Information report for AT5G23860
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- root , vascular leaf , flower , root , guard cell
Literature and News
- Two beta-tubulin genes, TUB1 and TUB8, of Arabidopsis exhibit largely nonoverlapping patterns of expression. DOI: 10.1023/a:1006047129410 ; PMID: 9678573
- The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes. DOI: 10.1105/tpc.4.5.549 ; PMID: 1498609
- Alteration of [beta]-Tubulin Gene Expression during Low-Temperature Exposure in Leaves of Arabidopsis thaliana. DOI: 10.1104/pp.103.2.371 ; PMID: 12231943
- P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA unction. DOI: 10.1016/s1534-5807(03)00025-x ; PMID: 12586064
- Arabidopsis microarrays identify conserved and differentially expressed genes involved in shoot growth and development from distantly related plant species. DOI: 10.1046/j.1365-313x.2003.01706.x ; PMID: 12662315
- Negative feedback regulation of Dicer-Like1 in Arabidopsis by microRNA-guided mRNA degradation. DOI: 10.1016/s0960-9822(03)00281-1 ; PMID: 12725739
- Transcriptional regulation of secondary growth in Arabidopsis thaliana. DOI: 10.1093/jxb/erg304 ; PMID: 14585825
- A CDC45 homolog in Arabidopsis is essential for meiosis, as shown by RNA interference-induced gene silencing. DOI: 10.1105/tpc.016865 ; PMID: 14660803
- Expression of KT/KUP genes in Arabidopsis and the role of root hairs in K+ uptake. DOI: 10.1104/pp.103.034660 ; PMID: 14988478
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Comparative proteome analysis of differentially expressed proteins induced by K+ deficiency in Arabidopsis thaliana. DOI: 10.1002/pmic.200400898 ; PMID: 15449379
- Apoplastic glycosidases active against xyloglucan oligosaccharides of Arabidopsis thaliana. DOI: 10.1093/pcp/pci223 ; PMID: 16267099
- AtATM3 is involved in heavy metal resistance in Arabidopsis. DOI: 10.1104/pp.105.074146 ; PMID: 16461380
- Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. DOI: 10.1038/sj.emboj.7601150 ; PMID: 16724114
- Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms. DOI: 10.1104/pp.106.082057 ; PMID: 16679420
- Desensitization of GSTF8 induction by a prior chemical treatment is long lasting and operates in a tissue-dependent manner. DOI: 10.1104/pp.106.079509 ; PMID: 16829588
- Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana. DOI: 10.1007/s11103-006-9087-x ; PMID: 17013749
- AtERF14, a member of the ERF family of transcription factors, plays a nonredundant role in plant defense. DOI: 10.1104/pp.106.086637 ; PMID: 17114278
- Phosphatidylinositol 4-kinase activation is an early response to salicylic acid in Arabidopsis suspension cells. DOI: 10.1104/pp.107.100842 ; PMID: 17496105
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
- GeneCAT–novel webtools that combine BLAST and co-expression analyses. DOI: 10.1093/nar/gkn292 ; PMID: 18480120
