Gene Details:

• Gene ID: AT5G25760
• Gene Symbol: APEM7, PEX4, UBC21
• Gene Name: peroxin4, ubiquitin-conjugating enzyme 21
• Description: peroxin4;(source:Araport11)
• TAIR Accession: locus:2145269
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G25760.1     AT5G25760.2

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Gene Ontology:

• GO:0007031  — acts upstream of or within — peroxisome organization
• GO:0061631  — enables — ubiquitin conjugating enzyme activity
• GO:0005739  — located in — mitochondrion
• GO:0004842  — enables — ubiquitin-protein transferase activity
• GO:0016558  — acts upstream of or within — protein import into peroxisome matrix
• GO:0006635  — acts upstream of or within — fatty acid beta-oxidation
• GO:0005634  — is active in — nucleus
• GO:0005515  — enables — protein binding

Germplasm Phenotype:

• CS93571  — Compact plant; short internodes; short pedicels; short siliques;, numerous lateral inflorescences; reduced fertility; somewhat short plants; average height = 24 cm.

Function-related keywords:

• root ,  plant sperm cell

Literature:

• Ubiquitylation in plants: a post-genomic look at a post-translational modification.   DOI:  10.1016/s1360-1385(01)02080-5 ;  PMID:  11590065
• How are peroxisomes formed? The role of the endoplasmic reticulum and peroxins.   DOI:  10.1016/s1360-1385(01)01951-3 ;  PMID:  11378467
• Functional differentiation of peroxisomes revealed by expression profiles of peroxisomal genes in Arabidopsis thaliana.   DOI:  10.1093/pcp/pcg173 ;  PMID:  14701923
• Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis.   DOI:  10.1104/pp.105.063743 ;  PMID:  16166256
• Expression of arabinogalactan protein genes in pollen tubes of Arabidopsis thaliana.   DOI:  10.1007/s00425-005-0137-4 ;  PMID:  16228244
• Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22.   DOI:  10.1105/tpc.105.035691 ;  PMID:  16272432
• Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis.   DOI:  10.1104/pp.105.067983 ;  PMID:  16339806
• Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.   DOI:  10.1038/sj.emboj.7601150 ;  PMID:  16724114
• AUXIN RESPONSE FACTOR8 is a negative regulator of fruit initiation in Arabidopsis.   DOI:  10.1105/tpc.105.037192 ;  PMID:  16829592
• Plastid movement impaired 2, a new gene involved in normal blue-light-induced chloroplast movements in Arabidopsis.   DOI:  10.1104/pp.106.080333 ;  PMID:  16778016
• Peroxidase-dependent apoplastic oxidative burst in Arabidopsis required for pathogen resistance.   DOI:  10.1111/j.1365-313X.2006.02837.x ;  PMID:  16889645
• PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis.   DOI:  10.1111/j.1365-313X.2006.02928.x ;  PMID:  17227548
• Functional classification of Arabidopsis peroxisome biogenesis factors proposed from analyses of knockdown mutants.   DOI:  10.1093/pcp/pcm053 ;  PMID:  17478547
• Arabidopsis thaliana plants acclimated to low dose rates of ultraviolet B radiation show specific changes in morphology and gene expression in the absence of stress symptoms.   DOI:  10.1111/j.1469-8137.2007.02092.x ;  PMID:  17587374
• yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes.   DOI:  10.1104/pp.107.104935 ;  PMID:  17885085
• The absence of ALTERNATIVE OXIDASE1a in Arabidopsis results in acute sensitivity to combined light and drought stress.   DOI:  10.1104/pp.107.115121 ;  PMID:  18424626
• Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis.   DOI:  10.1104/pp.108.121384 ;  PMID:  18567827
• Sphingolipid long-chain base hydroxylation is important for growth and regulation of sphingolipid content and composition in Arabidopsis.   DOI:  10.1105/tpc.107.057851 ;  PMID:  18612100
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Root system architecture in Arabidopsis grown in culture is regulated by sucrose uptake in the aerial tissues.   DOI:  10.1105/tpc.107.055475 ;  PMID:  18952782
• Peroxisome-associated matrix protein degradation in Arabidopsis.   DOI:  10.1073/pnas.0811329106 ;  PMID:  19246395
• Identification of novel proteins involved in plant cell-wall synthesis based on protein-protein interaction data.   DOI:  10.1021/pr100249c ;  PMID:  20687615
• Reducing PEX13 expression ameliorates physiological defects of late-acting peroxin mutants.   DOI:  10.1111/j.1600-0854.2010.01136.x ;  PMID:  20969679
• Selection of reference genes for quantitative real-time PCR expression studies of microdissected reproductive tissues in apomictic and sexual Boechera.   DOI:  10.1186/1756-0500-4-303 ;  PMID:  21851639
• Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes.   DOI:  10.1186/s12870-015-0660-9 ;  PMID:  26556605
• Genetic Interactions between PEROXIN12 and Other Peroxisome-Associated Ubiquitination Components.   DOI:  10.1104/pp.16.01211 ;  PMID:  27650450
• Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.   DOI:  10.1073/pnas.1614852113 ;  PMID:  27708161
• Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis.   DOI:  10.1104/pp.17.00031 ;  PMID:  28153919
• The Histone H3K4 Demethylase JMJ16 Represses Leaf Senescence in Arabidopsis.   DOI:  10.1105/tpc.18.00693 ;  PMID:  30712008
• OPENER Is a Nuclear Envelope and Mitochondria Localized Protein Required for Cell Cycle Progression in Arabidopsis.   DOI:  10.1105/tpc.19.00033 ;  PMID:  31023726
• The exogenous application of AtPGLR, an endo-polygalacturonase, triggers pollen tube burst and repair.   DOI:  10.1111/tpj.14753 ;  PMID:  32215973
• Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures.   DOI:  10.1111/plb.13382 ;  PMID:  34990067
• The Arabidopsis cyclophilin CYP18-1 facilitates PRP18 dephosphorylation and the splicing of introns retained under heat stress.   DOI:  10.1093/plcell/koac084 ;  PMID:  35262729
• MCU proteins dominate in vivo mitochondrial Ca2+ uptake in Arabidopsis roots.   DOI:  10.1093/plcell/koac242 ;  PMID:  35938694
• DEMETHYLATION REGULATOR 1 regulates DNA demethylation of the nuclear and mitochondrial genomes.   DOI:  10.1111/jipb.13386 ;  PMID:  36223079
• Identification and functional characterization of Arabidopsis PEROXIN4 and the interacting protein PEROXIN22.   DOI:  10.1105/tpc.105.035691 ;  PMID:  16272432

Sequences: