Information report for AT5G27540
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0003924 — enables — GTPase activity
- GO:0005739 — located in — mitochondrion
- GO:0009860 — acts upstream of or within — pollen tube growth
- miro1-1 — Embryo lethal. Embryos arrest between zygote and four cell stage. Abnormal male transmission due to defects in pollen germination and pollen tube growth. Abnormal mitochondrial morphology.
Functional Keywords
Literature and News
- Analysis of EF-hand-containing proteins in Arabidopsis. DOI: 10.1186/gb-2002-3-10-research0056 ; PMID: 12372144
- Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana. DOI: 10.1023/a:1022573230486 ; PMID: 12678558
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Localization of organelle proteins by isotope tagging (LOPIT). DOI: 10.1074/mcp.T400009-MCP200 ; PMID: 15295017
- High rate of recent intron gain and loss in simultaneously duplicated Arabidopsis genes. DOI: 10.1093/molbev/msl017 ; PMID: 16720694
- An expressed sequence tag (EST) library from developing fruits of an Hawaiian endemic mint (Stenogyne rugosa, Lamiaceae): characterization and microsatellite markers. DOI: 10.1186/1471-2229-6-16 ; PMID: 16928278
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Alteration of mitochondrial protein complexes in relation to metabolic regulation under short-term oxidative stress in Arabidopsis seedlings. DOI: 10.1016/j.phytochem.2010.11.003 ; PMID: 21146842
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- The hydrophobic proteome of mitochondrial membranes from Arabidopsis cell suspensions. DOI: 10.1016/j.phytochem.2004.03.028 ; PMID: 15276431
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A178UBE1
- EMBL: CACRSJ010000110, LUHQ01000005
- AlphaFoldDB: A0A178UBE1
- EnsemblPlants: AT5G27540.1, AT5G27540.2
- Gramene: AT5G27540.1, AT5G27540.2
- KEGG: ath:AT5G27540
- Orthologous matrix: EGFISKW
- ExpressionAtlas: AT5G27540
- InterPro: IPR001806, IPR011992, IPR013566
- PANTHER: PTHR46819, PTHR46819:SF1
- SUPFAM: SSF47473, SSF52540
- PROSITE: PS00018, PS51419, PS51423
- Gene3D: 1.10.238.10, 3.40.50.300
- SWISS-MODEL: A0A178UBE1
- Conserved Domain Database: cd01892, cd01893
Sequences
cDNA Sequence
- >AT5G27540.2
ACTAGACTAAACACAGACAAGGTAAAAAAAAAAAACAGCTTACCAAATTTTTCTCCTCCTTCACGGCAAATCGTCACCGCCACATTATCTCCCAAACTAAGAATCTAGGGTTTTCTAAGGGTTTTTAATCTTCGTCCTTCTCTCCTTCTCCAGTTTTAGGTTTCAGGTTTATCTCTCGTTTCTTTCATCGAATCTTTTGATCTTTAGTTTCAGATGGCGAGATACGCTGCTGGTGCGGTTGATTGTCCTGGTTCTCCCAAATCTGTGCGAATCGTTGTGGTTGGTGATAAGGGCACTGGAAAATCAAGCTTGATTGTTGCTGCAGCCACTGATTCTTTCCCTCCCAATGTCCCTCCTGTTTTGCCTGATTACAAGTTGCCTATTGAATTCTTCCCTGATGGTATACCCGTCACCATTGTCGACACTTCCTCGAGGCCAGAAGATAGGGACATTGTTGCTGAGGAATTGAAGCGCGCAGATGCAGTAGTTTTGACATATGCCTGTGATCGACCTGAGACTCTCGAACGTTTGAGTGAATACTGGCTTCCAGAGCTTCGGCGATTAGAGGTAAAAATTCCTATTATCGTAGCAGGATGTAAGCTTGACTTCAGAGACGACAATAACCAGGTCAGCCTCGAACAAGTGATGTCACCTATAATGCAGCAGTTTCGGGAGATAGAGACTTGTATCGAGTGTTCTGCCCTGAAGCAACTCCAGGCACAAGAAGTTTTCTATTATGCACAAAAGACTGTCCTTCACCCAACAGGACCTCTGTTTGATCAAGATTCCCAGGCACTGAAACCCCGGTGTGTAAGGGCATTGAAGCGTATCTTTATACTCTGTGATCATGACAGAGATGGTGCTCTTAGCGAGGCTGAGTTAAATGATTTTCAGGTCAAGTGTTTCCATGCACCATTGCAGCCTTCTGAAATTGAAGGTGTTAAGAGGGTTGTGCAAGAAAAGTTGCCAGAAGGTGTGAATGAAAGAGGACTGACAGTCACTGGCTTCCTATTTTTACATGCACTTTTTATTGAGAAAGGGAGGCTTGAGACTACGTGGACTGTACTCAGGAAGTTTGGGTATAATAATGATATAAGACTTGCTGAAGAATTGCTTCCATCTGCAATATTCAAGCGAGCTCCTGATCAGAGCTTTGAGTTGACAAATGCAGCAATCGATTTCCTGAAAGGAATGTATATGTTGTTTGATGACGACCAGGATAACAATCTGAGACCTCAAGAGATCGAGGATCTTTTTTCAACTGCACCTGAAAGTCCATGGAAGGAAGCTCCTTATGAAGATGCTGCGGAAAAAACTGCCCTTGGAGGACTATCATTTGACGCTTTCCTGTCAATGTGGTCACTGATGACACTATTAGAACCGGCTCGGAGTGTGGAGAATTTGATTTACATTGGATTCCCGGGTGATCCATCGACTGCCATTCGTGTTACTAGGAGAAGACGTTTAGATCGCAAAAAGCAGCAATGTGAACGAAAAGTTTTCCAGTGCTTTGTTTTTGGACCTAATAATGCTGGAAAATCTGCATTGCTGAATTGCTTTCTTGGAAGGTCATATACTGATAACCAGGAATCAACTACTGATGAGCGTTATGCAGTAAATATGGTCGATGAATCGGGTGCTAAGAAAACTCTTATCATGAGGGAAATTCCAGAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGTGACATAGCTGTCTTCGTGTATGACAGTTCTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTAGAAGTTGCAAATTATGGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGATTCATCTCCTATTTCCATACAAGAATCCACCAGGATGACACAAGATATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCAACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGACCGAAGCAGGCAAAAGCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCCGTTTCCATTGGTGCTGCTGCTGTGGTCGTTGGGCTGGCTGCATACCGTGTGTATGCCACAAGAAAGAGCTCGTCTGCCTGAGAAGATTGAGAATGAACAATCCAATCTCTTAAGGTATGAACACGGAAAGAGGATAGCAAATCTCGTGTACTGAGTTTGTTTATCGTTCTCAAGGTTTTACAACTTGATCCAGAGTACTGTTGAGTACTGTTCTTAGAAGTTTAATGGAAATGGGCTTTGTTTGAAGTAATTGTGGAAGAAGATCTGTAGCAAACACAAACATTTAGGGACAAGATAAAAAGAGAACATAGTCAATAGACATTGTGTTGAATTTCAATAACAATAGAACTTTGTCTCCTCGATGTTGTTAATCTTGCTCACGTTTGCTCTGTTCTCGGAATTAACCAGCAACACTTTAACATC - >AT5G27540.1
ACTAGACTAAACACAGACAAGGTAAAAAAAAAAAACAGCTTACCAAATTTTTCTCCTCCTTCACGGCAAATCGTCACCGCCACATTATCTCCCAAACTAAGAATCTAGGGTTTTCTAAGGGTTTTTAATCTTCGTCCTTCTCTCCTTCTCCAGTTTTAGGTTTCAGGTTTATCTCTCGTTTCTTTCATCGAATCTTTTGATCTTTAGTTTCAGATGGCGAGATACGCTGCTGGTGCGGTTGATTGTCCTGGTTCTCCCAAATCTGTGCGAATCGTTGTGGTTGGTGATAAGGGCACTGGAAAATCAAGCTTGATTGTTGCTGCAGCCACTGATTCTTTCCCTCCCAATGTCCCTCCTGTTTTGCCTGATTACAAGTTGCCTATTGAATTCTTCCCTGATGGTATACCCGTCACCATTGTCGACACTTCCTCGAGGCCAGAAGATAGGGACATTGTTGCTGAGGAATTGAAGCGCGCAGATGCAGTAGTTTTGACATATGCCTGTGATCGACCTGAGACTCTCGAACGTTTGAGTGAATACTGGCTTCCAGAGCTTCGGCGATTAGAGGTAAAAATTCCTATTATCGTAGCAGGATGTAAGCTTGACTTCAGAGACGACAATAACCAGGTCAGCCTCGAACAAGTGATGTCACCTATAATGCAGCAGTTTCGGGAGATAGAGACTTGTATCGAGTGTTCTGCCCTGAAGCAACTCCAGGCACAAGAAGTTTTCTATTATGCACAAAAGACTGTCCTTCACCCAACAGGACCTCTGTTTGATCAAGATTCCCAGGCACTGAAACCCCGGTGTGTAAGGGCATTGAAGCGTATCTTTATACTCTGTGATCATGACAGAGATGGTGCTCTTAGCGAGGCTGAGTTAAATGATTTTCAGGTCAAGTGTTTCCATGCACCATTGCAGCCTTCTGAAATTGAAGGTGTTAAGAGGGTTGTGCAAGAAAAGTTGCCAGAAGGTGTGAATGAAAGAGGACTGACAGTCACTGGCTTCCTATTTTTACATGCACTTTTTATTGAGAAAGGGAGGCTTGAGACTACGTGGACTGTACTCAGGAAGTTTGGGTATAATAATGATATAAGACTTGCTGAAGAATTGCTTCCATCTGCAATATTCAAGCGAGCTCCTGATCAGAGCTTTGAGTTGACAAATGCAGCAATCGATTTCCTGAAAGGAATGTATATGTTGTTTGATGACGACCAGGATAACAATCTGAGACCTCAAGAGATCGAGGATCTTTTTTCAACTGCACCTGAAAGTCCATGGAAGGAAGCTCCTTATGAAGATGCTGCGGAAAAAACTGCCCTTGGAGGACTATCATTTGACGCTTTCCTGTCAATGTGGTCACTGATGACACTATTAGAACCGGCTCGGAGTGTGGAGAATTTGATTTACATTGGATTCCCGGGTGATCCATCGACTGCCATTCGTGTTACTAGGAGAAGACGTTTAGATCGCAAAAAGCAGCAATGTGAACGAAAAGTTTTCCAGTGCTTTGTTTTTGGACCTAATAATGCTGGAAAATCTGCATTGCTGAATTGCTTTCTTGGAAGGTCATATACTGATAACCAGGAATCAACTACTGATGAGCGTTATGCAGTAAATATGGTCGATGAATCGGGTGCTAAGAAAACTCTTATCATGAGGGAAATTCCAGAAGATGGAGTTCAAGGGCTATTTTCATCCAAGGAATCCTTAGCTGCATGTGACATAGCTGTCTTCGTGTATGACAGTTCTGATGAGTCGTCATGGAAGAGAGCGACCCAGTTGCTTGTAGAAGTTGCAAATTATGGTGAGGCCACTGGGTATGAGGTCCCTTGCCTCATGGTTTCAGCAAAAGACGATCTTGATTCATCTCCTATTTCCATACAAGAATCCACCAGGATGACACAAGATATGGGAATAGAGCCTCCGGTATCAATCAGCTCCAAATTGGGGGATTTCAACAATTTATTCCGCAAAATCTTAACTGCAGCACAACATCCTCATTTGAGCATTCCAGAGACCGAAGCAGGCAAAAGCCGCAAACATTACAACAGGCTAATCAACCGCTCTCTTATGGCCGTTTCCATTGGTGCTGCTGCTGTGGTCGTTGGGCTGGCTGCATACCGTGTGTATGCCACAAGAAAGAGCTCGTCTGCCTGAGAAGATTGAGAATGAACAATCCAATCTCTTAAGGTATGAACACGGAAAGAGGATAGCAAATCTCGTGTACTGAGTTTGTTTATCGTTCTCAAGGTTTTACAACTTGATCCAGAGTACTGTTGAGTACTGTTCTTAGAAGTTTAATGGAAATGGGCTTTGTTTGAAGTAATTGTGGAAGAAGATCTGTAGCAAACACAAACATTTAGGGACAAGATAAAAAGAGAACATAGTCAATAGACATTGTGTTGAATTTCAATAACAATAGAACTTTGTCTCCTCGATGTTGTTAATCTTGCTCACGTTTGCTCTGTTCTCGGAATTAACCAGCAACACTTTAACATC
CDS Sequence
Protein Sequence