Information report for AT5G25060
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0043170 — acts upstream of or within — macromolecule metabolic process
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0005634 — located in — nucleus
- GO:0051301 — acts upstream of or within — cell division
- GO:0005515 — enables — protein binding
- GO:0051252 — acts upstream of or within — regulation of RNA metabolic process
- GO:0003723 — enables — RNA binding
- GO:2000026 — acts upstream of or within — regulation of multicellular organismal development
- GO:0043484 — acts upstream of or within — regulation of RNA splicing
- GO:0005634 — is active in — nucleus
- GO:0051254 — acts upstream of or within — positive regulation of RNA metabolic process
- GO:0048589 — acts upstream of or within — developmental growth
- GO:0051641 — acts upstream of or within — cellular localization
- GO:0048507 — acts upstream of or within — meristem development
- GO:0048364 — acts upstream of or within — root development
Functional Keywords
Literature and News
- The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis. DOI: 10.1111/j.1365-313X.2006.02681.x ; PMID: 16623895
- The RS domain of Arabidopsis splicing factor RRC1 is required for phytochrome B signal transduction. DOI: 10.1111/j.1365-313X.2012.04937.x ; PMID: 22324426
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- Deletion of the RS domain of RRC1 impairs phytochrome B signaling in Arabidopsis. DOI: 10.4161/psb.20854 ; PMID: 22751357
- SWELLMAP 2, a phyB-Interacting Splicing Factor, Negatively Regulates Seedling Photomorphogenesis in Arabidopsis. DOI: 10.3389/fpls.2022.836519 ; PMID: 35222493
- SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis. DOI: 10.1073/pnas.2214565119 ; PMID: 36282917
Gene Resources
- UniProt: A0A5S9Y794
- EMBL: CACSHJ010000096
- AlphaFoldDB: A0A5S9Y794
- EnsemblPlants: AT5G25060.1
- Gramene: AT5G25060.1
- KEGG: ath:AT5G25060
- Orthologous matrix: RRPHICA
- ExpressionAtlas: AT5G25060
- InterPro: IPR000061, IPR000504, IPR003034
- PANTHER: PTHR23140, PTHR23140:SF0
- SUPFAM: SSF109905, SSF48464, SSF54928
- PROSITE: PS50102, PS50128, PS50800
- Gene3D: 1.10.10.790, 1.25.40.90, 3.30.70.330
