Information report for AT5G26980
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- CS86277 — Small and dark-green rosettes; epinastic leaves (leaf margins curled down) giving the appearance of narrow leaves; early flowering (bolting occurs 20 days after planting); short internodes; short siliques; short plants; average height = 21 cm.
Functional Keywords
Literature and News
- AtVPS45 complex formation at the trans-Golgi network. DOI: 10.1091/mbc.11.7.2251 ; PMID: 10888666
- The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. DOI: 10.1104/pp.124.4.1558 ; PMID: 11115874
- Interactions between syntaxins identify at least five SNARE complexes within the Golgi/prevacuolar system of the Arabidopsis cell. DOI: 10.1091/mbc.12.12.3733 ; PMID: 11739776
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- YKT6 is a core constituent of membrane fusion machineries at the Arabidopsis trans-Golgi network. DOI: 10.1016/j.jmb.2005.04.061 ; PMID: 15919093
- AtVPS45 is a positive regulator of the SYP41/SYP61/VTI12 SNARE complex involved in trafficking of vacuolar cargo. DOI: 10.1104/pp.108.134361 ; PMID: 19251905
- TNO1 is involved in salt tolerance and vacuolar trafficking in Arabidopsis. DOI: 10.1104/pp.110.168963 ; PMID: 21521696
- Functional redundancy between trans-Golgi network SNARE family members in Arabidopsis thaliana. DOI: 10.1186/1471-2091-14-22 ; PMID: 24021022
- Interactomics of Qa-SNARE in Arabidopsis thaliana. DOI: 10.1093/pcp/pcu038 ; PMID: 24556609
- The Prenylated Rab GTPase Receptor PRA1.F4 Contributes to Protein Exit from the Golgi Apparatus. DOI: 10.1104/pp.17.00466 ; PMID: 28487479
- The Asparagine-Rich Protein NRP Facilitates the Degradation of the PP6-type Phosphatase FyPP3 to Promote ABA Response in Arabidopsis. DOI: 10.1016/j.molp.2017.11.006 ; PMID: 29175650
- Overexpression of trans-Golgi network t-SNAREs rescues vacuolar trafficking and TGN morphology defects in a putative tethering factor mutant. DOI: 10.1111/tpj.14353 ; PMID: 31009161
- AtTRAPPC11/ROG2: A Role for TRAPPs in Maintenance of the Plant Trans-Golgi Network/Early Endosome Organization and Function. DOI: 10.1105/tpc.19.00110 ; PMID: 31175171
- Overexpressed Tomosyn Binds Syntaxins and Blocks Secretion during Pollen Development. DOI: 10.1104/pp.19.00965 ; PMID: 31530628
- The Arabidopsis R-SNARE protein YKT61 is essential for gametophyte development. DOI: 10.1111/jipb.13017 ; PMID: 32918784
- SNAREs Regulate Vesicle Trafficking During Root Growth and Development. DOI: 10.3389/fpls.2022.853251 ; PMID: 35360325
- VPS45 is required for both diffuse and tip growth of Arabidopsis thaliana cells. DOI: 10.3389/fpls.2023.1120307 ; PMID: 36923123
- The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. DOI: 10.1104/pp.124.4.1558 ; PMID: 11115874
- The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. DOI: 10.1104/pp.124.4.1558 ; PMID: 11115874
Gene Resources
- UniProt: A0A654G4F8
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G4F8
- EnsemblPlants: AT5G26980.1, AT5G26980.2, AT5G26980.3
- Gramene: AT5G26980.1, AT5G26980.2, AT5G26980.3
- KEGG: ath:AT5G26980
- Orthologous matrix: DFRRCHA
- ExpressionAtlas: AT5G26980
- InterPro: IPR000727, IPR006011, IPR006012
- PANTHER: PTHR19957, PTHR19957:SF83
- SUPFAM: SSF47661
- PROSITE: PS00914, PS50192
- Gene3D: 1.20.58.70
- SWISS-MODEL: A0A654G4F8
- Conserved Domain Database: cd15845
Sequences
cDNA Sequence
- >AT5G26980.1
AGTGAAAGACATAGAAGAGATGAGTTCTATTACATGTATTAAATTGTTTTTTAACAGCCCGCACGAATGCATGCCGTTTAAACCTTTTACCCGCCGTGTTTTTCCCTTTTGGAATATCAAAACGTCATGCTGTTAGTACGACGCTTACGTGTCGAAATATTATTGGTTTGTATTTGGTAAGCTGGTGAAACAGGACAAAGTTAGCCGCGCAACTGTTTTTTAACTTTTTTTTTTACTGTTTCCAAAGTTTTAAGTTTTGGGGAAATAGTGAAAAGTGAAAACCTCAATTTGCAAATCTGAGAGTTTACTTTCCTCATCGGAAAAAGTTTTGATCTCGCCGCTCTCCGAGCACTTCCTTGTCGGAGTCCCAATTTTTGTGTTCGGTTTTATTCTCGGTCGATGATGAAGCCGCGATTGTGTTCAGATCGGAGCTGATTTCGAATTTGGATGTGAAATTGAGATTCTAGGGATTTCAAATTTTGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGCGGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTACGCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAACGAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAAGGAAATATTCTTGTGATCGGATACTATAATCCCTGGTTAGATCAATAAGAAAAGTTCGATCCTTAACTATTTCATTCTTTAGCCCCGAACATCGCATGTTTTCCTTCAGGGCTTTTGGTTTCAACTTCTTTGCATTTAACAATACTAAGATCCTTTGCAGAGTAGTTAGTACGTAATATTATTGTGTAGAAGAAGACCATAGATAGTCAGAGGTCGATGTCTGAGGAGTTGAGAGATCTGTGCACCAACGCCAAAATACTCTCTTCACGCTAAAGTCAAGTGTTCTTTTAAAATGTATAAGATTCCAGTCATAGTTGTTGGAACTTGTTTTTGACAAAATGGTTTTGACCATTGTAACTTGTGGATTTTCCGGTGAAGACGTTCATTGGAGTGACCAGATTTCGGGCAAGATGGAATCGTAGCTGCGAGCACTACATGGTGGAGTATTCAAATGTGAAAACGAGTTTGTTTGAAATCTTTTACTTTCCGGTTATTGTATCTTCGCATAAATTACAAATTCTCAACATTCTAGTTCTTTTAAAAACATATATCATTTACAAATGTATAAATATTTTTCACTTGAAACAATGAAAACTTTATACACGTT - >AT5G26980.3
AGTGAAAGACATAGAAGAGATGAGTTCTATTACATGTATTAAATTGTTTTTTAACAGCCCGCACGAATGCATGCCGTTTAAACCTTTTACCCGCCGTGTTTTTCCCTTTTGGAATATCAAAACGTCATGCTGTTAGTACGACGCTTACGTGTCGAAATATTATTGGTTTGTATTTGGTAAGCTGGTGAAACAGGACAAAGTTAGCCGCGCAACTGTTTTTTAACTTTTTTTTTTACTGTTTCCAAAGTTTTAAGTTTTGGGGAAATAGTGAAAAGTGAAAACCTCAATTTGCAAATCTGAGAGTTTACTTTCCTCATCGGAAAAAGTTTTGATCTCGCCGCTCTCCGAGCACTTCCTTGTCGGAGTCCCAATTTTTGTGTTCGGTTTTATTCTCGGTCGATGATGAAGCCGCGATTGTGTTCAGATCGGAGCTGATTTCGAATTTGGATGTGAAATTGAGATTCTAGGGATTTCAAATTTTGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGCGGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTACGCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAACGAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAAGGAAATATTCTTGTGATCGGATACTATAATCCCTGGTTAGATCAATAAGAAAAGTTCGATCCTTAACTATTTCATTCTTTAGCCCCGAACATCGCATGTTTTCCTTCAGGGCTTTTGGTTTCAACTTCTTTGCATTTAACAATACTAAGATCCTTTGCAGAGTAGTTAGTACGTAATATTATTGTGTAGAAGAAGACCATAGATAGTCAGAGGTCGATGTCTGAGGAGTTGAGAGATCTGTGCACCAACGCCAAAATACTCTCTTCACGCTAAAGTCAAGTGTTCTTTTAAAATGTATAAGATTCCAGTCATAGTTGTTGGAACTTGTTTTTGACAAAATGGTTTTGACCATTGTAACTTGTGGATTTTCCGGTGAAGACGTTCATTGGAGTGACCAGATTTCGGGCAAGATGGAATCGTAGCTGCGAGCACTACATGGTGGAGTATTCAAATGTGAAAACGAGTTTGTTTGAAATCTTTTACTTTCCGGTTATTGTATCTTCGCATAAATTACAAATTCTCAACATTCTAGTTCTTTTAAAAACATATATCATTTACAAATGTATAAATATTTTTCACTTGAAACAATGAAAACTTTATACACGTT - >AT5G26980.2
AGTGAAAGACATAGAAGAGATGAGTTCTATTACATGTATTAAATTGTTTTTTAACAGCCCGCACGAATGCATGCCGTTTAAACCTTTTACCCGCCGTGTTTTTCCCTTTTGGAATATCAAAACGTCATGCTGTTAGTACGACGCTTACGTGTCGAAATATTATTGGTTTGTATTTGGTAAGCTGGTGAAACAGGACAAAGTTAGCCGCGCAACTGTTTTTTAACTTTTTTTTTTACTGTTTCCAAAGTTTTAAGTTTTGGGGAAATAGTGAAAAGTGAAAACCTCAATTTGCAAATCTGAGAGTTTACTTTCCTCATCGGAAAAAGTTTTGATCTCGCCGCTCTCCGAGCACTTCCTTGTCGGAGTCCCAATTTTTGTGTTCGGTTTTATTCTCGGTCGATGATGAAGCCGCGATTGTGTTCAGATCGGAGCTGATTTCGAATTTGGATGTGAAATTGAGATTCTAGGGATTTCAAATTTTGACGATCATGGCGACGAGGAATCGTACGTTGCTGTTTAGGAAGTACAGAAACTCTCTGAGAAGCGTCAGAGCTCCATTGTCGTCATCTTCATTGACGGGAACACGATCCGGCGGCGTTGGTCCGGTGATCGAGATGGCGAGTACTTCGTTATTGAATCCGAATCGCTCTTACGCTCCTATTAGTACCGAAGATCCTGGAACTTCTAGTAAAGGTGCGATAACAGTGGGCTTACCACCAGCTTGGGTTGATGTCTCTGAGGAGATATCTGTGAATATACAGCGTGCAAGGACTAAAATGGCTGAGTTGGGAAAGGCTCATGCCAAGGCGTTAATGCCATCGTTTGGGGATGGTAAAGAAGATCAACATAATATTGAGTCTTTGACACAGGAGATAACTTTTCTATTGAAGAAGTCTGAGAAGCAACTTCAGAGGCTTTCTGCTTCAGGGCCTTCTGAAGATTCAAATGTTAGGAAAAATGTGCAGCGGTCTCTTGCCACTGACCTCCAACTTCTTTCTATGGAGCTTCGCAAAAAACAGTCAACATATTTGAAACGCTTGAGGCAGCAAAAAGAGGATGGGATGGATTTAGAGATGAATCTGAGCAGAAACAGATATAGACCTGAAGAGGATGACTTTGGCGATATGTTAAACGAGCATCAGATGTCAAAGATAAAAAAGAGTGAAGAAGTATCTGTAGAGAGGGAGAAAGAGATACAACAGGTTGTAGAATCAGTAAACGATCTTGCTCAAATTATGAAGGATCTTTCTGCACTTGTGATAGATCAGGGTACAATAGTTGATCGGATAGACTATAATATCGAAAACGTCGCTACTACTGTTGAAGATGGTCTCAAACAACTACAGAAGGCAGAGCGAACGCAGAGACATGGAGGTATGGTGAAGTGCGCATCCGTGCTTGTCATCCTCTGTTTCATCATGCTGCTACTCTTAATCCTCAAGGAAATATTCTTGTGATCGGATACTATAATCCCTGGTTAGATCAATAAGAAAAGTTCGATCCTTAACTATTTCATTCTTTAGCCCCGAACATCGCATGTTTTCCTTCAGGGCTTTTGGTTTCAACTTCTTTGCATTTAACAATACTAAGATCCTTTGCAGAGTAGTTAGTACGTAATATTATTGTGTAGAAGAAGACCATAGATAGTCAGAGGTCGATGTCTGAGGAGTTGAGAGATCTGTGCACCAACGCCAAAATACTCTCTTCACGCTAAAGTCAAGTGTTCTTTTAAAATGTATAAGATTCCAGTCATAGTTGTTGGAACTTGTTTTTGACAAAATGGTTTTGACCATTGTAACTTGTGGATTTTCCGGTGAAGACGTTCATTGGAGTGACCAGATTTCGGGCAAGATGGAATCGTAGCTGCGAGCACTACATGGTGGAGTATTCAAATGTGAAAACGAGTTTGTTTGAAATCTTTTACTTTCCGGTTATTGTATCTTCGCATAAATTACAAATTCTCAACATTCTAGTTCTTTTAAAAACATATATCATTTACAAATGTATAAATATTTTTCACTTGAAACAATGAAAACTTTATACACGTT
CDS Sequence
Protein Sequence