Gene Details:

• Gene ID: AT5G24120
• Gene Symbol: ATSIG5, SIG5, SIGE
• Gene Name: SIGMA FACTOR 5, SIGMA FACTOR 5, sigma factor E
• Description: sigma factor E;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G24120.1     AT5G24120.3     AT5G24120.2

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)

Germplasm Phenotype:

• SALK_141393 (homo)  — Under FRc conditions, the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions, the hypocotyl length is decreased and the cotyledon area is smaller than that of wild type.
• sig5  — embryo defective

Function-related keywords:

• root

Literature:

• Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Aarabidopsis thaliana.   DOI:  10.1016/s0014-5793(00)01965-7 ;  PMID:  10984613
• The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins.   DOI:  10.1105/tpc.012955 ;  PMID:  12897258
• phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation.   DOI:  10.1111/j.1365-313X.2006.02914.x ;  PMID:  17076805
• Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters.   DOI:  10.1111/j.1365-313X.2008.03567.x ;  PMID:  18532976
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.   DOI:  10.1104/pp.110.168120 ;  PMID:  21139083
• Plastids are major regulators of light signaling in Arabidopsis.   DOI:  10.1104/pp.112.193599 ;  PMID:  22383539
• Chloroplast RNA polymerases: Role in chloroplast biogenesis.   DOI:  10.1016/j.bbabio.2015.02.004 ;  PMID:  25680513
• Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5.   DOI:  10.1111/tpj.12876 ;  PMID:  25976841
• SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.   DOI:  10.1104/pp.15.01112 ;  PMID:  26304848
• Expression of the Arabidopsis Sigma Factor SIG5 Is Photoreceptor and Photosynthesis Controlled.   DOI:  10.3390/plants3030359 ;  PMID:  27135509
• ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress.   DOI:  10.1038/srep45492 ;  PMID:  28358040
• Differential impact of heat stress on the expression of chloroplast-encoded genes.   DOI:  10.1016/j.plaphy.2018.05.023 ;  PMID:  29852366
• Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance.   DOI:  10.1104/pp.19.00070 ;  PMID:  30760637
• Transcription is a major driving force for plastid genome instability in Arabidopsis.   DOI:  10.1371/journal.pone.0214552 ;  PMID:  30943245
• A dual-specificity phosphatase, MAP kinase phosphatase 1, positively regulates blue light-mediated seedling development in Arabidopsis.   DOI:  10.1007/s00425-021-03649-6 ;  PMID:  34057637
• phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation.   DOI:  10.1111/j.1365-313X.2006.02914.x ;  PMID:  17076805

Sequences: