Information report for AT5G25220
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000258 — root cortex — cortex de la raíz (Spanish, exact), portion of root cortex tissue (exact), 根皮層 (Japanese, exact)
- PO:0005059 — root endodermis — endodermis de la raíz (Spanish, exact), 根内皮 (Japanese, exact)
- PO:0006203 — pericycle — periciclo (Spanish, exact), portion of pericycle tissue (exact), portion of pericyclic tissue (exact), 内鞘 (Japanese, exact)
- PO:0020135 — root differentiation zone — region of root maturation (exact), root maturation zone (exact), root specialization zone (exact), zona de diferenciación de la raíz (Spanish, exact), 根分化帯（層） (Japanese, exact)
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0071345 — acts upstream of or within — cellular response to cytokine stimulus
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005515 — enables — protein binding
- GO:0009416 — acts upstream of or within — response to light stimulus
- GO:0005634 — located in — nucleus
- GO:0009722 — acts upstream of or within — detection of cytokinin stimulus
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0005829 — located in — cytosol
- SALK_136464 — No visible root phenotype.
- eostre-1/knat3 — Normal embryo sac development.
Functional Keywords
Literature and News
- Three knotted1-like homeobox genes in Arabidopsis. DOI: 10.1007/BF00020208 ; PMID: 8980519
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism. DOI: 10.1105/tpc.104.023705 ; PMID: 15377757
- Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation. DOI: 10.1111/j.1365-313X.2005.02403.x ; PMID: 15918878
- The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. DOI: 10.1104/pp.105.070565 ; PMID: 16428600
- A map of KNAT gene expression in the Arabidopsis root. DOI: 10.1007/s11103-005-1673-9 ; PMID: 16463096
- Cell-fate switch of synergid to egg cell in Arabidopsis eostre mutant embryo sacs arises from misexpression of the BEL1-like homeodomain gene BLH1. DOI: 10.1105/tpc.107.054890 ; PMID: 18055603
- Characterization of KNOX genes in Medicago truncatula. DOI: 10.1007/s11103-008-9307-7 ; PMID: 18274864
- BLH1 and KNAT3 modulate ABA responses during germination and early seedling development in Arabidopsis. DOI: 10.1111/tpj.12236 ; PMID: 23663178
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- The Class II KNOX genes KNAT3 and KNAT7 work cooperatively to influence deposition of secondary cell walls that provide mechanical support to Arabidopsis stems. DOI: 10.1111/tpj.14541 ; PMID: 31587430
- The class II KNOX transcription factors KNAT3 and KNAT7 synergistically regulate monolignol biosynthesis in Arabidopsis. DOI: 10.1093/jxb/eraa266 ; PMID: 32474603
- Understanding the Modus Operandi of Class II KNOX Transcription Factors in Secondary Cell Wall Biosynthesis. DOI: 10.3390/plants11040493 ; PMID: 35214825
- The Class II KNOX family members KNAT3 and KNAT7 redundantly participate in Arabidopsis seed coat mucilage biosynthesis. DOI: 10.1093/jxb/erac066 ; PMID: 35188965
- Transcription factors KNAT3 and KNAT4 are essential for integument and ovule formation in Arabidopsis. DOI: 10.1093/plphys/kiac513 ; PMID: 36342216
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: F4JWP8
- EMBL: CP002688
- AlphaFoldDB: F4JWP8
- EnsemblPlants: AT5G25220.2
- Gramene: AT5G25220.2
- Orthologous matrix: QENHMVW
- ExpressionAtlas: AT5G25220
Sequences
cDNA Sequence
- >AT5G25220.2
