Information report for AT5G25760
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0007031 — acts upstream of or within — peroxisome organization
- GO:0061631 — enables — ubiquitin conjugating enzyme activity
- GO:0005739 — located in — mitochondrion
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0016558 — acts upstream of or within — protein import into peroxisome matrix
- GO:0006635 — acts upstream of or within — fatty acid beta-oxidation
- GO:0005634 — is active in — nucleus
- GO:0005515 — enables — protein binding
- CS93571 — Compact plant; short internodes; short pedicels; short siliques;, numerous lateral inflorescences; reduced fertility; somewhat short plants; average height = 24 cm.
Functional Keywords
Literature and News
- Ubiquitylation in plants: a post-genomic look at a post-translational modification. DOI: 10.1016/s1360-1385(01)02080-5 ; PMID: 11590065
- How are peroxisomes formed? The role of the endoplasmic reticulum and peroxins. DOI: 10.1016/s1360-1385(01)01951-3 ; PMID: 11378467
- Functional differentiation of peroxisomes revealed by expression profiles of peroxisomal genes in Arabidopsis thaliana. DOI: 10.1093/pcp/pcg173 ; PMID: 14701923
- Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. DOI: 10.1104/pp.105.063743 ; PMID: 16166256
- Expression of arabinogalactan protein genes in pollen tubes of Arabidopsis thaliana. DOI: 10.1007/s00425-005-0137-4 ; PMID: 16228244
- Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22. DOI: 10.1105/tpc.105.035691 ; PMID: 16272432
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. DOI: 10.1038/sj.emboj.7601150 ; PMID: 16724114
- AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis. DOI: 10.1105/tpc.105.037192 ; PMID: 16829592
- Plastid movement impaired 2, a new gene involved in normal blue-light-induced chloroplast movements in Arabidopsis. DOI: 10.1104/pp.106.080333 ; PMID: 16778016
- Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance. DOI: 10.1111/j.1365-313X.2006.02837.x ; PMID: 16889645
- PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis. DOI: 10.1111/j.1365-313X.2006.02928.x ; PMID: 17227548
- Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants. DOI: 10.1093/pcp/pcm053 ; PMID: 17478547
- Arabidopsis thaliana plants acclimated to low dose rates of ultraviolet B radiation show specific changes in morphology and gene expression in the absence of stress symptoms. DOI: 10.1111/j.1469-8137.2007.02092.x ; PMID: 17587374
- yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes. DOI: 10.1104/pp.107.104935 ; PMID: 17885085
- The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress. DOI: 10.1104/pp.107.115121 ; PMID: 18424626
- Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis. DOI: 10.1104/pp.108.121384 ; PMID: 18567827
- Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis. DOI: 10.1105/tpc.107.057851 ; PMID: 18612100
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Root system architecture in Arabidopsis grown in culture is regulated by sucrose uptake in the aerial tissues. DOI: 10.1105/tpc.107.055475 ; PMID: 18952782
- Peroxisome-associated matrix protein degradation in Arabidopsis. DOI: 10.1073/pnas.0811329106 ; PMID: 19246395
- Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data. DOI: 10.1021/pr100249c ; PMID: 20687615
- Reducing PEX13 expression ameliorates physiological defects of late-acting peroxin mutants. DOI: 10.1111/j.1600-0854.2010.01136.x ; PMID: 20969679
- Selection of reference genes for quantitative real-time PCR expression studies of microdissected reproductive tissues in apomictic and sexual Boechera. DOI: 10.1186/1756-0500-4-303 ; PMID: 21851639
- Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. DOI: 10.1186/s12870-015-0660-9 ; PMID: 26556605
- Genetic Interactions between PEROXIN12 and Other Peroxisome-Associated Ubiquitination Components. DOI: 10.1104/pp.16.01211 ; PMID: 27650450
- Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. DOI: 10.1073/pnas.1614852113 ; PMID: 27708161
- Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis. DOI: 10.1104/pp.17.00031 ; PMID: 28153919
- The Histone H3K4 Demethylase JMJ16 Represses Leaf Senescence in Arabidopsis. DOI: 10.1105/tpc.18.00693 ; PMID: 30712008
- OPENER Is a Nuclear Envelope and Mitochondria Localized Protein Required for Cell Cycle Progression in Arabidopsis. DOI: 10.1105/tpc.19.00033 ; PMID: 31023726
- The exogenous application of AtPGLR, an endo-polygalacturonase, triggers pollen tube burst and repair. DOI: 10.1111/tpj.14753 ; PMID: 32215973
- Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures. DOI: 10.1111/plb.13382 ; PMID: 34990067
- The Arabidopsis cyclophilin CYP18-1 facilitates PRP18 dephosphorylation and the splicing of introns retained under heat stress. DOI: 10.1093/plcell/koac084 ; PMID: 35262729
- MCU proteins dominate in vivo mitochondrial Ca2+ uptake in Arabidopsis roots. DOI: 10.1093/plcell/koac242 ; PMID: 35938694
- DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes. DOI: 10.1111/jipb.13386 ; PMID: 36223079
- Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22. DOI: 10.1105/tpc.105.035691 ; PMID: 16272432
Gene Resources
- UniProt: A0A654G461
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G461
- EnsemblPlants: AT5G25760.1, AT5G25760.2
- Gramene: AT5G25760.1, AT5G25760.2
- KEGG: ath:AT5G25760
- Orthologous matrix: WRAVMKG
- ExpressionAtlas: AT5G25760
- InterPro: IPR000608, IPR016135, IPR023313
- PANTHER: PTHR24067
- SUPFAM: SSF54495
- PROSITE: PS00183, PS50127
- Gene3D: 3.10.110.10
- SWISS-MODEL: A0A654G461
- Conserved Domain Database: cd23812
Sequences
cDNA Sequence
- >AT5G25760.2
TCTCTCTCGCTCTCATATTTGCAGGTAAAGCTTCGTTGATTCGTCCTCTTTATGTTCAATTATAGTTTCGCATCCCTCCTATGTCTTTCTTTCTAGATCTTAAAGCAGAGTCATTGCTTAACCCTAATTATCACTGTTCTTGTATAAAACACTTTTCACCTAATCATTGAGATTGTTACGGGATCTGATAATTGCGTCTGTGAATTACAAGAAATTAGGGTTTATTTCTTCTTGATTTTAGATTGATCTTTTTGCAGTTGACAATTCGTTCTCTTTGGGAAATTAGAGATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAGGTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATATTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTTCAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTGACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTGAAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCTAAGAAAGGATGATGATGATGATGATCCTCTTGCTTTTTTTTTGTTTTTTTTTTTGAAATTTGTAATGATATTGATTTGCGAGAGTGAATACATTATTAACGAGAAGAAGATGATTCTTCTTTATTAGTTCACAATATTACAATCTGTCAAGTTGTCATATCTTCTTGTTTAAGGAATTTGTCAAACCAGTCTGATGATTCTTTGATCA - >AT5G25760.1
TCTCTCTCGCTCTCATATTTGCAGGTAAAGCTTCGTTGATTCGTCCTCTTTATGTTCAATTATAGTTTCGCATCCCTCCTATGTCTTTCTTTCTAGATCTTAAAGCAGAGTCATTGCTTAACCCTAATTATCACTGTTCTTGTATAAAACACTTTTCACCTAATCATTGAGATTGTTACGGGATCTGATAATTGCGTCTGTGAATTACAAGAAATTAGGGTTTATTTCTTCTTGATTTTAGATTGATCTTTTTGCAGTTGACAATTCGTTCTCTTTGGGAAATTAGAGATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAGGTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATATTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTTCAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTGACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTGAAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCTAAGAAAGGATGATGATGATGATGATCCTCTTGCTTTTTTTTTGTTTTTTTTTTTGAAATTTGTAATGATATTGATTTGCGAGAGTGAATACATTATTAACGAGAAGAAGATGATTCTTCTTTATTAGTTCACAATATTACAATCTGTCAAGTTGTCATATCTTCTTGTTTAAGGAATTTGTCAAACCAGTCTGATGATTCTTTGATCA
CDS Sequence
Protein Sequence