Gene Details:

• Gene ID: AT5G24330
• Gene Symbol: ATXR6, SDG34
• Gene Name: ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6, SET DOMAIN PROTEIN 34
• Description: TRITHORAX-RELATED PROTEIN 6;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G24330.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Germplasm Phenotype:

• atxr5 atrx6  — reduced H3K27me1 in vivo; partial heterochromatin decondensation; transcriptional activation of repressed heterochromatic elements

Function-related keywords:

• root ,  plant sperm cell

Literature:

• Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots.   DOI:  10.1104/pp.102.013722 ;  PMID:  12805620
• Genome-wide identification of potential plant E2F target genes.   DOI:  10.1104/pp.105.066290 ;  PMID:  16126853
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis.   DOI:  10.1111/j.1365-313X.2006.02799.x ;  PMID:  16771839
• Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome.   DOI:  10.1016/j.cell.2012.10.054 ;  PMID:  23313553
• Selective methylation of histone H3 variant H3.1 regulates heterochromatin replication.   DOI:  10.1126/science.1248357 ;  PMID:  24626927
• Identification of Multiple Proteins Coupling Transcriptional Gene Silencing to Genome Stability in Arabidopsis thaliana.   DOI:  10.1371/journal.pgen.1006092 ;  PMID:  27253878
• Molecular basis for the methylation specificity of ATXR5 for histone H3.   DOI:  10.1093/nar/gkx224 ;  PMID:  28383693
• Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes.   DOI:  10.1101/gad.301499.117 ;  PMID:  28882854
• Computational characterization of substrate and product specificities, and functionality of S-adenosylmethionine binding pocket in histone lysine methyltransferases from Arabidopsis, rice and maize.   DOI:  10.1002/prot.25399 ;  PMID:  29024026
• Arabidopsis Serrate Coordinates Histone Methyltransferases ATXR5/6 and RNA Processing Factor RDR6 to Regulate Transposon Expression.   DOI:  10.1016/j.devcel.2018.05.023 ;  PMID:  29920280
• H3.1K27me1 maintains transcriptional silencing and genome stability by preventing GCN5-mediated histone acetylation.   DOI:  10.1093/plcell/koaa027 ;  PMID:  33793815

Sequences: