Information report for AT5G27420
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Identification and characterisation of a melon genomic region containing a resistance gene cluster from a constructed BAC library. Microcolinearity between Cucumis melo and Arabidopsis thaliana. DOI: 10.1023/a:1022573230486 ; PMID: 12678558
- The carboxylesterase gene family from Arabidopsis thaliana. DOI: 10.1007/s00239-003-2492-8 ; PMID: 14738307
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome. DOI: 10.1111/j.1365-313X.2004.02295.x ; PMID: 15634198
- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. DOI: 10.1111/j.1469-8137.2004.01238.x ; PMID: 15720654
- Detoxification and transcriptome response in Arabidopsis seedlings exposed to the allelochemical benzoxazolin-2(3H)-one. DOI: 10.1074/jbc.M500694200 ; PMID: 15824099
- Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. DOI: 10.1093/aob/mci217 ; PMID: 16081496
- The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. DOI: 10.1104/pp.105.068254 ; PMID: 16183833
- 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. DOI: 10.1104/pp.105.067058 ; PMID: 16258017
- Transcriptome analysis reveals specific modulation of abscisic acid signaling by ROP10 small GTPase in Arabidopsis. DOI: 10.1104/pp.105.068064 ; PMID: 16258012
- Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. DOI: 10.1104/pp.105.070110 ; PMID: 16244138
- Arabidopsis ESK1 encodes a novel regulator of freezing tolerance. DOI: 10.1111/j.1365-313X.2006.02994.x ; PMID: 17316173
- Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. DOI: 10.1111/j.1365-313X.2007.03192.x ; PMID: 17651370
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptional responses of Arabidopsis thaliana plants to As (V) stress. DOI: 10.1186/1471-2229-8-87 ; PMID: 18684332
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response. DOI: 10.1007/s11103-012-9907-0 ; PMID: 22481162
- Pale-green phenotype of atl31atl6 double mutant leaves is caused by disruption of 5-aminolevulinic acid biosynthesis in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0117662 ; PMID: 25706562
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Arabidopsis CBL-Interacting Protein Kinases Regulate Carbon/Nitrogen-Nutrient Response by Phosphorylating Ubiquitin Ligase ATL31. DOI: 10.1016/j.molp.2017.01.005 ; PMID: 28111287
- The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes. DOI: 10.1094/MPMI-07-17-0188-FI ; PMID: 29264953
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
- The calcium-dependent protein kinase CPK28 is targeted by the ubiquitin ligases ATL31 and ATL6 for proteasome-mediated degradation to fine-tune immune signaling in Arabidopsis. DOI: 10.1093/plcell/koab242 ; PMID: 34599338
- A network of stress-related genes regulates hypocotyl elongation downstream of selective auxin perception. DOI: 10.1093/plphys/kiab269 ; PMID: 34618142
- The TGN/EE SNARE protein SYP61 and the ubiquitin ligase ATL31 cooperatively regulate plant responses to carbon/nitrogen conditions in Arabidopsis. DOI: 10.1093/plcell/koac014 ; PMID: 35089338
