Gene Details:
- Gene ID: AT5G26240
- Gene Symbol: ATCLC-D, AtCLCd, CLC-D, CLCd
- Gene Name: chloride channel D, chloride channel D
- Description: chloride channel D;(source:Araport11)
- TAIR Accession: locus:2179724
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Gene Ontology:
- GO:0005802 — located in — trans-Golgi network
- GO:0015108 — enables — chloride transmembrane transporter activity
- GO:0009826 — acts upstream of or within — unidimensional cell growth
- GO:0005622 — located in — intracellular anatomical structure
- GO:0043231 — is active in — intracellular membrane-bounded organelle
- GO:0005253 — enables — monoatomic anion channel activity
- GO:0045824 — acts upstream of or within — negative regulation of innate immune response
- GO:0005247 — enables — voltage-gated chloride channel activity
- GO:0010038 — acts upstream of or within — response to metal ion
Germplasm Phenotype:
- SALK_042895 — Root growth at neutral and acidic pH on synthetic medium impaired.
Function-related keywords:
Literature:
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. DOI: 10.1038/35048692 ; PMID: 11130711
- Function of the anion transporter AtCLC-d in the trans-Golgi network. DOI: 10.1111/j.1365-313X.2007.03061.x ; PMID: 17376158
- The chloride channel family gene CLCd negatively regulates pathogen-associated molecular pattern (PAMP)-triggered immunity in Arabidopsis. DOI: 10.1093/jxb/ert484 ; PMID: 24449384
- ClCd and ClCf act redundantly at the trans-Golgi network/early endosome and prevent acidification of the Golgi stack. DOI: 10.1242/jcs.258807 ; PMID: 34528690
- Function of the anion transporter AtCLC-d in the trans-Golgi network. DOI: 10.1111/j.1365-313X.2007.03061.x ; PMID: 17376158
Sequences:
cDNA Sequence
- >AT5G26240.2
GGGGAATGCTGACATTAATACTTTCGATAACAAAAAGAAAATACACTCATTAAACAGAACAAACCTCAGAAACAGAATTTAATTAAAAACCCACAAAATGAATCTAAGATAGTTTGCTTTACAATTCAAAAACCCGTCTCTGTGATTCAAAATCCCTAAATCCAGAGATCGAACTCTCGATCATGTTATCGAATCATCTCCAGAACGGGATCGAATCCGATAACCTACTCTGGTCTCGTGTCCCTGAATCCGATGATACTTCCACCGACGATATTACTCTACTCAACTCTCACCGTGACGGTGACGGAGGTGTCAATAGTCTCGATTACGAAGTCATCGAGAATTACGCTTATAGAGAAGAACAAGCTCATCGAGGAAAGCTTTATGTTGGTTACTACGTTGCTGTCAAATGGTTCTTCTCTTTACTCATCGGGATCGGAACTGGATTAGCTGCTGTGTTCATCAATCTCTCTGTTGAGAATTTCGCTGGATGGAAATTTGCTCTTACTTTTGCTATTATTCAGAAGTCGTATTTTGCTGGGTTTATTGTTTATCTTCTCATCAATTTAGTCTTAGTGTTTTCTTCTGCGTATATTATTACTCAATTTGCTCCTGCTGCTGCTGGTTCTGGCATTCCTGAGATTAAGGGTTATCTCAATGGAATTGATATTCCCGGCACCTTGCTCTTTAGAACTCTCATTGGAAAGATATTTGGAAGCATTGGTTCTGTTGGGGGTGGCTTAGCCTTGGGGAAAGAAGGTCCTCTTGTGCATACAGGTGCCTGCATTGCATCGTTGCTTGGTCAGGGTGGATCTACGAAATATCATTTGAATTCTAGATGGCCGCAACTTTTTAAGAGTGATAGAGATCGGCGTGATCTTGTCACTTGTGGATGTGCAGCTGGAGTTGCTGCTGCCTTTAGAGCCCCAGTTGGTGGAGTGTTATTTGCATTAGAGGAGGTCACATCATGGTGGAGAAGTCAACTTATGTGGCGTGTCTTTTTCACTTCCGCTATTGTGGCTGTTGTTGTGCGTACTGCCATGGGATGGTGCAAGAGTGGAATATGTGGACATTTTGGTGGAGGTGGTTTCATTATATGGGATGTATCAGATGGTCAAGATGACTACTACTTCAAAGAGCTACTGCCAATGGCTGTAATAGGAGTTATCGGAGGGCTACTTGGGGCATTATTTAACCAACTTACACTCTATATGACATCTTGGCGTCGGAACTCTTTGCACAAGAAAGGAAATCGAGTGAAGATAATTGAAGCATGCATCATCTCTTGTATAACTTCAGCTATCTCATTTGGGCTGCCACTCCTAAGAAAATGCAGTCCATGCCCTGAATCAGTTCCTGACTCTGGTATTGAGTGTCCACGACCTCCAGGAATGTATGGAAATTATGTAAATTTCTTCTGCAAGACGGATAACGAATACAATGATCTCGCTACAATTTTCTTCAATACTCAGGATGATGCTATAAGGAATTTGTTCAGCGCAAAAACAATGCGAGAGTTCAGTGCTCAGAGTCTACTAACTTTTCTGGCTATGTTTTACACATTAGCTGTAGTGACCTTTGGCACTGCTGTTCCCGCCGGCCAGTTTGTTCCTGGAATAATGATAGGATCAACTTATGGGCGCCTTGTAGGCATGTTTGTGGTCAGGTTTTATAAGAAGCTCAACATTGAGGAGGGAACTTATGCTTTGCTGGGAGCTGCTTCATTTCTCGGAGGCTCGATGCGGATGACTGTATCTTTATGTGTTATCATGGTTGAAATCACAAATAACCTGAAACTTCTGCCTCTTATAATGTTGGTACTTCTCATCTCAAAGGCCGTCGGTGATGCTTTCAATGAGGGATTATATGAAGTACAAGCACGCCTGAAGGGCATTCCGTTACTTGAATCGAGACCTAAGTATCACATGCGTCAAATGATAGCAAAGGAAGCGTGTCAAAGTCAGAAGGTAATCTCTTTACCTCGAGTTATCAGGGTCGCAGATGTTGCTTCAATTTTGGGCAGCAATAAACATAATGGATTTCCTGTAATCGACCACACGAGAAGTGGTGAAACACTTGTCATAGGGTTAGTCCTTCGGAGTCACTTGCTTGTTCTCCTTCAATCAAAAGTCGATTTCCAACATAGTCCTTTGCCTTGTGATCCAAGTGCCAGGAATATCAGGCACAGTTTTAGCGAGTTTGCTAAACCTGTTTCATCGAAAGGGTTATGCATAGAAGATATACATTTAACTTCAGATGATTTAGAGATGTACATAGATCTTGCTCCATTTTTGAATCCGTCTCCATACGTTGTTCCCGAAGACATGTCCTTGACAAAGGTATACAATCTTTTCCGGCAACTTGGGTTGCGACATCTATTCGTTGTTCCCCGTCCTTCCCGTGTGATAGGCTTGATCACCAGAAAGGATTTACTGATTGAGGAAAATGGGGAATCATCAGCAGTGGAACTCCAACAGTCAACTAGTAGGTCGGTACAGTGAGACAGCAACGCGGATGGACGCTGCACGACCGCTTCTAGACGATCTTTTAGGTTAATAAAACAGACCAAACATATACAAGCAGTTGAAGCTGGTAGCTAAGATCTTTAGTCGGGCCAATTCTTCGTCCATACAAGGATACAAGCTTGTTCCGCATGTTGCCACCCAAATCCGGTATGGAGGATATATGATCGTCTCTTGAGATGGGATTGTGTTGTTCGCTAACCGATCTCATTCTCCGTTCACAGAGAGTAGAAAGATTATATATGTAGAGGGCTTTTGATTGTTGTAATTGTGCAATCTTTGATTATTTTCTTGGTCACTGTAAAATAATCCAGCTTTTGATATATTTACTTGATTAACTTAAAAACCATATTGTAAACAAGAAAGAGAAAACCAGAATTTATCGGTCATACCGCCATGGAAAAATAAATCATATTTTAAAAAGTTGAAAATTTGGAAATAGATG - >AT5G26240.1
GGGGAATGCTGACATTAATACTTTCGATAACAAAAAGAAAATACACTCATTAAACAGAACAAACCTCAGAAACAGAATTTAATTAAAAACCCACAAAATGAATCTAAGATAGTTTGCTTTACAATTCAAAAACCCGTCTCTGTGATTCAAAATCCCTAAATCCAGAGATCGAACTCTCGATCATGTTATCGAATCATCTCCAGAACGGGATCGAATCCGATAACCTACTCTGGTCTCGTGTCCCTGAATCCGATGATACTTCCACCGACGATATTACTCTACTCAACTCTCACCGTGACGGTGACGGAGGTGTCAATAGTCTCGATTACGAAGTCATCGAGAATTACGCTTATAGAGAAGAACAAGCTCATCGAGGAAAGCTTTATGTTGGTTACTACGTTGCTGTCAAATGGTTCTTCTCTTTACTCATCGGGATCGGAACTGGATTAGCTGCTGTGTTCATCAATCTCTCTGTTGAGAATTTCGCTGGATGGAAATTTGCTCTTACTTTTGCTATTATTCAGAAGTCGTATTTTGCTGGGTTTATTGTTTATCTTCTCATCAATTTAGTCTTAGTGTTTTCTTCTGCGTATATTATTACTCAATTTGCTCCTGCTGCTGCTGGTTCTGGCATTCCTGAGATTAAGGGTTATCTCAATGGAATTGATATTCCCGGCACCTTGCTCTTTAGAACTCTCATTGGAAAGATATTTGGAAGCATTGGTTCTGTTGGGGGTGGCTTAGCCTTGGGGAAAGAAGGTCCTCTTGTGCATACAGGTGCCTGCATTGCATCGTTGCTTGGTCAGGGTGGATCTACGAAATATCATTTGAATTCTAGATGGCCGCAACTTTTTAAGAGTGATAGAGATCGGCGTGATCTTGTCACTTGTGGATGTGCAGCTGGAGTTGCTGCTGCCTTTAGAGCCCCAGTTGGTGGAGTGTTATTTGCATTAGAGGAGGTCACATCATGGTGGAGAAGTCAACTTATGTGGCGTGTCTTTTTCACTTCCGCTATTGTGGCTGTTGTTGTGCGTACTGCCATGGGATGGTGCAAGAGTGGAATATGTGGACATTTTGGTGGAGGTGGTTTCATTATATGGGATGTATCAGATGGTCAAGATGACTACTACTTCAAAGAGCTACTGCCAATGGCTGTAATAGGAGTTATCGGAGGGCTACTTGGGGCATTATTTAACCAACTTACACTCTATATGACATCTTGGCGTCGGAACTCTTTGCACAAGAAAGGAAATCGAGTGAAGATAATTGAAGCATGCATCATCTCTTGTATAACTTCAGCTATCTCATTTGGGCTGCCACTCCTAAGAAAATGCAGTCCATGCCCTGAATCAGTTCCTGACTCTGGTATTGAGTGTCCACGACCTCCAGGAATGTATGGAAATTATGTAAATTTCTTCTGCAAGACGGATAACGAATACAATGATCTCGCTACAATTTTCTTCAATACTCAGGATGATGCTATAAGGAATTTGTTCAGCGCAAAAACAATGCGAGAGTTCAGTGCTCAGAGTCTACTAACTTTTCTGGCTATGTTTTACACATTAGCTGTAGTGACCTTTGGCACTGCTGTTCCCGCCGGCCAGTTTGTTCCTGGAATAATGATAGGATCAACTTATGGGCGCCTTGTAGGCATGTTTGTGGTCAGGTTTTATAAGAAGCTCAACATTGAGGAGGGAACTTATGCTTTGCTGGGAGCTGCTTCATTTCTCGGAGGCTCGATGCGGATGACTGTATCTTTATGTGTTATCATGGTTGAAATCACAAATAACCTGAAACTTCTGCCTCTTATAATGTTGGTACTTCTCATCTCAAAGGCCGTCGGTGATGCTTTCAATGAGGGATTATATGAAGTACAAGCACGCCTGAAGGGCATTCCGTTACTTGAATCGAGACCTAAGTATCACATGCGTCAAATGATAGCAAAGGAAGCGTGTCAAAGTCAGAAGGTAATCTCTTTACCTCGAGTTATCAGGGTCGCAGATGTTGCTTCAATTTTGGGCAGCAATAAACATAATGGATTTCCTGTAATCGACCACACGAGAAGTGGTGAAACACTTGTCATAGGGTTAGTCCTTCGGAGTCACTTGCTTGTTCTCCTTCAATCAAAAGTCGATTTCCAACATAGTCCTTTGCCTTGTGATCCAAGTGCCAGGAATATCAGGCACAGTTTTAGCGAGTTTGCTAAACCTGTTTCATCGAAAGGGTTATGCATAGAAGATATACATTTAACTTCAGATGATTTAGAGATGTACATAGATCTTGCTCCATTTTTGAATCCGTCTCCATACGTTGTTCCCGAAGACATGTCCTTGACAAAGGTATACAATCTTTTCCGGCAACTTGGGTTGCGACATCTATTCGTTGTTCCCCGTCCTTCCCGTGTGATAGGCTTGATCACCAGAAAGGATTTACTGATTGAGGAAAATGGGGAATCATCAGCAGTGGAACTCCAACAGTCAACTAGTAGGTCGGTACAGTGAGACAGCAACGCGGATGGACGCTGCACGACCGCTTCTAGACGATCTTTTAGGTTAATAAAACAGACCAAACATATACAAGCAGTTGAAGCTGGTAGCTAAGATCTTTAGTCGGGCCAATTCTTCGTCCATACAAGGATACAAGCTTGTTCCGCATGTTGCCACCCAAATCCGGTATGGAGGATATATGATCGTCTCTTGAGATGGGATTGTGTTGTTCGCTAACCGATCTCATTCTCCGTTCACAGAGAGTAGAAAGATTATATATGTAGAGGGCTTTTGATTGTTGTAATTGTGCAATCTTTGATTATTTTCTTGGTCACTGTAAAATAATCCAGCTTTTGATATATTTACTTGATTAACTTAAAAACCATATTGTAAACAAGAAAGAGAAAACCAGAATTTATCGGTCATACCGCCATGGAAAAATAAATCATATTTTAAAAAGTTGAAAATTTGGAAATAGATG
CDS Sequence
Protein Sequence