GGTGATAATTGAAACATATGAAACAATCGTCGTCATAGAAGCAGCAGAGATTCACCTTCTTTCTTTATCTTTCCCTCTCAGAAACAGGAAACAAAATTCAAAAAGAACAAAAAAAAAAAGGTCAAACCAAAACGATGGCGTTTCATCACAATCATCTCTCACAAGACCTCTCCTTCAATCATTTCACCGACCAACACCAACCTCCACCTCCGCAACCGCCTCCTCCTCCTCCGCAACAGCAACAACATTTCCAAGAAGCACCGCCTCCTAATTGGTTAAACACAGCGCTTCTTCGTTCCTCAGATAACAACAATAACTTCCTCAACCTCCACACAGCCACCGCTAACACCACAACCGCAAGCAGCTCCGATTCTCCTTCCTCCGCCGCCGCCGCCGCCGCTGCTAACCAGTGGCTATCTCGCTCCTCCTCTTTCCTCCAACGAAACAACAACAACAACGCTTCCATAGTCGGAGATGGGATCGATGATGTCACCGGAGGAGCAGACACTATGATTCAGGGAGAGATGAAAACCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGATGGAGTAGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAATCGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGTGTTGCTACTGTGTTCATTTAAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGGAAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTCCTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATGCTAATATGTTCGATGGGGGATTAGATGTGTTGGGTTTTGGTCCTTTGATTCCTACTGAGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGATAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCACTGTATTGAAGAACAAACGCAAAAGGTGACAATAGCGGAAGAGAGCGGTTCGCGTAGAAACAACAAACATATGATGTGAATTGGGGAGGTGGAAGATGGGATTTGAAAGCAGGGTTTTAGGGATTTAAAGTTGAGAATTTTATGGAGGAGTTTGGATTATACAGAGAGAGGGGACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTAACGTAGTTTGGTTATGTGATTATGCCCATATATTTTATTAAGTAGCACACAAACCAAAAAGAAAATATGAAAACTGAAGATGCAGGCTTTTGTTTAATGTTTTTTGTTTGTTTGTCTGCATGAGTTTTTTTTTTATGAACCATCAGATAATCATCATCATCATCCATAATATATCTTGTGAATAAAGATAGTGAGAGAGGAGAACATTGGGATGCACAAGTTTTCTTAATCTACTAGTATATGTTACGCATTGACCAGGTGCATATGTTAATTTGTATCGCACCACTTGGTTAGCTTAATCTATGTGACTATTA - >AT5G25220.1
GGTGATAATTGAAACATATGAAACAATCGTCGTCATAGAAGCAGCAGAGATTCACCTTCTTTCTTTATCTTTCCCTCTCAGAAACAGGAAACAAAATTCAAAAAGAACAAAAAAAAAAAGGTCAAACCAAAACGATGGCGTTTCATCACAATCATCTCTCACAAGACCTCTCCTTCAATCATTTCACCGACCAACACCAACCTCCACCTCCGCAACCGCCTCCTCCTCCTCCGCAACAGCAACAACATTTCCAAGAAGCACCGCCTCCTAATTGGTTAAACACAGCGCTTCTTCGTTCCTCAGATAACAACAATAACTTCCTCAACCTCCACACAGCCACCGCTAACACCACAACCGCAAGCAGCTCCGATTCTCCTTCCTCCGCCGCCGCCGCCGCCGCTGCTAACCAGTGGCTATCTCGCTCCTCCTCTTTCCTCCAACGAAACAACAACAACAACGCTTCCATAGTCGGAGATGGGATCGATGATGTCACCGGAGGAGCAGACACTATGATTCAGGGAGAGATGAAAACCGGCGGTGGAGAAAACAAAAACGACGGCGGAGGAGCTACGGCGGCGGATGGAGTAGTGAGCTGGCAGAATGCGAGACACAAGGCGGAGATCCTTTCGCATCCTCTTTACGAGCAGCTTTTGTCGGCGCACGTTGCTTGTTTGAGAATCGCGACTCCGGTTGATCAGCTTCCGAGAATCGATGCTCAGCTTGCTCAGTCTCAACACGTCGTCGCTAAATACTCAGCTTTAGGCGCCGCCGCTCAAGGTCTCGTCGGCGACGATAAAGAACTTGACCAGTTCATGACACATTATGTGTTGCTACTGTGTTCATTTAAAGAGCAATTGCAACAACATGTGCGTGTTCATGCAATGGAAGCTGTGATGGCTTGTTGGGAGATTGAGCAGTCTCTTCAAAGCTTAACAGGAGTGTCTCCTGGAGAAGGGATGGGAGCAACAATGTCTGACGATGAAGATGAACAAGTAGAGAGTGATGCTAATATGTTCGATGGGGGATTAGATGTGTTGGGTTTTGGTCCTTTGATTCCTACTGAGAGTGAGAGGTCGTTGATGGAAAGAGTTAGACAAGAACTTAAACATGAACTCAAACAGGGTTACAAGGAGAAGATAGTAGACATAAGAGAGGAGATATTAAGGAAGAGAAGAGCTGGGAAGTTACCAGGAGATACCACCTCTGTTCTCAAAGCTTGGTGGCAATCTCATTCCAAATGGCCTTACCCTACTGAGGAAGATAAGGCGAGGTTGGTGCAAGAGACAGGTTTGCAGCTAAAACAGATAAACAATTGGTTCATCAATCAGAGAAAGAGGAACTGGCATAGCAATCCATCTTCTTCCACTGTATTGAAGAACAAACGCAAAAGGTGACAATAGCGGAAGAGAGCGGTTCGCGTAGAAACAACAAACATATGATGTGAATTGGGGAGGTGGAAGATGGGATTTGAAAGCAGGGTTTTAGGGATTTAAAGTTGAGAATTTTATGGAGGAGTTTGGATTATACAGAGAGAGGGGACAGTATTAGAAAGTAACTTTTTGTGCAATTACATAGTAACGTAGTTTGGTTATGTGATTATGCCCATATATTTTATTAAGTAGCACACAAACCAAAAAGAAAATATGAAAACTGAAGATGCAGGCTTTTGTTTAATGTTTTTTGTTTGTTTGTCTGCATGAGTTTTTTTTTTATGAACCATCAGATAATCATCATCATCATCCATAATATATCTTGTGAATAAAGATAGTGAGAGAGGAGAACATTGGGATGCACAAGTTTTCTTAATCTACTAGTATATGTTACGCATTGACCAGGTGCATATGTTAATTTGTATCGCACCACTTGGTTAGCTTAATCTATGTGACTATTA
CDS Sequence
Protein Sequence