Information report for AT5G23880
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0006378 — involved in — mRNA polyadenylation
- GO:0005515 — enables — protein binding
- GO:0035194 — acts upstream of or within — regulatory ncRNA-mediated post-transcriptional gene silencing
- NONE — involved in — mRNA 3-end processing by stem-loop binding and cleavage GO:0006398 6009 P other metabolic processes IBA none PANTHER:PTN000128675|UniProtKB:Q9P2I0|FB:FBgn0027873 Communication:501741973 2023-06-07 AT5G23880 locus:2172843 AT5G23880 acts upstream of or within mRNA polyadenylation GO:0006378 6229 P nucleobase-containing compound metabolic process ISS Sequence similarity (homologue of/most closely related to) mammalian CPSF100 Publication:501683342|PMID:12602868 TAIR 2003-08-12 AT5G23880 gene:2172842 AT5G23880.1 located in nucleus GO:0005634 537 C nucleus ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI none UniProtKB:Q6NLV4 Publication:501719845|PMID:17008405 2023-05-23 AT5G23880 locus:2172843 AT5G23880 involved in mRNA polyadenylation GO:0006378 6229 P other metabolic processes IBA none PANTHER:PTN000128675|SGD:S000004105|FB:FBgn0027873 Communication:501741973 2023-01-14 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI none UniProtKB:Q6NLV4 Publication:501724763|PMID:18479511 2023-05-23 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI none UniProtKB:Q6NLV4 Publication:501730401|PMID:19439664 2023-05-23 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI yeast two-hybrid assay Tair:gene:2043559 Publication:501719773|PMID:16897494 quinnli 2007-08-02 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI none UniProtKB:O82312 Publication:501683342|PMID:12602868 2023-05-23 AT5G23880 locus:2172843 AT5G23880 located in cytoplasm GO:0005737 231 C cytoplasm IDA none Publication:501733590|PMID:19573236 2016-08-01 AT5G23880 locus:2172843 AT5G23880 part of mRNA cleavage and polyadenylation specificity factor complex GO:0005847 445 C nucleus NAS inferred by author from multiple lines of evidence NONE Publication:501719845|PMID:17008405 TAIR 2006-12-19 AT5G23880 locus:2172843 AT5G23880 part of mRNA cleavage and polyadenylation specificity factor complex GO:0005847 445 C nucleus ISS Sequence similarity (homologue of/most closely related to) mammalian CPSF100 Publication:501683342|PMID:12602868 TAIR 2003-08-12 AT5G23880 locus:2172843 AT5G23880 enables RNA binding GO:0003723 1217 F RNA binding IBA none PANTHER:PTN000128675|SGD:S000004105 Communication:501741973 2021-04-02 AT5G23880 locus:2172843 AT5G23880 enables protein binding GO:0005515 3877 F protein binding IPI none UniProtKB:Q8GUU3 Publication:501719773|PMID:16897494 2023-05-23 AT5G23880 locus:2172843 AT5G23880 acts upstream of or within embryo development ending in seed dormancy GO:0009793 11994 P reproduction NAS Database entries that dont cite a paper (e.g. SwissProt records)
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0003677 — enables — DNA binding
- GO:0005847 — part of — mRNA cleavage and polyadenylation specificity factor complex
- GO:0006378 — acts upstream of or within — mRNA polyadenylation
Functional Keywords
Literature and News
- AtCPSF73-II gene encoding an Arabidopsis homolog of CPSF 73 kDa subunit is critical for early embryo development. DOI: 10.1016/j.gene.2003.09.025 ; PMID: 14693369
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- An Arabidopsis Fip1 homolog interacts with RNA and provides conceptual links with a number of other polyadenylation factor subunits. DOI: 10.1074/jbc.M510964200 ; PMID: 16282318
- Defective RNA processing enhances RNA silencing and influences flowering of Arabidopsis. DOI: 10.1073/pnas.0606536103 ; PMID: 17008405
