Information report for AT5G24120
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- SALK_141393 (homo) — Under FRc conditions, the length mutant hypocotyls is decreased compared to that of wild-type plants. Under Rc conditions, the hypocotyl length is decreased and the cotyledon area is smaller than that of wild type.
- sig5 — embryo defective
Functional Keywords
Literature and News
- Three new nuclear genes, sigD, sigE and sigF, encoding putative plastid RNA polymerase sigma factors in Aarabidopsis thaliana. DOI: 10.1016/s0014-5793(00)01965-7 ; PMID: 10984613
- The Arabidopsis ppi1 mutant is specifically defective in the expression, chloroplast import, and accumulation of photosynthetic proteins. DOI: 10.1105/tpc.012955 ; PMID: 12897258
- phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. DOI: 10.1111/j.1365-313X.2006.02914.x ; PMID: 17076805
- Light induction of Arabidopsis SIG1 and SIG5 transcripts in mature leaves: differential roles of cryptochrome 1 and cryptochrome 2 and dual function of SIG5 in the recognition of plastid promoters. DOI: 10.1111/j.1365-313X.2008.03567.x ; PMID: 18532976
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Plastids are major regulators of light signaling in Arabidopsis. DOI: 10.1104/pp.112.193599 ; PMID: 22383539
- Chloroplast RNA polymerases: Role in chloroplast biogenesis. DOI: 10.1016/j.bbabio.2015.02.004 ; PMID: 25680513
- Abscisic acid affects transcription of chloroplast genes via protein phosphatase 2C-dependent activation of nuclear genes: repression by guanosine-3'-5'-bisdiphosphate and activation by sigma factor 5. DOI: 10.1111/tpj.12876 ; PMID: 25976841
- SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. DOI: 10.1104/pp.15.01112 ; PMID: 26304848
- Expression of the Arabidopsis Sigma Factor SIG5 Is Photoreceptor and Photosynthesis Controlled. DOI: 10.3390/plants3030359 ; PMID: 27135509
- ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. DOI: 10.1038/srep45492 ; PMID: 28358040
- Differential impact of heat stress on the expression of chloroplast-encoded genes. DOI: 10.1016/j.plaphy.2018.05.023 ; PMID: 29852366
- Extrachloroplastic PP7L Functions in Chloroplast Development and Abiotic Stress Tolerance. DOI: 10.1104/pp.19.00070 ; PMID: 30760637
- Transcription is a major driving force for plastid genome instability in Arabidopsis. DOI: 10.1371/journal.pone.0214552 ; PMID: 30943245
- A dual-specificity phosphatase, MAP kinase phosphatase 1, positively regulates blue light-mediated seedling development in Arabidopsis. DOI: 10.1007/s00425-021-03649-6 ; PMID: 34057637
- phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. DOI: 10.1111/j.1365-313X.2006.02914.x ; PMID: 17076805
Gene Resources
- UniProt: A0A178URC9
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178URC9
- EnsemblPlants: AT5G24120.1, AT5G24120.2, AT5G24120.3
- Gramene: AT5G24120.1, AT5G24120.2, AT5G24120.3
- KEGG: ath:AT5G24120
- Orthologous matrix: KITPERY
- ExpressionAtlas: AT5G24120
- InterPro: IPR000943, IPR007624, IPR007627
- PANTHER: PTHR30603, PTHR30603:SF4
- SUPFAM: SSF88659, SSF88946
- Gene3D: 1.10.10.10, 1.10.601.10
- SWISS-MODEL: A0A178URC9
Sequences
cDNA Sequence
- >AT5G24120.2
TAATCTGTGGACACCATAATTTACGTAGTTCATTGCGACACATATTTTCGTATTCCACTCCAATTTTTATTTTTCTCTACTTCTATTTAAAATTCGTGAACCAGAATCTAAAATCGAACGAAGATTCTCTTGCTCGAACAAAAAAATTCTCTCCGCGATACTTACAAAGCACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGTTGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGACACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAATTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGAGAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTTGGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAGACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGAAGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAGAAAAAGGAAAGAAAGTGGTGAGGAGAAGAAAGTGGTTGTGAGGAATAATGTGAAGAAGGAAAAACGTATGAGTCTTGATAAACGGATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGTAACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTCTAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTACTGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGATGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAATATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACTTATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTACCAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAATTGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAGACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGAATCGGTTAGAGTGGAGATATATAAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGACCTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAGTATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAGAATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTGCTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGGTTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTGGAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGCTTAAGCATCAGGCCAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAACCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGAACACTGAACCGGTGTGAAATTCAACCAATGTTGAGTCCGGTTAATTGAACTTTAAATTGCTTAAAACCGGTTAAGAGCGGGGCTAAAGATTCTTAAAAGAGTTGAACAGGAATGTTACACCGTTGATTCTCGCCTTCGTGAAGTCGATTACACGGCAACGACTTCGTTGCCCTTGTCTAATCATAAATTTTCTGCCGTATTCAAATAGATCATGATTGGTTTATATGTATCTATGGTTCTAATTAATATCCTCAAAGTTGAATTATCTTAGTCATGGTGAATACTGAAGAAAACCTATA - >AT5G24120.3
