAGGGCTAGGGCTAGAATTGAGAAAGCTGGTGGAGAGTGCTTAACCTTTGACCAGCTTGCTCTCAGAGCTCCATTGGGACAGAACACAGTTCTTCTTAGAGGACCAAAGAACTCGCGTGAAGCAGTGAAGCATTTCGGACCTGCTCCTGGTGTGCCACACAGTAACACTAAGCCATATGTTAGGCATAAGGGAAGGAAGTTTGAGAAAGCTAGAGGAAAGCGAAAGAGTCGTGGATTCAAGGTCTAAGAAGATGTTTTCTGGTTTCGTTTTGCTTGGTTTAAGTATCGAAGTTTTGGTAGGGAACGCTGGTTCCTCTTTACCCTGTTCCAGACTTTGTTTTAAGTTCTGTTTTTCTATTCTCAAGACAATTGGATATTTTGCTTTGTCTTTTAATCTTACTACTATTAGCTGCAATGAGATTTTATCTAGAATTTGGATTTGATCAGTATTTGGAGTTCATAGTATCATTATGGTCTATTTCGTTTTGTATTTCTCTTCCTTGGAAATAAAATATCTGTACATGAGTATTAAAATGTGTAAACAACCCTGAAAAATGT
CDS Sequence
Protein Sequence