- OrthoDB: A0A5S9Y794
- SWISS-MODEL: A0A5S9Y794
- Conserved Domain Database: cd12223, cd21371
Sequences
cDNA Sequence
- >AT5G25060.1
ATCCTAATTATTATTTTTCCCTATCTCCCGTTTTTAGCTCGTCTTGTGTTCTCTCCTCGAGCCCTAGCTCGCTTCCTGATCAATCGTCACCTTTCTCGATTCATCCAAACCCTAGTTCCGAATCAGAATCCATAGTCTTCGTATCTTTCTACTTTGATCTTTCTCAATCATCAATTCGGCTTCTCTGTTTCGTTGGGTACAAGTTTCCCGAGGAGCAGTTGGATGCTGAAACAATGAGTTCATTCTCGATCACTCGTAAGAAAACACCATTCCAGAAACACAGAGAAGAAGAAGAAGCTAGGAAGAAGAAAGCAGAGGATGAAACGGCTCGTTTGTATCAAGAATTCGTGGAATCGTTTCAAGGGGATAATGCAACTACTAAGACTTTTGTTCGAGGTGGGACGATAAATCCTGGTGACAAGCCTAAGGTTGATTCTGAAGGTGAAAAGTCCAAAGATGGGGGTTCGGTTTCAAAGAAGGGGAGTAGGTATGTTCCCTCTTTCCTTCCACCACCACTGGCATCCAAGGGTAAAGAACCGGAGAAGAAGAGGGAGGAGGAGAGGCCTAGGGAAAGAGAAAAGGGAAAGACTCGAAATATAGATAATTTCATGGAGGAGTTGAAACGTGAACAAGAAATGAGAGAAAGACGAAACCAGGATCGTGACCGTCAGGGCGATAGCTCGCCATCTAGCCGCTTTGATGAGCTACCTGATGATTTTGATCCCAGTGGGAGGCCAGGATCGTTTGACGATGGTGACCCACAAACTACGAATCTGTATGTTGGGAATCTGTCCCCAAAGGTTGATGAGAATTTCCTTCTGCGCACTTTCGGAAGATTTGGGCCCATAGCTAGTGTCAAGATTATGTGGCCAAGAACAGATGAGGAGAAGAGGCGACAAAGAAACTGTGGCTTTGTTTCCTTCATGAATAGGGCTGATGGACAAGCTGCAAAAGATGAAATGCAAGGGATCATCGTGTACGAGTATGAACTGAAAATTGGATGGGGTAAAGCAGTTTCTCTACCGTCACAAGCATTACCCGCTCCACCACCTGGACATATGGCTATTCGGAGTAAGGAGGGCTGCAACTTGGTTTTTTCTGGTCAAACGGGTCCACCGATAATAACTTCTGTTCCAAATCAAAATTCTGAGCTGGTTCTTACCCCTAATGTTCCGGATATCACTGTTGTTACCCCTGAGGACGAGCACCTCAGACATGTCATTGATACATTGGCACTCTATGTTCTGGATGGTGAATGTGCTTTTGAACAAGCTATCATGGAGAGGGGCCGTGGGAATCCACTGTTCAAGTTTATGTTCGAGCTTGGCTCAAAGGAGCATACTTACTACGTCTGGAGACTATATTCCTTCGCTCAGGGTGATACACTTCAAAGGTGGAGAACAGAGCCGTATATCATGATAACTGGTAGTGGAAGATGGATACCGCCACCACTGCCTGTAACTAGGACCCAGGAGCACGAAAAAGAGTCTGCCAGCACTTATGCGGCGGGAAGAACCAGACGTGCGGAAGTTGAGAGGACTCTGACCGATCCTCAGAGGGATGAGTTCGAGGACATGTTGCGTGCTCTTACTTTAGAAAGGAGTCAGATAAAAGAAGCTATGGGTTTCGCTTTAGATAATGCAGATGCAGCTGGAGAGGTTGTTGAAGTTTTGACGGAGTCCCTGACTCTAAAAGAGACATCAATTCCAACCAAAGTTGCTAGACTCATGCTTGTGTCTGATATTCTTCATAATAGCAGTGCACGTGTTAAAAATGCATCTGCATACCGAACCAAATTCGAAGCAACTCTACCTGATATAATGGAAAGCTTCAATGATCTGTACCGAAGCATAACTGGAAGAATTACTGCTGAGGCTCTAAAAGAACGGGTTCTCAAAGTACTGCAAGTATGGGCAGATTGGTTTCTCTTTTCAGACGCATACATATATGGACTACGTTCCACATTTCTCCGATCAGGAGTCTCTGGTGTTACCTCATTTCATTCTATCTGCGGTGATGCACCTGAAATAGAGAACAAAAGTTACGCTGACAATATGAGTGATATTGGAAAGATAAATCCAGATGCTGCACTGGCAATAGGCAAAGGAGCTGCAAGGCAAGAGCTGATGAATTTACCAATTGCTGAGCTTGAGAGGCGTTGTCGGCACAACGGACTGTCTCTTGTAGGAGGTAGAGTAATGATGGTTACCCGGCTACTAAGCCTTGAAGACACAGAGAAACAACGCGGCTATGAAGCAGTGGATGAAATTCCAAAGCATCCGCAAAACCATTCAACTTGGGAAGAAGTTAAGAGTGAGCGGGAGCATATCAAGAACAGCTACGCAGAGGTTGAAATGAAAGAGCCTGTGAATCTACCCACGACAATACCAATCCCACAGCCTGAGCTGAAAGCCTTTGTGGGAAAAGAGAAGAATGAACTCATATTGCCAGCTTCAAAATGGGCGAGAGACGATGATGAAGCTGATGATGAACAAAAGAGGAGCTCCTCTTCAGGAAGTGACAATACTGGTGGGATAACTTTCAAGGCCGATGGCGAGGATCTCAAGGGAAATGATTGTGTCCGTGCCCAACCTGACAACGGAATGGACGAGGAACAAAGACAAAAGCGGAGACGCATAGAAGTTGCTTTGATAGAGTATCGTGAAACTCTTGAGGAACAGGGGATGAAAAACCCCGAAGAGATAGAGAGAAAAGTAGAAATAAACAGAAAGAGGCTTGAAGTCGATTATGGCTTATCAGGACCTAACGAGGGCAACAGAAATCAGAAATCAATAATAGAGCGGAAGGAGAAGCGTGAAGATTCACAAGAGTCCTCTAAAAAGCGGCACCGTGGGGAAAACAAGAGCCAAAGTCCGCCACGGAAATCATCAACGAGGGAGAGAGATCATGACTTGGGGAGAGACAGGGATAGAGAGAGACACAGAGACAGAGATAGGCAACATGATTTGAACAGGGATCGAGATCGACGTGAAAAGAGTTCAAGCCACGATCGAGACGATAATGATAGAAGCAAAGAGAGAGACAGGGATTGGCGCAGACGAGGCACGAGATGATAATGATGATTATGCTTGTTCTCACCTCATGGTCTGTTCTCAAGATTTTAACCTTTTGTGTTTTTAAATCCAGAAGATATTGTAGAACTTGTTCTCAGACACAGCTTGTAATTTTGTATCCCAATTTCTGAAAGATTTCTCACTCAATTGTTTCTTCTACTGGATTCTTGTTTTTCTTATGGAACTATTTTAGAAATGTAAGTAGATTAGGTAGGTCCCCAAATTCACAAAGAATTGTTTCTTCTATACCAAAAACACACAAACTTGTTATGCATTCAGAGAAAAATGTAGTGTGTGCCTTTTGCACTTTCCAGAAGTAAAAGTGAAGTTCGGCAAAACTGCTGAAAAACTGAAGCATTTGCTTCAAACACTATAATAAAAGAACACTAGCTATCTTCTATCAACAGAGTGAACAAGAGAAGCCAATTCCAAATTCCGAGTTCCTTCTTTTTCATCTTTCTCTTCGTCCGAATCTTCGCCCATTATCTCATCCGGGAGCTTGAACGTGTTTTGATCTCCTTTAGGCACAAGAAACAGAAAACAAAGCGGCAAAAGTCTCATGACATTCCTGACCAAAACCGCAAGCCACAGGTTACCAAACTCAGTCCGAGTCACCTTGAGGACATGCAACATTATCCCTCCAAGCCAAGATGAGGTCATGAGGCCTGCATTGTCAATTGACATTAGCAATGCAAAGAACGTCCCTTCAATTCCGTGGGGACAAAGCTTTGAAGTGAGGACAAGCAGCGGCATCCATTTCAAGCGTCCGATCATCTGAGAAACTATCTCGTCCACTACTATGAAGAGATAATCCGGTAAACCAAATTTTAAGTTGAGACGGAACACAAGAATGAGGTCAAGCATTCCCGATAGAGCAAAGAGAAGTTGAGTCCACAAACAAAGTCCGCGGAACGGATGATCCTTTAGGACTAGTTGGTATAACGTTGCTGCTAGAATCGATCCGATTGAACCAATGGAGAGAATGAAACCAACTGTTTCCTAAAACAGACCAGGTAGGTTCTTCAGCATATTACTTATTTTGGGGTGAAGTTTGAAAATAGAAACTATTTGTTTTGGTAATACCTGAGCAAACAAAGGACCATCC
CDS Sequence
Protein Sequence