Information report for AT5G25890
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0005515 — enables — protein binding
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0009733 — acts upstream of or within — response to auxin
- GO:0010102 — acts upstream of or within — lateral root morphogenesis
- GO:0042802 — enables — identical protein binding
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Phosphate availability alters architecture and causes changes in hormone sensitivity in the Arabidopsis root system. DOI: 10.1104/pp.010934 ; PMID: 12011355
- Genetics of Aux/IAA and ARF action in plant growth and development. DOI: NA ; PMID: 12036262
- The Arabidopsis Aux/IAA protein family has diversified in degradation and auxin responsiveness. DOI: 10.1105/tpc.105.039172 ; PMID: 16489122
- The IBR5 phosphatase promotes Arabidopsis auxin responses through a novel mechanism distinct from TIR1-mediated repressor degradation. DOI: 10.1186/1471-2229-8-41 ; PMID: 18423007
- Transcription factors relevant to auxin signalling coordinate broad-spectrum metabolic shifts including sulphur metabolism. DOI: 10.1093/jxb/ern144 ; PMID: 18596113
- Brassinosteroid signals control expression of the AXR3/IAA17 gene in the cross-talk point with auxin in root development. DOI: 10.1271/bbb.70.768 ; PMID: 16636440
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- A gain-of-function mutation in IAA16 confers reduced responses to auxin and abscisic acid and impedes plant growth and fertility. DOI: 10.1007/s11103-012-9917-y ; PMID: 22580954
- Phloem-mobile Aux/IAA transcripts target to the root tip and modify root architecture. DOI: 10.1111/j.1744-7909.2012.01155.x ; PMID: 22925478
- A survey of dominant mutations in Arabidopsis thaliana. DOI: 10.1016/j.tplants.2012.08.006 ; PMID: 22995285
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. DOI: 10.1104/pp.17.00980 ; PMID: 29233938
- Comparative adventitious root development in pre-etiolated and flooded Arabidopsis hypocotyls exposed to different auxins. DOI: 10.1016/j.plaphy.2018.03.022 ; PMID: 29604522
- [Not Available]. DOI: NA ; PMID: 30484609
- Root-knot nematodes induce gall formation by recruiting developmental pathways of post-embryonic organogenesis and regeneration to promote transient pluripotency. DOI: 10.1111/nph.16521 ; PMID: 32129890
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: Q2VWA1
- EMBL: AK228312, AY669799, GU348625
- AlphaFoldDB: Q2VWA1
- EnsemblPlants: AT5G25890.1
- Gramene: AT5G25890.1
- KEGG: ath:AT5G25890
- Orthologous matrix: FSKKDSW
- ExpressionAtlas: AT5G25890
- InterPro: IPR003311, IPR033389, IPR053793
- PANTHER: PTHR31734, PTHR31734:SF134
- SUPFAM: SSF54277
- PROSITE: PS51745
- Gene3D: 3.10.20.90
- OrthoDB: Q2VWA1
- SWISS-MODEL: Q2VWA1
Sequences
cDNA Sequence
- >AT5G25890.1
TCTTTATATAATAGTAATCGTTGTAAATAATATATGTGTGTCTCCCATCAATCCGCATCACATTCGTAGAATCATACACGTATGTAAACGCATTTTTGACATACGGAAACCATACAAGTAGGATCTGTTAGGTGGTTATTAATTCAAAATAAAATCTCTTTTCATTAGAAAATATAAAGAGACTACTTTTATAAAAAGATTGGGATTGTAGTTCCTTGCCAACCACCCATATAATAATACTCCCCAACACCAAAAACACAACACAAACTTAGAAAAATGGAAGAAGAAAAGAGATTGGAGCTAAGGCTAGCTCCTCCTTGTCACCAATTCACTTCCAACAACAACATCAATGGATCTAAACAAAAAAGCTCGACCAAAGAAACATCATTCCTTTCCAATAACAGGGTTGAGGTAGCTCCAGTGGTGGGATGGCCGCCGGTGAGATCATCCCGGAGAAACCTAACGGCACAACTAAAGGAGGAGATGAAGAAGAAGGAGAGTGATGAAGAGAAGGAATTGTACGTTAAGATCAACATGGAAGGAGTTCCAATAGGAAGAAAAGTCAACCTTTCAGCTTATAACAACTACCAACAGCTTTCACATGCCGTTGACCAACTCTTCTCTAAGAAAGATTCGTGGGATCTAAACAGACAATACACTTTGGTCTACGAAGACACTGAAGGAGATAAAGTTCTGGTCGGGGATGTTCCTTGGGAGATGTTTGTATCTACTGTAAAGAGGTTGCATGTTTTAAAGACCTCCCACGCCTTCTCACTCTCACCTAGAAAACATGGCAAGGAATAGAGAGAGGTTGGCCAAAATCATCAGTTCGATGGTTTGTTTTTAATGTAATTTTTGTGGAAACTAATGGGGTTTGGCTTTGATTTACTGGTTTTCTTTTTCACTTATGTACTAGGTTTTTGCTTGCTATGTTATTTCTTGTTTTGGTTGTAAATATGCTGTTCGTTTAAGAAATCGGGGGTTAGTATGTTATCGTGTGTATAAAAATAGTGTAAGCACGTAAGTTGATTACAATGCCTGATATGATTCATGCCTTCGTTTCGTTTTTTAGTAGGGAAAATGGTATTTAATTAGCGAAATCAAACCGACTCATTTTATGTTTTTTTCAGAGAGGTAAAAATCCAGAGAGCCTGTTTACTATGTATGAGTAAAGATTACCCGAAATAATAGAGAAATAGATACAAGAGGCTATCCAAGTTTGGTGGGTTCGAGTTTTATAACACCATCCAAAAAAAATTGTTGTTTTGTAACACACATGAGTACCAATTGTTTATTTCACAAAAGACAAACCATTTATTTCATGAACTGTAATCTTGTTATGTTCATGAATTATTTCGGTATAACATGTAATTAACTCGAGTAATATCTT
CDS Sequence
Protein Sequence