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Distinctive interactions of the Arabidopsis homolog of the 30 kD subunit of the cleavage and polyadenylation specificity factor (AtCPSF30) with other polyadenylation factor subunits. DOI: 10.1186/1471-2121-10-51 ; PMID: 19573236
- Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies. DOI: 10.1104/pp.109.142729 ; PMID: 19748916
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- Role of cleavage and polyadenylation specificity factor 100: anchoring poly(A) sites and modulating transcription termination. DOI: 10.1111/tpj.13611 ; PMID: 28621907
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- The 73 kD subunit of the cleavage and polyadenylation specificity factor (CPSF) complex affects reproductive development in Arabidopsis. DOI: 10.1007/s11103-006-0051-6 ; PMID: 16897494
- Unique features of plant cleavage and polyadenylation specificity factor revealed by proteomic studies. DOI: 10.1104/pp.109.142729 ; PMID: 19748916
Gene Resources
Sequences
cDNA Sequence
- >AT5G23880.1
TATGGACCGGGGAGGTTATTATTACAGAATTAAAAAACCCTCTTTCACGGTGGCTTCTTCTTCTTTAGTTCATCGGAGAAATTTTAGGGTTTATATCGGCGAACGGAAAAGATGGGTACTTCGGTGCAAGTGACTCCTCTCTGCGGAGTTTACAACGAGAATCCTCTCTCCTACTTAGTCTCCATTGATGGTTTCAACTTCCTCATCGACTGTGGTTGGAACGATCTCTTCGACACATCGCTCCTCGAACCTCTCTCCAGGGTTGCTTCTACTATAGATGCAGTTTTGCTTTCTCATCCAGATACACTTCACATTGGTGCTCTTCCTTATGCTATGAAGCAGCTTGGACTCTCCGCTCCTGTTTATGCTACTGAGCCTGTTCATAGATTAGGTCTCCTTACAATGTATGATCAGTTTTTGTCCAGGAAGCAAGTATCCGACTTTGATCTGTTTACACTGGATGACATAGATTCTGCTTTCCAGAATGTGATCAGATTGACTTACTCTCAAAATTACCATCTTTCTGGAAAGGGAGAGGGTATTGTAATTGCTCCTCATGTTGCTGGACACATGCTGGGAGGTAGCATCTGGAGGATAACAAAGGATGGGGAGGATGTTATATATGCTGTTGACTACAATCATCGGAAAGAAAGGCATTTGAATGGAACTGTTTTACAGTCTTTTGTTCGGCCTGCTGTTCTGATAACCGATGCATATCATGCTCTTTATACCAATCAAACCGCAAGACAGCAAAGGGACAAAGAATTTCTAGATACCATTTCAAAACATCTTGAAGTTGGAGGAAATGTTCTATTGCCAGTAGACACTGCGGGTCGTGTCCTGGAACTTCTCTTGATACTTGAACAGCATTGGTCACAAAGAGGTTTCAGCTTTCCCATTTATTTTCTCACGTACGTGTCATCTAGCACAATTGACTATGTTAAGAGTTTCCTCGAGTGGATGAGTGACTCCATTTCAAAGTCCTTTGAGACTTCACGTGATAATGCCTTTCTATTGAGGCATGTCACTCTGTTGATAAACAAGACTGATCTGGATAATGCTCCACCTGGTCCAAAGGTTGTTCTTGCTTCCATGGCTAGTCTCGAAGCCGGTTTTGCTCGAGAGATATTCGTGGAGTGGGCAAATGATCCCAGAAATTTAGTCCTCTTTACTGAAACAGGCCAGTTTGGCACTTTAGCTCGTATGCTTCAGTCAGCCCCACCTCCAAAATTTGTTAAAGTCACCATGTCTAAGAGGGTTCCTTTGGCTGGGGAAGAGTTAATTGCATATGAGGAAGAGCAAAACAGACTGAAAAGGGAAGAAGCTTTGCGAGCTAGCCTCGTTAAAGAGGAGGAAACAAAAGCTTCCCATGGATCCGATGATAATTCAAGTGAACCTATGATCATAGATACCAAGACTACTCACGATGTTATTGGTTCTCACGGGCCTGCATATAAAGATATATTGATTGATGGATTTGTTCCCCCATCCAGCAGCGTAGCTCCAATGTTCCCATATTATGATAACACATCTGAATGGGACGACTTTGGGGAGATTATTAATCCAGATGACTATGTGATCAAGGATGAAGACATGGACCGAGGAGCAATGCATAACGGAGGTGATGTGGACGGAAGGCTTGATGAGGCAACTGCTAGTCTCATGCTTGATACAAGACCTTCGAAAGTCATGTCCAATGAGCTCATTGTGACTGTTAGTTGTTCACTTGTTAAAATGGACTATGAAGGTCGGTCAGATGGCCGCTCAATCAAGTCAATGATTGCGCATGTTTCTCCTTTAAAACTTGTTTTGGTGCACGCGATAGCTGAGGCTACAGAGCATTTGAAGCAACACTGCTTGAACAACATCTGTCCACACGTGTATGCTCCTCAAATAGAGGAAACGGTCGATGTGACTTCTGATTTATGTGCTTACAAGGTCCAACTTTCTGAAAAGCTGATGAGCAATGTGATCTTCAAGAAGCTGGGAGATTCAGAAGTAGCTTGGGTGGATTCCGAAGTAGGGAAGACAGAGAGGGACATGAGGTCTCTACTACCGATGCCAGGTGCTGCTTCGCCACACAAACCTGTTCTAGTAGGTGATCTGAAAATCGCAGACTTCAAGCAGTTTCTGTCGAGCAAGGGTGTTCAGGTAGAATTTGCAGGTGGAGGAGCTTTACGTTGTGGTGAATATGTCACTCTACGAAAGGTTGGACCGACGGGTCAAAAGGGAGGAGCATCGGGTCCACAGCAAATTCTGATAGAAGGACCGTTGTGTGAAGACTATTACAAAATCAGGGATTATCTCTATTCTCAGTTCTACCTCCTCTGAGCATGATATAGAAAAAAAATGAAGCTTCTTCTCATTTTCTCAACATTTTTCAACCACTCAACATGTAATCTCGTATAGTTTATTGCCTTGCTTATAACCCTCAAATCTTATAGATTAATGTGTTAAAAATGGCAATAGCTTTTTGTAACTTTTTTGTACTTGTCATCTTAGTAGAAGCTTAAGTTGTCATTGGATATATTCCACTCCTATTTCGGTAAAGCGGTAAACTAAAACAGTAAAACGTGATAAACTCTCTTCTTTGTTCCTTGTATGTTCTCTCAAAAGTTTAAAATGAAAGCGAAAACACTTTCCATTCAA
CDS Sequence
Protein Sequence