Information report for AT5G24590
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0071456 — acts upstream of or within — cellular response to hypoxia
- GO:0002230 — involved in — positive regulation of defense response to virus by host
- GO:0051607 — acts upstream of or within — defense response to virus
- GO:0005634 — located in — nucleus
- GO:0003677 — enables — DNA binding
- GO:0002237 — involved in — response to molecule of bacterial origin
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005515 — enables — protein binding
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0009615 — involved in — response to virus
- GO:0003713 — enables — transcription coactivator activity
- GO:0016032 — involved in — viral process
- SALK_150356C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:no change,cold:decreased,oxidative stress:no change,osmotic stress:decreased,salt stress:no change,ABA:no change,hypoxia:no change.
- gelp77-1 — Progeny segregate for male sterile at 3:1
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DOI: 10.1093/dnares/10.6.239 ; PMID: 15029955
- Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors. DOI: 10.1038/sj.embor.7400093 ; PMID: 15083810
- Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. DOI: 10.1104/pp.105.070110 ; PMID: 16244138
- The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. DOI: 10.1105/tpc.105.035568 ; PMID: 16214899
- Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. DOI: 10.1111/j.1365-313X.2006.02672.x ; PMID: 16553893
- Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. DOI: 10.1186/gb-2007-8-4-r49 ; PMID: 17408486
- The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. DOI: 10.1093/jxb/ern155 ; PMID: 18552355
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Enhanced Y1H assays for Arabidopsis. DOI: 10.1038/nmeth.1750 ; PMID: 22037706
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A654G3R9
- EMBL: CACRSJ010000110, LR881470
- AlphaFoldDB: A0A654G3R9
- EnsemblPlants: AT5G24590.2
- Gramene: AT5G24590.2
- KEGG: ath:AT5G24590
- Orthologous matrix: WLSFMEF
- ExpressionAtlas: AT5G24590
- InterPro: IPR003441, IPR036093
- PANTHER: PTHR31744, PTHR31744:SF216
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- SWISS-MODEL: A0A654G3R9
Sequences
cDNA Sequence
- >AT5G24590.2
TTACATTCTGTTTTGCCTTTTACGCGTAACGAACGTGGTTTTGTGTTTTATGACTTTCTGGGAAACAGTGGTACGCCTATCCACGCGCCACTTTTTCATCTCTTTGTCTTTGATATCTCTCTTGTCTGACCAAATCGTGTCACATCTCCTTCTTCTCCACTTTACCAAATCGTGTCAAATTTTAGGGTTTTTTCTTTTCGTACTTCATCAAATTCTGGAATCTGGTTTTTTCTTAGTTTTCTTCTATATACCTTTGAATCGCATCTTTGATCCAAATTCATTTTAGATATCACCTTGAAGTCGAATTTGTGATTTTTTCTTTTCCTCTCGAATTCTCAAAGTCTCACGCAACTATGAAAGAAGACATGGAAGTACTATCGCTCGCTTCACTACCGGTTGGGTTCAGATTTAGTCCAACGGACGAAGAGTTAGTCCGGTACTATCTCCGGCTCAAGATCAACGGTCACGATAACGACGTTAGAGTAATTCGTGAGATCGATATCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTTTCTGTGGTGAAGACAACAGACTCAGAGTGGCTCTTCTTTTGTCCTTTGGACCGGAAATATCCGAGTGGAAGTCGAATGAATAGAGCTACTGTGGCTGGATACTGGAAGGCGACGGGAAAAGACCGTAAGATCAAATCAGGAAAGACTAAGATTATAGGTGTTAAGAGGACTCTAGTGTTTTATACAGGTCGTGCTCCTAAAGGGACACGAACTTGTTGGATTATGCATGAGTATCGTGCTACTGAGAAGGATCTTGATGGAACAAAGTCTGGCCAGAATCCGTTTGTTGTTTGTAAGTTGTTTAAGAAGCAAGATATTGTGAACGGAGCTGCTGAACCAGAAGAGTCAAAGTCATGTGAAGTTGAACCAGCGGTATCGTCTCCAACTGTTGTGGACGAGGTTGAAATGTCTGAGGTATCTCCTGTTTTCCCTAAAACAGAAGAGACTAATCCTTGTGACGTCGCAGAGTCTTCTCTTGTAATCCCCAGCGAATGTCGTAGTGGATACTCTGTCCCTGAGGTTACAACCACCGGGCTTGACGATATCGATTGGCTCTCGTTTATGGAGTTTGATTCCCCGAAGCTGTTCTCTCCGTTGCACTCTCAGGTGCAATCTGAGCTCGGTTCCTCTTTCAATGGCTTACAATCTGAGTCTAGTGAATTGTTCAAAAACCACAATGAGGATTACATTCAGACTCAGTACGGTACAAATGATGCGGATGAATATATGTCCAAGTTCTTGGATTCTTTTCTTGACATTCCCTATGAGCCAGAACAGATCCCATATGAGCCACAGAATCTTAGCTCATGCAACAAGATCAATGATGAATCTAAGAGAGGAATTAAGATTAGAGCTCGACGAGCACAAGCCCCGGGTTGTGCTGAGCAGTTTGTAATGCAGGGCGATGCCTCAAGAAGGCTGCGTCTTCAGGTTAACCTTAACAGCCACAAGTCAGAAACTGACAGTACACAACTTCAATTTATCAAGAAAGAGGTTAAGGACACAACAACGGAAACTATGACGAAAGGATGTGGAAATTTCACAAGATCAAAGAGCAGGACTAGTTTCATATTCAAGAAAATTGCAGCCATGGGATGTTCATACAGAGGGCTTTTCAGAGTCGGTGTGGTAGCGGTTGTGTGTGTGATGTCGGTCTGCAGTCTAGTCGCATAAATCCGCTGAATGTGATGTTTGTTCCGATCAATTCATATAGTAAGAATAAAGAAAGTGGTTTTTACGGGTGGAGAGAGCGCGGATTTGTGTGTATAACAGGGGTTTTGGCCTGGTTCTGCATCTGTTGTTATTGTTGTTGTTTTTGTCGGCTTAAGCTTAACCATGGTCGGTTTAGGAGTGTAGTAGACTTGTAGTTAACATGTACGACGACTCATAATATTCAGATGGTAATGTTTGGAAATTTTTTTATTCCTGACCACATGTGTCTTGAGATTGCGTTTTTGACATTTTTAGTAGCCTTGTACAATCAGAAACAAACTACGAGTTCGAATGGTAGCACCGTAATGAAAACGGTGTCAAACATGTTAGTACGAACCGACCGGGTAGAGATATTTATTAGAGGTGTGTTTATTTCGTATATCATTAAACATGTTTAGTATGATAGGACGGTTTGATTGAGGGTATGGACTGTTAAACATGTCATTTGGGTATTTTATGGCATTAAGTATGCCCAGTAATATATTACAAAATTTTTGGACAAAAGA
CDS Sequence
Protein Sequence