Gene Details:

• Gene ID: AT5G24400
• Gene Symbol: EMB2024, PGL3
• Gene Name: EMBRYO DEFECTIVE 2024, 6-PHOSPHOGLUCONOLACTONASE 3
• Description: NagB/RpiA/CoA transferase-like superfamily protein;(source:Araport11)
• TAIR Accession: locus:2152906
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G24400.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025025  — root system — sistema de raíz (Spanish, exact), 根系 (Japanese, exact), root (broad)

Gene Ontology:

• GO:0009507  — located in — chloroplast
• GO:0009570  — located in — chloroplast stroma
• GO:0009793  — acts upstream of or within — embryo development ending in seed dormancy
• GO:0042742  — acts upstream of or within — defense response to bacterium
• GO:0005975  — involved in — carbohydrate metabolic process
• GO:0017057  — enables — 6-phosphogluconolactonase activity
• GO:0009051  — involved in — pentose-phosphate shunt, oxidative branch
• GO:0002229  — acts upstream of or within — defense response to oomycetes
• GO:0005515  — enables — protein binding
• GO:0005777  — located in — peroxisome
• GO:0071461  — acts upstream of or within — cellular response to redox state

Germplasm Phenotype:

• CS2105660  — Sugar sensitive seedling

Function-related keywords:

• root ,  collective leaf structure ,  root system

Literature:

• Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis.   DOI:  10.1002/elps.200305608 ;  PMID:  14595688
• Functional differentiation of peroxisomes revealed by expression profiles of peroxisomal genes in Arabidopsis thaliana.   DOI:  10.1093/pcp/pcg173 ;  PMID:  14701923
• Identification of genes required for embryo development in Arabidopsis.   DOI:  10.1104/pp.104.045179 ;  PMID:  15266054
• AraPerox. A database of putative Arabidopsis proteins from plant peroxisomes.   DOI:  10.1104/pp.104.043695 ;  PMID:  15333753
• Identification of Arabidopsis salt and osmotic stress responsive proteins using two-dimensional difference gel electrophoresis and mass spectrometry.   DOI:  10.1002/pmic.200401282 ;  PMID:  16254930
• Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.   DOI:  10.1105/tpc.107.050989 ;  PMID:  17951448
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.   DOI:  10.1104/pp.110.168120 ;  PMID:  21139083
• Dual-targeting of Arabidopsis 6-phosphogluconolactonase 3 (PGL3) to chloroplasts and peroxisomes involves interaction with Trx m2 in the cytosol.   DOI:  10.1093/mp/sst126 ;  PMID:  24008768
• Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis.   DOI:  10.1111/nph.16071 ;  PMID:  31334862
• The Arabidopsis Plastidial Glucose-6-Phosphate Transporter GPT1 is Dually Targeted to Peroxisomes via the Endoplasmic Reticulum.   DOI:  10.1105/tpc.19.00959 ;  PMID:  32111666
• Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms.   DOI:  10.1105/tpc.107.050989 ;  PMID:  17951448
• Sorting signals, N-terminal modifications and abundance of the chloroplast proteome.   DOI:  10.1371/journal.pone.0001994 ;  PMID:  18431481
• Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis.   DOI:  10.1104/pp.108.124545 ;  PMID:  18633119
• Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.   DOI:  10.1021/pr1009433 ;  PMID:  21166475
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: