Information report for AT5G25390
Gene Details
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Functional Descriptions
- PO:0000115 — socket cell — célula de encaje (Spanish, exact), ソケット細胞 (Japanese, exact), cell located at the base of the trichome (related), trichome support cell (related)
- PO:0005059 — root endodermis — endodermis de la raíz (Spanish, exact), 根内皮 (Japanese, exact)
- PO:0020123 — root cap — caliptra de la raíz (Spanish, exact), rootcap (exact), 根冠（＝kalyptra) (Japanese, exact)
- GO:0005634 — located in — nucleus
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes. DOI: 10.1111/j.1365-313X.2004.02051.x ; PMID: 15078338
- WIN1, a transcriptional activator of epidermal wax accumulation in Arabidopsis. DOI: 10.1073/pnas.0305574101 ; PMID: 15070782
- When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. DOI: 10.1104/pp.103.033431 ; PMID: 15047901
- The SHINE clade of AP2 domain transcription factors activates wax biosynthesis, alters cuticle properties, and confers drought tolerance when overexpressed in Arabidopsis. DOI: 10.1105/tpc.104.022897 ; PMID: 15319479
- Microarray analysis of genes that respond to gamma-irradiation in Arabidopsis. DOI: 10.1021/jf0486895 ; PMID: 15713015
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- SHINE transcription factors act redundantly to pattern the archetypal surface of Arabidopsis flower organs. DOI: 10.1371/journal.pgen.1001388 ; PMID: 21637781
- NFXL2 modifies cuticle properties in Arabidopsis. DOI: 10.4161/psb.19838 ; PMID: 22516817
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). DOI: 10.1007/s00709-015-0775-8 ; PMID: 25687296
- Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. DOI: 10.1016/j.bbalip.2016.03.002 ; PMID: 26965486
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
Gene Resources
- UniProt: A0A178USD7
- EMBL: CACSHJ010000096, LR881470, LUHQ01000005
- AlphaFoldDB: A0A178USD7
- EnsemblPlants: AT5G25390.2
- Gramene: AT5G25390.2
- KEGG: ath:AT5G25390
- Orthologous matrix: EDHMAMQ
- ExpressionAtlas: AT5G25390
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR31194, PTHR31194:SF190
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- OrthoDB: A0A178USD7
- SWISS-MODEL: A0A178USD7
- Conserved Domain Database: cd00018
Sequences
cDNA Sequence
- >AT5G25390.2
AGGGGACATACAATAAATATCAGTAGAGAGGACGTGGGAAAAGCAGAGAGTTAAGTGAGTAGTTGGAGATAGAAAGATCAGAGACGAGGAATCTCTCTCCCACTCTCACTTTCTCTCCTATTCTTAGTTCGTGTCAGAAACACACAGAGAAATTAAGAACCCTAATTTAAAACAGAAGAATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCTGAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAAACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACTAACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGGTCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAGACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAAGTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGACGTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGTCCTGGATCTGGATCCATTGCACAGGTCTAAAGGAGAATCATTGAATTATATGATCAAGATAATAATATAGTTGAGGGTTAATAATAATCGAGGGTAAGTAATTTACGTGTAGCTAATAATTAATATAATTTTCGAACATATATATGAATATATGATAGCTCTAGAAATGAGTACGTATATATACGTAAACATTTTTCCTCAAATATAGTATATGTGTTGTGATTCTAAGACTTGTAAACTGATATGGCCTACTGTTTAAAGAGTAGTTGATATTTTCTATTGAATTTGTGGACATGATATAATTACAGGAGATTAGTATAGTAGTCATTATGATACTTATGAAGGTACAAG - >AT5G25390.1
AGGGGACATACAATAAATATCAGTAGAGAGGACGTGGGAAAAGCAGAGAGTTAAGTGAGTAGTTGGAGATAGAAAGATCAGAGACGAGGAATCTCTCTCCCACTCTCACTTTCTCTCCTATTCTTAGTTCGTGTCAGAAACACACAGAGAAATTAAGAACCCTAATTTAAAACAGAAGAATGGTACATTCGAAGAAGTTCCGAGGTGTCCGCCAGCGTCAGTGGGGTTCTTGGGTTTCTGAGATTCGTCATCCTCTCTTGAAGAGAAGAGTGTGGCTAGGAACATTCGACACGGCGGAAACAGCGGCTAGAGCCTACGACCAAGCCGCGGTTCTAATGAACGGCCAGAGCGCGAAGACTAACTTCCCCGTCATCAAATCGAACGGTTCAAATTCCTTGGAGATTAACTCTGCGTTAAGGTCTCCCAAATCATTATCGGAACTATTGAACGCTAAGCTAAGGAAGAACTGTAAAGACCAGACACCGTATCTGACGTGTCTCCGCCTCGACAACGACAGCTCACACATCGGCGTCTGGCAGAAACGCGCCGGGTCAAAAACGAGTCCAAACTGGGTCAAGCTTGTTGAACTAGGTGACAAAGTTAACGCACGTCCCGGTGGTGATATTGAGACTAATAAGATGAAGGTACGAAACGAAGACGTTCAGGAAGATGATCAAATGGCGATGCAGATGATCGAGGAGTTGCTTAACTGGACCTGTCCTGGATCTGGATCCATTGCACAGGTCTAAAGGAGAATCATTGAATTATATGATCAAGATAATAATATAGTTGAGGGTTAATAATAATCGAGGGTAAGTAATTTACGTGTAGCTAATAATTAATATAATTTTCGAACATATATATGAATATATGATAGCTCTAGAAATGAGTACGTATATATACGTAAACATTTTTCCTCAAATATAGTATATGTGTTGTGATTCTAAGACTTGTAAACTGATATGGCCTACTGTTTAAAGAGTAGTTGATATTTTCTATTGAATTTGTGGACATGATATAATTACAGGAGATTAGTATAGTAGTCATTATGATACTTATGAAGGTACAAG
CDS Sequence
Protein Sequence