Gene Details:
- Gene ID: AT5G26780
- Gene Symbol: SHM2
- Gene Name: serine hydroxymethyltransferase 2
- Description: serine hydroxymethyltransferase 2;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020148 — shoot apical meristem — SAM (exact), meristema apical del epiblasto (epiblastema) (Spanish, exact), 茎頂分裂組織 (Japanese, exact), primary shoot meristem (related), promeristem (broad)
Function-related keywords:
Literature:
- Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization. DOI: 10.1104/pp.102.016436 ; PMID: 12644654
- Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. DOI: 10.1046/j.1365-313x.2003.01706.x ; PMID: 12662315
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- Proteome mapping of mature pollen of Arabidopsis thaliana. DOI: 10.1002/pmic.200402011 ; PMID: 16247729
- Proteomic analysis and extensive protein identification from dry, germinating Arabidopsis seeds and young seedlings. DOI: 10.5483/bmbrep.2005.38.6.650 ; PMID: 16336779
- Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function. DOI: 10.1104/pp.109.147942 ; PMID: 20018591
- Internal architecture of mitochondrial complex I from Arabidopsis thaliana. DOI: 10.1105/tpc.109.073726 ; PMID: 20197505
- Arabidopsis thaliana serine hydroxymethyltransferases: functions, structures, and perspectives. DOI: 10.1016/j.plaphy.2022.07.025 ; PMID: 35947902
- Integrated temporal regulation of the photorespiratory pathway. Circadian regulation of two Arabidopsis genes encoding serine hydroxymethyltransferase. DOI: 10.1104/pp.123.1.381 ; PMID: 10806255
- Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. DOI: 10.1046/j.1365-313x.2003.01706.x ; PMID: 12662315
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- Proteome mapping of mature pollen of Arabidopsis thaliana. DOI: 10.1002/pmic.200402011 ; PMID: 16247729
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
- Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. DOI: 10.1046/j.1365-313x.2003.01706.x ; PMID: 12662315
- Proteome mapping of mature pollen of Arabidopsis thaliana. DOI: 10.1002/pmic.200402011 ; PMID: 16247729
- Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. DOI: 10.1046/j.1365-313x.2003.01706.x ; PMID: 12662315
- Proteome mapping of mature pollen of Arabidopsis thaliana. DOI: 10.1002/pmic.200402011 ; PMID: 16247729
Sequences:
cDNA Sequence
- >AT5G26780.3
AACTCCAATGCTCACTTATACAGAAGCTGAGAAGCAGAACCGCTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGACGATAGATAGAGAAAAAAAAAAAATGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCGATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCAGCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTAGATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTAGATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGTTGGATATAAGACCTACTGTAATCATCTCATATGGCTTGTCAATGCAGACTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGGTGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAGGAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGATGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCGAGAAAGAGACGATGAGATACAAAGAGTAGTTTTCATCGTGTGGATTGACACGTTTCCACATCTCTGAGATGCTTTAGGTACCTAAAACACTTAATTATACATAAGCTTCTTCTATGAAATATTTTGGAGGGACTCATTATGGGGCGATTGTGCAACCGTTTGCAGTGATCATGGACCAGAGGCGCAACCGATGGTCTGAAGTATCGCTGAAACTAAAGTTGAACTAAAAAAATCGCACTCCAATGTTGTCTCTTACCCTTTCCTTTTGTCTCTCAAATTTTATCTTTGCTTCCTTAAGTTGGTTCCTCAAAATTCAAAATTTGTAATGCAACTGGTTTAAGGTTGCTATGATGGATAATGGCAACTAAAGTTATAGGATAAACGATGCAGCTTTG - >AT5G26780.2
