Information report for AT5G24850
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0003677 — enables — DNA binding
- GO:0000719 — involved in — photoreactive repair
- GO:0009536 — located in — plastid
- GO:0071949 — enables — FAD binding
- GO:0000719 — acts upstream of or within — photoreactive repair
- GO:0010181 — enables — FMN binding
- GO:0009507 — located in — chloroplast
- GO:0005739 — located in — mitochondrion
- GO:0003729 — enables — mRNA binding
- GO:0003904 — enables — deoxyribodipyrimidine photo-lyase activity
Functional Keywords
Literature and News
- A UV-B-specific signaling component orchestrates plant UV protection. DOI: 10.1073/pnas.0507187102 ; PMID: 16330762
- CONSTITUTIVELY PHOTOMORPHOGENIC1 is required for the UV-B response in Arabidopsis. DOI: 10.1105/tpc.105.040097 ; PMID: 16829591
- Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. DOI: 10.1104/pp.107.098293 ; PMID: 17478635
- UV-B signaling pathways with different fluence-rate response profiles are distinguished in mature Arabidopsis leaf tissue by requirement for UVR8, HY5, and HYH. DOI: 10.1104/pp.107.108456 ; PMID: 18055587
- The transcriptional repressor ARR1-SRDX suppresses pleiotropic cytokinin activities in Arabidopsis. DOI: 10.1104/pp.107.115436 ; PMID: 18502977
- Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. DOI: 10.1105/tpc.108.058040 ; PMID: 18757557
- Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet. DOI: 10.1016/j.jtbi.2011.01.047 ; PMID: 21333657
- The UVR8 UV-B Photoreceptor: Perception, Signaling and Response. DOI: 10.1199/tab.0164 ; PMID: 23864838
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Cell type-specific proteomics uncovers a RAF15-SnRK2.6/OST1 kinase cascade in guard cells. DOI: 10.1111/jipb.13536 ; PMID: 37226855
- An Arabidopsis protein closely related to Synechocystis cryptochrome is targeted to organelles. DOI: 10.1046/j.1365-313x.2003.01787.x ; PMID: 12834405
Gene Resources
- UniProt: A0A5S9Y6Z1
- EMBL: CACRSJ010000110, CACSHJ010000096
- AlphaFoldDB: A0A5S9Y6Z1
- EnsemblPlants: AT5G24850.1
- Gramene: AT5G24850.1
- KEGG: ath:AT5G24850
- Orthologous matrix: NVQGKWS
- ExpressionAtlas: AT5G24850
- InterPro: IPR002081, IPR005101, IPR006050
- PANTHER: PTHR11455, PTHR11455:SF22
- SUPFAM: SSF48173, SSF52425
- PROSITE: PS51645
- Gene3D: 1.10.579.10, 1.25.40.80, 3.40.50.620
- OrthoDB: A0A5S9Y6Z1
- SWISS-MODEL: A0A5S9Y6Z1
Sequences
cDNA Sequence
- >AT5G24850.1
CGCATCCACAACTCGTCAAAACACAAACACCAAAAAGTAGATGACGTTACAAAGCATCATCCGTAAATGGCGGCTTCCTCTCTCTCGCTCTCTTCTCCTCTCTCAAACCCACTTCGCAGATTCACTCTTCACCATCTTCACCTCTCAAAGAAACCCCTTTCTTCCTCTTCTCTGTTCCTCTGCTCCGCCGCAAAAATGAACGACCATATCCACCGTGTTCCGGCTCTCACCGAGGAAGAGATTGACTCCGTCGCCATAAAAACATTTGAGAGATACGCATTACCTTCTTCTTCCTCCGTTAAGAGAAAGGGGAAAGGAGTAACGATTCTCTGGTTCAGAAACGATCTCAGAGTTCTTGACAATGACGCATTGTACAAAGCTTGGTCTTCCTCTGATACCATTTTGCCTGTTTACTGTCTCGATCCTCGTCTCTTTCACACTACTCATTTCTTCAACTTCCCTAAAACCGGAGCTTTAAGAGGCGGTTTTCTTATGGAATGTTTGGTTGATTTGAGAAAGAATCTTATGAAACGAGGATTGAATCTTCTTATTAGAAGTGGTAAACCAGAAGAGATTCTTCCTTCTCTTGCTAAAGATTTTGGAGCTCGTACAGTTTTTGCGCATAAAGAAACGTGTAGTGAGGAGGTAGACGTTGAAAGACTTGTGAATCAAGGTTTGAAAAGGGTTGGAAATAGTACTAAGCTTGAGCTCATTTGGGGAAGTACTATGTATCACAAAGATGATCTTCCTTTTGATGTTTTTGACTTGCCTGATGTCTACACTCAGTTTCGTAAGTCGGTGGAAGCTAAGTGTAGTATCAGAAGCTCTACTCGCATTCCACTATCTCTAGGGCCAACACCTTCTGTTGATGATTGGGGAGATGTTCCAACTCTTGAGAAACTTGGGGTTGAGCCTCAAGAGGTAACCAGAGGAATGCGATTCGTTGGTGGTGAAAGTGCAGGAGTAGGCAGAGTATTTGAGTACTTTTGGAAAAAGGATCTATTGAAAGTATACAAAGAGACGAGGAACGGAATGTTAGGACCTGATTATTCGACGAAATTCTCTCCTTGGCTTGCCTTTGGGTGTATCTCTCCTCGTTTTATCTATGAAGAGGTCCAAAGATATGAAAAGGAAAGAGTAGCAAATAATTCAACATACTGGGTACTTTTTGAACTAATATGGAGAGATTACTTCAGGTTTCTTTCAATTAAGTGTGGAAACTCACTTTTTCATCTAGGTGGCCCGAGAAATGTGCAAGGGAAGTGGAGCCAAGATCAGAAACTATTTGAGTCTTGGAGAGATGCCAAGACAGGGTATCCTCTTATAGATGCAAACATGAAGGAGTTATCCACTACAGGTTTCATGTCAAATCGAGGCCGACAGATTGTTTGTTCGTTTCTTGTCCGGGACATGGGGTTGGATTGGCGTATGGGTGCAGAATGGTTTGAGACATGTCTATTAGACTATGATCCTTGTTCTAATTATGGAAACTGGACCTATGGAGCAGGAGTTGGAAATGATCCACGGGAAGACCGGTACTTCAGCATTCCCAAGCAAGCACAAAACTATGATCCAGAAGGAGAATACGTTGCGTTTTGGCTGCAGCAGCTACGTCGGCTTCCGAAAGAGAAAAGACATTGGCCAGGGAGATTGATGTATATGGACACAGTTGTGCCATTGAAGCATGGTAATGGTCCAATGGCTGGAGGGTCAAAGTCTGGGGGTGGCTTCAGAGGGAGTCACAGTGGGAGACGTTCTAGACACAATGGTCCTTAGAGAGAAACTATTCTTTACACGAACTTGTATCTTATTTTTATTTCTGTGATTCTTCATTCTTGTGCACAAGGATCTCTGATTCTCTCGGTCTAAATTACATTGACTTAAAAAATTCATACTCCAAAATTTCTAAAACATTAT
CDS Sequence
Protein Sequence