Information report for AT5G25620
Gene Details
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Functional Descriptions
- GO:0050660 — enables — flavin adenine dinucleotide binding
- GO:0009851 — involved in — auxin biosynthetic process
- GO:0010262 — acts upstream of or within — somatic embryogenesis
- GO:0009851 — acts upstream of or within — auxin biosynthetic process
- GO:0047134 — enables — protein-disulfide reductase (NAD(P)) activity
- GO:0009723 — acts upstream of or within — response to ethylene
- GO:0009819 — acts upstream of or within — drought recovery
- GO:0004497 — enables — monooxygenase activity
- GO:0010038 — involved in — response to metal ion
- GO:0050661 — enables — NADP binding
- GO:0004499 — enables — N,N-dimethylaniline monooxygenase activity
- GO:0006979 — acts upstream of or within — response to oxidative stress
- GO:0103075 — enables — indole-3-pyruvate monooxygenase activity
- CS67234 — epinastic cotyledons, long hypocotyls, curled rosette leaves, increased apical dominance, tall inflorescences, twisted cauline leaves, enlarged seeds. All phenotypes are caused by a gain-of-function yucca6-1D mutation
Functional Keywords
Literature and News
- Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. DOI: 10.1105/tpc.107.053009 ; PMID: 17704214
- yucca6, a dominant mutation in Arabidopsis, affects auxin accumulation and auxin-related phenotypes. DOI: 10.1104/pp.107.104935 ; PMID: 17885085
- Auxin regulates Arabidopsis anther dehiscence, pollen maturation, and filament elongation. DOI: 10.1105/tpc.107.057570 ; PMID: 18628351
- Auxins reverse plant male sterility caused by high temperatures. DOI: 10.1073/pnas.1000869107 ; PMID: 20421476
- YUCCA6 over-expression demonstrates auxin function in delaying leaf senescence in Arabidopsis thaliana. DOI: 10.1093/jxb/err094 ; PMID: 21511905
- Isolation and characterization of two YUCCA flavin monooxygenase genes from cultivated strawberry (Fragaria × ananassa Duch.). DOI: 10.1007/s00299-012-1258-4 ; PMID: 22491872
- SCI1 is a component of the auxin-dependent control of cell proliferation in Arabidopsis upper pistil. DOI: 10.1016/j.plantsci.2014.09.003 ; PMID: 25443839
- The importance of localized auxin production for morphogenesis of reproductive organs and embryos in Arabidopsis. DOI: 10.1093/jxb/erv256 ; PMID: 26019252
- YUCCA-mediated auxin biogenesis is required for cell fate transition occurring during de novo root organogenesis in Arabidopsis. DOI: 10.1093/jxb/erw213 ; PMID: 27255928
- The Thiol Reductase Activity of YUCCA6 Mediates Delayed Leaf Senescence by Regulating Genes Involved in Auxin Redistribution. DOI: 10.3389/fpls.2016.00626 ; PMID: 27242830
- Ethylene and auxin interaction in the control of adventitious rooting in Arabidopsis thaliana. DOI: 10.1093/jxb/erw415 ; PMID: 27831474
- Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL. DOI: 10.1105/tpc.16.00640 ; PMID: 28576846
- An Improved Recombineering Toolset for Plants. DOI: 10.1105/tpc.19.00431 ; PMID: 31666295
- CYCLIC NUCLEOTIDE-GATED ION CHANNEL 2 modulates auxin homeostasis and signaling. DOI: 10.1093/plphys/kiab332 ; PMID: 34618044
- Phytochrome-interacting factors orchestrate hypocotyl adventitious root initiation in Arabidopsis. DOI: 10.1242/dev.200362 ; PMID: 35502748
- Endogenous auxin maintains embryonic cell identity and promotes somatic embryo development in Arabidopsis. DOI: 10.1111/tpj.16024 ; PMID: 36345646
- Local phytochrome signalling limits root growth in light by repressing auxin biosynthesis. DOI: 10.1093/jxb/erad163 ; PMID: 37140032
Gene Resources
- UniProt: F4JY69
- EMBL: CP002688
- AlphaFoldDB: F4JY69
- EnsemblPlants: AT5G25620.2
- Gramene: AT5G25620.2
- ExpressionAtlas: AT5G25620
- InterPro: IPR020946, IPR036188, IPR036291
- PANTHER: PTHR43539, PTHR43539:SF38
- SUPFAM: SSF51735, SSF51905
- Gene3D: 3.50.50.60
- SWISS-MODEL: F4JY69
Sequences
cDNA Sequence
- >AT5G25620.2
GAGAGATAGTCACATCAAAACTAACAATCTCTCTCTCTCTTTCCTATAAGTTTGAATGGCGATTTAAGAGACCCGTAGTTCTCTGATCATCCTCCGGTTTACACTCTCATCAAAACACAAACACAACGCTTATCTCTCTCACTCTCTTTACTCATTCTTCTCATTTGGATAAGATCTCTCTCTTTCTCTCCCTCCTTTTCAGCAGATTCAATCCAAACCCTAACCTCTTTGATTCCGATCTTTAGAGAATATTTCTCTTCAAAAAATCCATTATAAATACTTTTACTTAACTAAAACTTTTTTTTTTACCATCTCTCTTTTTTTTTTTACTTACTCCATATGCCATCAATGTCAAATTGTTCTTTCTGTCCTTTGTTCTTAATTAGTGTCACCACCACCACCACTACTTCTATACTACAAACCCTTCTCGTATTCTCTTAACCAATACGTACTTATTACACCAAAAGTCTCTTTCTCTCTATATATATATAGATAACAGCCAAGAGAGAGAACCAAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAGCACATGACCACCGCGGCATGACGTCACCGCGTCGTATCTGCGTCGTCACCGGTCCGGTGATCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTAAAAGAGAGAGGTATCACGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTATGGCAGCTCAAGACTTATGACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTATACCCTTCCCCGGAGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTACGCTCGGAGGTTTGACATAAAGCCGGAGTTTAACCAAACGGTTGAGTCGGCTGCGTTTGATGAAAACCTTGGGATGTGGCGCGTGACTAGCGTGGGAGAAGAAGGCACGACGGAGTATGTTTGTCGGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTACCTAGGTTTGAGGGGATGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACGTGTCATTATAAAACCGGTGGAGATTTCGCCGGAAAAAGGGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGTTTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTCCTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTGAAATGGCTGCCCATCCGGCTTGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGATACTACCCTTTTAGGTCTTAACAGGCCCCGGTTAGGTCCACTCGAGCTCAAAAATATCTCCGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAAGGTGTGTTCGGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAACAGAGAGATTTGACGCCATTATATTAGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCTAAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATACAAGAGTTCCCTGAGGGATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACAAAACGTGGGATTAGTGGAGCATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCAACTGCAATGCAAATTGGGGAAAAGAATGAAAAGGAAATTTAGTGAGAGTGATTGTGGTGGGAATTGATGATCATCTGCCCCAAAGGAGAGGAGGGGACCCTCTTCTCTTTGCATGCTTATAACCCACTTTGTAAATCTTTCTATACCTTCTTTCTATGTTTCTAATTTTTCTTTTTCTCTTTTCTTTCTTTTATTTTTGTTTTTTTAGATTTCCATAGTTAGGTATGCTCTTTGTTTTTCTTCTCTTTTTTGGTTCAATTTTTTTTGGCAGAGTATTGTGGTGAGGTTTTTTTTGTTTATATACATAATCTTTGTTTTAACTAAACTTACTTTTTTTTA - >AT5G25620.1
GAGAGATAGTCACATCAAAACTAACAATCTCTCTCTCTCTTTCCTATAAGTTTGAATGGCGATTTAAGAGACCCGTAGTTCTCTGATCATCCTCCGGTTTACACTCTCATCAAAACACAAACACAACGCTTATCTCTCTCACTCTCTTTACTCATTCTTCTCATTTGGATAAGATCTCTCTCTTTCTCTCCCTCCTTTTCAGCAGATTCAATCCAAACCCTAACCTCTTTGATTCCGATCTTTAGAGAATATTTCTCTTCAAAAAATCCATTATAAATACTTTTACTTAACTAAAACTTTTTTTTTTACCATCTCTCTTTTTTTTTTTACTTACTCCATATGCCATCAATGTCAAATTGTTCTTTCTGTCCTTTGTTCTTAATTAGTGTCACCACCACCACCACTACTTCTATACTACAAACCCTTCTCGTATTCTCTTAACCAATACGTACTTATTACACCAAAAGTCTCTTTCTCTCTATATATATATAGATAACAGCCAAGAGAGAGAACCAAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAGCACATGACCACCGCGGCATGACGTCACCGCGTCGTATCTGCGTCGTCACCGGTCCGGTGATCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTAAAAGAGAGAGGTATCACGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTATGGCAGCTCAAGACTTATGACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTATACCCTTCCCCGGAGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTACGCTCGGAGGTTTGACATAAAGCCGGAGTTTAACCAAACGGTTGAGTCGGCTGCGTTTGATGAAAACCTTGGGATGTGGCGCGTGACTAGCGTGGGAGAAGAAGGCACGACGGAGTATGTTTGTCGGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTACCTAGGTTTGAGGGGATGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACGTGTCATTATAAAACCGGTGGAGATTTCGCCGGAAAAAGGGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGTTTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTCCTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTGAAATGGCTGCCCATCCGGCTTGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGATACTACCCTTTTAGGTCTTAACAGGCCCCGGTTAGGTCCACTCGAGCTCAAAAATATCTCCGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAAGGTGTGTTCGGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAACAGAGAGATTTGACGCCATTATATTAGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCTAAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATACAAGAGTTCCCTGAGGGATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACAAAACGTGGGATTAGTGGAGCATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCAACTGCAATGCAAATTGGGGAAAAGAATGAAAAGGAAATTTAGTGAGAGTGATTGTGGTGGGAATTGATGATCATCTGCCCCAAAGGAGAGGAGGGGACCCTCTTCTCTTTGCATGCTTATAACCCACTTTGTAAATCTTTCTATACCTTCTTTCTATGTTTCTAATTTTTCTTTTTCTCTTTTCTTTCTTTTATTTTTGTTTTTTTAGATTTCCATAGTTAGGTATGCTCTTTGTTTTTCTTCTCTTTTTTGGTTCAATTTTTTTTGGCAGAGTATTGTGGTGAGGTTTTTTTTGTTTATATACATAATCTTTGTTTTAACTAAACTTACTTTTTTTTA
CDS Sequence
Protein Sequence