AACTCCAATGCTCACTTATACAGAAGCTGAGAAGCAGAACCGCTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGACGATAGATAGAGAAAAAAAAAAAATGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCGATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCAGCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTAGATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTAGATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGTTGGATATAAGACCTACTGTAATCATCTCATATGGCTTGTCAATGCAGACTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGGTGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAGGAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGATGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCGAGAAAGAGACGATGAGATACAAAGAGTAGTTTTCATCGTGTGGATTGACACGTTTCCACATCTCTGAGATGCTTTAGGTACCTAAAACACTTAATTATACATAAGCTTCTTCTATGAAATATTTTGGAGGGACTCATTATGGGGCGATTGTGCAACCGTTTGCAGTGATCATGGACCAGAGGCGCAACCGATGGTCTGAAGTATCGCTGAAACTAAAGTTGAACTAAAAAAATCGCACTCCAATGTTGTCTCTTACCCTTTCCTTTTGTCTCTCAAATTTTATCTTTGCTTCCTTAAGTTGGTTCCTCAAAATTCAAAATTTGTAATGCAACTGGTTTAAGGTTGCTATGATGGATAATGGCAACTAAAGTTATAGGATAAACGATGCAGCTTTG - >AT5G26780.4
AACTCCAATGCTCACTTATACAGAAGCTGAGAAGCAGAACCGCTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGACGATAGATAGAGAAAAAAAAAAAATGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCGATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCAGCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTAGATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTAGATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGTTGGATATAAGACCTACTGTAATCATCTCATATGGCTTGTCAATGCAGACTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGGTGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAGGAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGATGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCGAGAAAGAGACGATGAGATACAAAGAGTAGTTTTCATCGTGTGGATTGACACGTTTCCACATCTCTGAGATGCTTTAGGTACCTAAAACACTTAATTATACATAAGCTTCTTCTATGAAATATTTTGGAGGGACTCATTATGGGGCGATTGTGCAACCGTTTGCAGTGATCATGGACCAGAGGCGCAACCGATGGTCTGAAGTATCGCTGAAACTAAAGTTGAACTAAAAAAATCGCACTCCAATGTTGTCTCTTACCCTTTCCTTTTGTCTCTCAAATTTTATCTTTGCTTCCTTAAGTTGGTTCCTCAAAATTCAAAATTTGTAATGCAACTGGTTTAAGGTTGCTATGATGGATAATGGCAACTAAAGTTATAGGATAAACGATGCAGCTTTG - >AT5G26780.1
AACTCCAATGCTCACTTATACAGAAGCTGAGAAGCAGAACCGCTTTTATATAATCGCACTCACTCAGAGAAACAGAGAAGACGATAGATAGAGAAAAAAAAAAAATGGCGTTGGCTCTTCGTAGACTCTCCTCTTCCGTTAAGAAACCGATCTCGCTTCTCTCCTCTAATGGCGGTTCACTCCGTTTCATGTCGTCTTTATCAACCGCAGCTATGGCGGAATCGGAGAAATCTCGTTCTAGTTGGATTAAGCAATTGAATGCATCTCTAGATGAAATCGATCCTGAAGTTGCGGATATTATCGAATTAGAGAAGGCTAGACAATGGAAGGGATTTGAACTTATACCGTCAGAGAATTTCACTTCTCTATCTGTGATGCAAGCCGTTGGTTCTGTTATGACTAATAAGTATAGTGAAGGATACCCTGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAAAAACGCGCATTAGAAGCTTTTCAGTTAGATCCTTCTAAATGGGGAGTCAATGTGCAGTCTTTATCAGGATCACCAGCTAATTTCCAAGTTTACACTGCATTGTTGAAGCCTCATGAAAGAATCATGGCACTTGATTTACCTCATGGTGGACATCTTTCTCATGGTTATCAGACTGACACGAAGAAAATATCGGCTGTATCCATCTTTTTTGAGACAATGCCATACAGATTGGATGAGAACACTGGTTACATTGATTATGACCAGCTAGAAAAGAGTGCCGTGCTTTTCAGACCGAAACTTATTGTTGCGGGTGCAAGTGCTTATGCTCGTCTATATGACTATGCACGTATTCGTAAGGTCTGTAACAAGCAAAAGGCAGTTATGTTGGCTGATATGGCTCATATTAGTGGGTTGGTTGCTGCTGGCGTTATTCCTTCTCCTTTTGAGTATGCAGATGTTGTTACGACTACAACTCACAAATCGCTTCGCGGTCCTAGAGGGGCTATGATATTCTTTAGGAAGGGGTTAAAAGAGATTAACAAACAAGGGAAAGAGGTCATGTATGACTATGAGGACAGAATTAATCAAGCTGTTTTTCCTGGACTGCAAGGTGGTCCACATAATCACACTATAACGGGTCTAGCAGTTGCTCTGAAGCAGGCAAGAACTCCTGAGTACAAGGCCTACCAGGATCAAGTTCTCCGTAATTGCTCAAAGTTTGCTGAGTTGGATATAAGACCTACTGTAATCATCTCATATGGCTTGTCAATGCAGACTTTGCTTGCGAAAGGATATGATTTAGTGTCTGGAGGCACTGATAATCATTTAGTTTTGGTGAATCTGAAAAACAAGGGAATAGATGGATCAAGAGTGGAAAAAGTATTAGAATTAGTACATATTGCAGCAAACAAGAATACTGTTCCTGGTGATGTTTCTGCCATGGTTCCCGGTGGCATCCGTATGGGAACACCAGCCCTCACATCAAGAGGATTCATTGAGGAAGATTTTGCAAAAGTGGCGGAGTATTTTGATTTAGCCGTCAAGATAGCCTTAAAGATCAAAGCAGAGTCTCAAGGAACAAAGTTGAAAGACTTTGTAGCAACAATGCAATCAAATGAGAAATTACAGTCAGAGATGTCAAAGCTCCGTGAGATGGTAGAAGAATATGCTAAGCAATTCCCAACGATTGGGTTCGAGAAAGAGACGATGAGATACAAAGAGTAGTTTTCATCGTGTGGATTGACACGTTTCCACATCTCTGAGATGCTTTAGGTACCTAAAACACTTAATTATACATAAGCTTCTTCTATGAAATATTTTGGAGGGACTCATTATGGGGCGATTGTGCAACCGTTTGCAGTGATCATGGACCAGAGGCGCAACCGATGGTCTGAAGTATCGCTGAAACTAAAGTTGAACTAAAAAAATCGCACTCCAATGTTGTCTCTTACCCTTTCCTTTTGTCTCTCAAATTTTATCTTTGCTTCCTTAAGTTGGTTCCTCAAAATTCAAAATTTGTAATGCAACTGGTTTAAGGTTGCTATGATGGATAATGGCAACTAAAGTTATAGGATAAACGATGCAGCTTTG
CDS Sequence
Protein Sequence