TAATCTGTGGACACCATAATTTACGTAGTTCATTGCGACACATATTTTCGTATTCCACTCCAATTTTTATTTTTCTCTACTTCTATTTAAAATTCGTGAACCAGAATCTAAAATCGAACGAAGATTCTCTTGCTCGAACAAAAAAATTCTCTCCGCGATACTTACAAAGCACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGTTGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGACACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAATTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGAGAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTTGGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAGACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGAAGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAGAAAAAGGAAAGAAAGTGGTGAGGAGAAGAAAGTGGTTGTGAGGAATAATGTGAAGAAGGAAAAACGTATGAGTCTTGATAAACGGATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGTAACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTCTAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTACTGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGATGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAATATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACTTATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTACCAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAATTGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAGACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGAATCGGTTAGAGTGGAGATATATAAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGACCTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAGTATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAGAATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTGCTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGGTTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTGGAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGCTTAAGCATCAGGCCAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAACCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGAACACTGAACCGGTGTGAAATTCAACCAATGTTGAGTCCGGTTAATTGAACTTTAAATTGCTTAAAACCGGTTAAGAGCGGGGCTAAAGATTCTTAAAAGAGTTGAACAGGAATGTTACACCGTTGATTCTCGCCTTCGTGAAGTCGATTACACGGCAACGACTTCGTTGCCCTTGTCTAATCATAAATTTTCTGCCGTATTCAAATAGATCATGATTGGTTTATATGTATCTATGGTTCTAATTAATATCCTCAAAGTTGAATTATCTTAGTCATGGTGAATACTGAAGAAAACCTATA - >AT5G24120.1
TAATCTGTGGACACCATAATTTACGTAGTTCATTGCGACACATATTTTCGTATTCCACTCCAATTTTTATTTTTCTCTACTTCTATTTAAAATTCGTGAACCAGAATCTAAAATCGAACGAAGATTCTCTTGCTCGAACAAAAAAATTCTCTCCGCGATACTTACAAAGCACAAGTGAGCTAGCTTTGAGAAAGATTCAATTTTTGAGCCTTAAGATTGTGATGGGAGTTGTGTCTATTTCAAGTTCAGCTGCAAGATCTCCACTCGGGTTGGGCAACGATCTTTTGACACATCGGTCTTCACTTAAAAAGCCATCCATTGTTGCTTTTAAAGCCGATGATTCCAGCAATTCAGCTTTGATCATTCCTCCTCGTGAGCAAGTTTTGATTCCTGCTGAAAAGCATAATGAGAAGAAGAGAGAAGTAACGAGGAGAAAGCCTTGTAAAACCCCGAAAAAACCGCTTTCCTTGGAACATAATTCGGCTCCTTCGTGTTCGTTAGGAGTAGATTACAATGAAGCTGCTGCAAGACTTGAAAGCATATACAAGCTTAGTCCTGCAACAACCACATTAGTCGAGGATGATGTTGAAGATGGCGGCTCTAAAGCCAAAGTTTCACGGAGGAGAAAAAGGAAAGAAAGTGGTGAGGAGAAGAAAGTGGTTGTGAGGAATAATGTGAAGAAGGAAAAACGTATGAGTCTTGATAAACGGATTGCTTTGAAGAGAAACGTTCAAGAGAAACCAGTCGTTGCTTCTGTTGATAAGAAAGTAACAAAGAGGCAGCAAGAAGAGGAGAAGATCGAGAGGCTTGTGCGGGACTATTCAGCTTCTAATGATATAGTGAGCTTGGACTGGAAAAAAATGAAGATACCTCCTGTTCTTTCTTCTACTGAACATGCTTGGTTGTTCAAGTTGATGCAACCTATGAAGGCTCTTCTTGAAGTGAAAGATGTATTGCAAAAGAGCTTGGGAAGAGAGCCTAGGGAAGCTGAAATAGCCGGGGAGATCAATATGACTGCGGGTGAAGTAAAAAAGAAAATCGAAATAGGTAGAGCTGCAAGAAACAAACTTATTAAGCACAATCTCCGGCTTGTCTTGTTTGTTATGAACAAATACTTTCATGAGTTTACCAACGGACCAAAATTCCAAGACCTTTGTCAAGCGGGTATGAGAGGGCTTATCACAGCAATTGACCGCTTTGAGCCGAAAAGGAAGTTTCGTCTTTCGACTTATGGTTTGTTTTGGATTAGACATGCCATCATACGGTCAATGACAACTTCAAACTTCACTCGTGTCCCATTTGGACTTGAATCGGTTAGAGTGGAGATATATAAAGCAAAGACTGAGCTATGGTTTGAGATGGGAAGACCTCCAACGGAGGACGAGGTAGTTGAGAGACTCAAGATAACACCTGAGAGATACCGTGAAGTATTGAGGGCTGCAAAACCGGTTTTGTCACTAAATTCAAAACATTCGGTTACTCAAGAAGAATTCATCAACGGAATCACAGATGTTGATGGTGTTGGAGCTAATAACAGCAGACAGCCTGCTCTTCTCAGGCTCGCTCTCGACGATGTGCTCGATTCATTGAAGCCGAAAGAGAGTCTGGTTATTCGACAGAGGTACGGTCTTGATGGAAAAGGCGACAGGACTCTAGGAGAGATAGCTGGAAATCTCAACATCTCTAGAGAAATGGTTAGGAAACATGAAGTCAAGGCCTTGATGAAGCTTAAGCATCAGGCCAGAGTTGATTACCTTCGTCAATACATCGTCTAAAACCAAACCGAACCGAACTGAGCCGCCTCACTCAACCATTTGTGCATACTTGGAACACTGAACCGGTGTGAAATTCAACCAATGTTGAGTCCGGTTAATTGAACTTTAAATTGCTTAAAACCGGTTAAGAGCGGGGCTAAAGATTCTTAAAAGAGTTGAACAGGAATGTTACACCGTTGATTCTCGCCTTCGTGAAGTCGATTACACGGCAACGACTTCGTTGCCCTTGTCTAATCATAAATTTTCTGCCGTATTCAAATAGATCATGATTGGTTTATATGTATCTATGGTTCTAATTAATATCCTCAAAGTTGAATTATCTTAGTCATGGTGAATACTGAAGAAAACCTATA
CDS Sequence
Protein Sequence