- Concerted action: SYP61 and ATL31 cooperatively regulate the carbon/nitrogen nutrient response in Arabidopsis. DOI: 10.1093/plcell/koac005 ; PMID: 35234919
- Phosphorylation status of CPK28 affects its ubiquitination and protein stability. DOI: 10.1111/nph.18596 ; PMID: 36333900
- New insights on the regulatory network of drought-responsive key genes in Arabidopsis thaliana. DOI: 10.1007/s10709-022-00177-3 ; PMID: 36474134
- Regulatory module WRKY33-ATL31-IRT1 mediates cadmium tolerance in Arabidopsis. DOI: 10.1111/pce.14558 ; PMID: 36738191
- Transcriptome analysis reveals specific modulation of abscisic acid signaling by ROP10 small GTPase in Arabidopsis. DOI: 10.1104/pp.105.068064 ; PMID: 16258012
- Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor. DOI: 10.1094/MPMI-20-8-0900 ; PMID: 17722694
- The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense. DOI: 10.1104/pp.108.117523 ; PMID: 18467450
Gene Resources
- UniProt: A0A654G4U2
- EMBL: CACRSJ010000110, LR881470
- AlphaFoldDB: A0A654G4U2
- EnsemblPlants: AT5G27420.1
- Gramene: AT5G27420.1
- KEGG: ath:AT5G27420
- Orthologous matrix: SFLWRNT
- ExpressionAtlas: AT5G27420
- InterPro: IPR001841, IPR013083, IPR053238
- PANTHER: PTHR14155, PTHR14155:SF578
- SUPFAM: SSF57850
- PROSITE: PS50089
- Gene3D: 3.30.40.10
- SWISS-MODEL: A0A654G4U2
- Conserved Domain Database: cd16461
Sequences
cDNA Sequence
- >AT5G27420.1
CCCTAACTTCCTCGCTTCTTCTCCACGACTTTTTCAAACTTTTCAAAACCTCCCTATAAACTTCAGATCCTTATTCCTCACAATATTAAACCAAAAAAAAAAACTAACTTTTTGGGACTCCAGAACTAATAATGGATCCCATAAAACACATCTCTTTACCAGTTCTTGTCTTGTTTCTACTATTATCCGTGTCGGCGGGTCAACCCGGAACCCCGGACCAGAGACATGACCCGTATGCTTACAGCGGCAGTCTAAGTCCAGCCATGGCTGTTGTCGTTGTAGTTGTCATCGCAGCTCTCTTCTTCATGGGCTTCTTCACCGTCTATATACGTCACTGTACTGGCGCAGTAGACGGTAGCGTTACTCCTGCAGGAGGAGCTAGGAGGAGAGTGACGAACGCAACGGTTGCGCGTGGGTTAGACGCGGAGACGATCGAGACGTTTCCGACTTTTGTTTACTCAGAAGTGAAGACACAGAAGATTGGTAAAGGAGCGTTGGAGTGTGCGATTTGTTTGAATGAGTTTGAAGACGATGAAACGCTGCGTCTGTTGCCTAAATGTGATCACGTGTTTCATCCTCATTGTATCGGCGCGTGGCTTCAAGGTCACGTGACTTGTCCGGTTTGTCGGACTAATCTTGCTGAACAGACGCCTGAACCGGAAGTGGTGGTGGAAACCGATCTTGAGGCGCAGCAGCAATCGGCGGTTCCTGTACCGGTGGTGGAACTTCCACGTGTTAAATTCCCGAGGTCGCATACGACAGGGCATTCGGTGGTTTTACCGGGAGAGAGTACCGACCGGTTTACGCTTAGAGTACCGGAAGAATTAAGGAAGAAGATAATGGCGAATTGGAAATTGAACCGGTCGAATAGTGTTTTTGTTTTACCGAGAGGAGGAAGCTCGAGGAGTGGTAAACAGGTTGACCGGTCGAGGGCTAAATCGGACCGGTGGTTGTTCCGTAAAACTCCGTCGTTTCTATGGAGGAACCGGGATGATGGTTCGATTAGGCTAGGTGGTACCGGTAGTGTTAGAGGAAATTCAGTAACAAGTCCGAGCGGTGACTCGGTACGAGCAGACCGGTGGGCTTTTCTTAGAAACCCATCGTTTCTCTGGAGGAATACGACGCCGGTTCCTTCGCCGAGAGTTGAAGTCAATAATAAGGACGGTGAAGGAACATCGTCAGTTCAACATATCGGTACAGTTGGTTCAACTAGCGGTTCCCTTAGGCTACCGGTTTAGTGTTCGGTGATGTTTTGTGCATTGTTCATAAACACGCAATAGATTTTACGTAATTCTTTAATTTTGTTTGTCTTTTTCTGTAAGATATTTAAATCGACAATCCAACGGAAAAAGGAGATTGTTTTACTTAATTTATTTTATACTCTTCAAAAGTCAAACAAAGAACGAACTGGAGATTGGTCTTGTTCTTAAAAAAAAAAAAAGTCTTGTTCGTCGACCAAAGAATACATGGAACTGGAAGATAGAGACTACAACATTATTTTATAGCGGTAATGGAATGTATTATCTAGTTCTGAATTCATGTGTTTATTTCTCGATGAATACGATGAACGACTAAAAAAAGAGAGGAACTATATAACAAACAAATTTGTTACCAATTAATGATTGTTTTTTTTTTGGGGAAATACAACGTTTTTTTTTTCTCAAGTAGTATTGTTGTCGGACCAAAACAAAAATTTGTACTAATATATGAATCAAGTAGATAAGAACAATGTATCAAATTAAAATTTCAGATAAC
CDS Sequence
Protein Sequence