Gene Details:
- Gene ID: AT5G27650
- Gene Symbol: PDP1
- Gene Name: PWWP domain protein 1
- Description: Tudor/PWWP/MBT superfamily protein;(source:Araport11)
- TAIR Accession: locus:2143631
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Gene Ontology:
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0040029 — acts upstream of or within — epigenetic regulation of gene expression
- GO:0005634 — located in — nucleus
- GO:0005515 — enables — protein binding
- GO:0035098 — part of — ESC/E(Z) complex
- GO:2000028 — involved in — regulation of photoperiodism, flowering
Germplasm Phenotype:
- pdp1-1 — Delayed flowering.
Function-related keywords:
Literature:
- Genome-wide analysis of the RNA-DEPENDENT RNA POLYMERASE6/DICER-LIKE4 pathway in and tasiRNA-directed targeting. DOI: 10.1105/tpc.107.050062 ; PMID: 17400893
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. DOI: 10.1007/s11103-014-0280-z ; PMID: 25600937
- Arabidopsis PWWP domain proteins mediate H3K27 trimethylation on FLC and regulate flowering time. DOI: 10.1111/jipb.12630 ; PMID: 29314758
Sequences:
cDNA Sequence
- >AT5G27650.1
AACAATAATCCGTCTCTTTCATTTGGTGTCCTCGAGAACCAAATTCGGATAATCTCTCATCGGAGGATCGTTGTTGTTGTTGCTAGGGTTCTTATCGATTTGTAATGTACAAAACTAAATTAATCCCGGTGATGAACGAGGATGCTGTGATTGTTCAACAAACGGATTCGATTCAGGATCCTAAGGTAACTCCAGATGATACTGTAGTTGATTCGAGCGGGGATGTTCACGAAGCCATTGATGATGATGTTGAAGCTTCTTCACCTATGGAGCTAGATTCGGCGGTTACAAATGACGCTAGGGTTCTCGAAAGTGAGAGATCGGAGAAAGATGGTGTCGTAGGGAGTGAGGAGGAAGATGAGATTAAAAGCGAGGATGTTTTAATTGATAAGGATGATGAGAGTTCTGAGGTTAAAGAAGAAGAAGAAGAAGAAGATGGCTCTGATGATCAATCTAGTGAGCTTGGTTCTGAAGCTGATGAGAAGGAATTAGATTTGGGTTTGAAGGAAGAGAAAAAAGGAGTTTCGGATTATAAATCTCTTTTATCTGAGTTTGATGATTATGTTGCAAGTGAGAAAATGGGTTCTGGAGTTTCGAGGGCATTGAGTTATGGGTTTGAAGTTGGAGATTTGGTTTGGGGAAAGGTAAAGTCTCATCCTTGGTGGCCTGGTCATATATTCAATGAAGCTTTTGCGTCTCCTTCTGTTCGTCGTATGAGGAGGATTGATCATGTTCTTGTTGCGTTTTTCGGTGATAGTAGTTATGGTTGGTTTGATCCTGCTGAGCTTATTCCTTTCGAACCGAATTTAGAGGAGAAATCACAGCAGACGGTTTCGAAGCATTTTGTGAGAGCTGTGGAGGAAGCCAAGGATGAGGCGAGTAGAAGGTCAGCTCTTGGTTTGACTTGTAAATGTCGGAATCCTTATAACTTTAGGCCTAGTAATGTGGAAGATTACTTTGCTGTTGATGTGCCTGATTACGAGCTTCAAGCCGTTTACTCTGTTGATCAGATTAAGAATTCTAGGGATAAGTTTTTACCCGCTGAAACCATTTCGTTTGTGAAGCAATTGGCGTTAGCACCTCAAGAGTGTGATCCAGACAGTTTAAAGTTTATGAAGAAGAAAGCAGTGGTTTTTGCTTTCCGCAAGTCAGTGTTTGAGGAGTTTGATGAAACTTATGCACAGGCCTTTGGGACAAAATCACCCCGCAGTTCAGTGAGTACGCTGGAACCTCATAATAGAGCACCGCCTCGAGCTCCCTTGAGTGGCCCACTGGTCATAGCAGAAACGCTAGGTGACCTTAAGAGCTCTAAAAAACCCACAAAGGTTAAGGTCTCTAAAAAAAAAGACAAGTATCTTCTCAAACGAAGGGATGAAGCTGGTGATAAGTCTGTTCAGTTTGGCGAAATTGAAGCAAGTTCAGAAGCTTCTCATATCCAGGGAATTGATGGATCTTTGGATGGGGATTTTGGGCTGCAGAGAAGAGCTCCGACGCTTCAAACTCCAATGAAAGATGAGAAGTCTGGGATCGTCAGCATGGATTTTGCCTCTTCAAATACAGCTATTCCTGGTAAAGAATTTTCAGCTTCAAAGCCCTCTCTTGATGAAGAAAAGGGTCTAGCTGAAAAATCAAAGGAGAGAATGGAAGAAAGAGCTGCTGTACTTCCAGAGCATGGGAAATCTGAAGCTATGGCGAGTCTTAAACCTAAAGAAGAAGCTGGAACAGATCTTGGATCAGCTGGAAGTTCTCTCCAGCCTCTGCTTGAGTCTCATACCTCAGCATCTGAGGGGAAAAGTTCCACAGGGTCTGTAATCAAGAAAGTCAAAGTTGCTAAACGATCTTCAAGTGAAATGAGCTCGGAGAATCCTCCTTCAGAGCCAAAAAAGAAAAAGAAAAAGAAGAAAGAGCCTGATTCTGACCATCCAGTGAAGAGAAAAAATTTGTATTCTGGGGAAGCTGGGGCCAAGAAATTGTCCCAGCTTGGTTCAGCGCATTTACAAACCTATATGGAAGCCGATGTGCCGCAGCTGTTGAGCCATCTGCAAGATCTCTCTCTTGACCCTTTCCACGGTTTATCCGTTGCTTCTTTTGGAACTGCTAGGAAATTTTTTCTCCGTTTCCGTTCACTTAATTACCAGAAAAGCTTGTCTGTATCTTCCTCTGATGCTACTGTCGAAAATGCCAGAGACACAAAACCCTCAAAACCTGTCAAGACAGTGAAGAGAACCGAAGACCCATCAAAAGCTGGAAAAAAACGGCTCTCTTCTGATCGTCAAGATGAAATCCCATCAGCTAAGAAGCTGAAGAAAACTAATCAGTTGAAATCAATGGCTTCTGAAAAGAAGATCATTCGAGAAGCAAAGGATAGTATAAAACCAATAAGAGAGCCAAGCAGGGTGGTACAAGCAAAACCAGCCAGAGGTCAAACCGGGAAGAAAACAGCTCCATCAGTTAAGGTGGTTGAGCCAACAATGCTGGTCATGAAATTCCCACCTGGCACATCTCTCCCTTCAGCCGCATTGCTAAAGGCGAGGTTTGGTCGCTTCGGGCTGTTAGATCAATCCGCCATTAGGGTTTTCTGGAAATCATCGACCTGCCGTGTTGTCTTTCTGTACAAAGCCGATGCCCAGACTGCTTTTCGATATGCAACAGGAAACAACACTCTATTTGGAAACGTGAATGTAAAGTACTTTCTCCGTGATGTGGATGCTCCTAAAGCCGAGCCTCGTGAGCCAGAAAACACCAAGGAAGATGATGAACCACAGAGCCAGTGGTTGGACCAAGCACCACCGCTTCACCAACCAACATTACCGCCACCAAACGTCAACCTCAAATCCTGTTTGAAGAAACCAGTTGATGACCCGAGCAGTAGTAGCAACAATGGAAACGGTAACCGCGCAGCCGTAAGAGTCAAATTCATGTTAGGTGGTGAAGAAAACTCGAGTAAAGCAAACACCGAGCCACCACAGGTCACAATGACCTTGAATAGAAACAGTGGACCTTCTTCATCATCATCATCTGTTCCAATGGAATTTGTTAGTAAGAAGTTTCAAAACGTTGTTCATCATCAACAGCTTCCTCCTTCTACATTGCCTCCAATTCTTCCTCTCCCTCCACAATACACAAAACCACAACAACTTCCCATTAAACCAGTAGACCACGTCGAACCACCAATGCCACCTTCAAGAAACTTCCGTGGCCCGATCCCAGCGGTTAGCGCTGGGGACATCTCTCACCAGATGCTCAACCTTTTGTCAAAATGCAACGAAGTAGTGGCTAACGTCACGGGCTTATTGGGCTACGTCCCTTATCATCCCTTGTAACAAAACGAAGCCCGTTGAGAGAAAATGTGAGTGTTTGTTTGGTTTTTGGTGATAATATTGTATGTTAGGTATTAGTTTGGTTCGTTAACTTTAAATCATGTATTACAATTTATAATGATGAATCTCTCTCCCTCTCCCTCTCCCAGGCTTGTTTTATATTTCGTGTATTATTTTTTGAAGTTGTATGCTTTTGATATTTGATGCACTATGCGGAACCAATTCCATTGTTGTGTTACGTTATATATTCTCATTTGGTCTTA
CDS Sequence
Protein Sequence