- Activated expression of an Arabidopsis HD-START protein confers drought tolerance with improved root system and reduced stomatal density. DOI: 10.1105/tpc.108.058263 ; PMID: 18451323
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Patatin-related phospholipase pPLAIIIβ-induced changes in lipid metabolism alter cellulose content and cell elongation in Arabidopsis. DOI: 10.1105/tpc.110.081240 ; PMID: 21447788
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Comparative proteomic analysis of NaCl stress-responsive proteins in Arabidopsis roots. DOI: 10.1093/jxb/erm207 ; PMID: 17916636
- General detoxification and stress responses are mediated by oxidized lipids through TGA transcription factors in Arabidopsis. DOI: 10.1105/tpc.107.054809 ; PMID: 18334669
Gene Resources
- UniProt: A0A178UKM5
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UKM5
- EnsemblPlants: AT5G23860.1, AT5G23860.2
- Gramene: AT5G23860.1, AT5G23860.2
- KEGG: ath:AT5G23860
- Orthologous matrix: WVPRSVN
- ExpressionAtlas: AT5G23860
- InterPro: IPR000217, IPR002453, IPR003008
- PANTHER: PTHR11588
- SUPFAM: SSF52490, SSF55307
- PROSITE: PS00227, PS00228
- Gene3D: 1.10.287.600, 3.30.1330.20, 3.40.50.1440
- OrthoDB: A0A178UKM5
- SWISS-MODEL: A0A178UKM5
- Conserved Domain Database: cd02187
Sequences
cDNA Sequence
- >AT5G23860.1
CACTTCGTCTTCTTCATTTCTTCACAAGTCATAACCGTTTCAAATTCTCTCTCTCTTTCTCTTTCTTTCTCAATTTTTGTAGTTTCATACTCTAGCTTACTAATCAAAGATGCGAGAGATTCTTCACATACAAGGTGGCCAATGCGGAAACCAGATCGGAGCTAAGTTCTGGGAAGTAGTTTGCGCCGAGCACGGGATCGATTCGACGGGAAGATACCAAGGAGAGAACGATTTGCAACTCGAACGAGTCAATGTCTACTACAACGAAGCGAGTTGCGGAAGATTCGTCCCACGCGCCGTCCTCATGGATCTAGAGCCTGGTACTATGGATAGTGTCAGATCCGGTCCGTACGGTCAGATCTTCCGTCCTGATAACTTCGTATTTGGTCAATCCGGTGCCGGTAACAATTGGGCTAAAGGACACTACACTGAAGGTGCTGAGCTTATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAATTGTGACTGCTTGCAAGGATTCCAAGTGTGTCACTCATTAGGAGGAGGAACTGGATCTGGAATGGGAACGTTGTTGATTTCAAAGATTAGGGAAGAGTATCCAGATAGGATGATGCTGACGTTTTCTGTATTCCCATCACCGAAAGTGTCAGACACTGTTGTTGAGCCTTATAATGCAACTCTCTCTGTTCATCAGCTTGTGGAGAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCTCTCTATGACATTTGCTTCAGAACTCTTAAGCTCACCACTCCAAGCTTTGGAGACTTGAATCACCTCATCTCTGCAACCATGAGTGGTGTCACTTGCTGCCTTCGTTTCCCGGGTCAGCTAAACTCTGACCTGCGCAAGCTTGCAGTGAATTTAATCCCATTCCCTCGTCTCCACTTCTTCATGGTTGGGTTTGCACCACTCACATCTCGTGGATCACAGCAATACAGAGCCTTAACCGTCCCTGAGCTCACTCAACAGATGTGGGATGCCAAGAATATGATGTGTGCAGCTGATCCACGCCACGGCAGGTACTTGACAGCCTCAGCCATGTTCAGAGGCAAAATGAGCACGAAAGAAGTTGACGAACAGATGATCAACGTTCAGAACAAGAACTCGTCATACTTTGTGGAATGGATCCCAAACAACGTGAAATCAACCGTGTGTGACATTCCACCAACAGGTCTGAAAATGGCTTCGACTTTCATCGGGAACTCGACATCGATCCAGGAGATGTTTAGGCGTGTGAGCGAACAGTTCACAGCGATGTTCAGAAGAAAAGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAATGATTTGGTATCAGAGTATCAACAGTACCAAGACGCAACGGCTGATGAGGAAGAAGGGTATGAGTATGAAGAAGACGAAGTGGAAGTGCAGGAGGAGCAATAACAACAGCTTCTCTGTTTCTCTTAATTCCTTTTTTTTTTTTCTCTTTTGTGTGAGTTTAGTGTCTTCTTATTCATTTTCTCTTCTGGTTTTGGTTTTCTTGTGTTGACATTTGGCTATGTGTGATGGTGCATTTATGTCTAAGGCTTAGGAAAATATATGTTTATAAGTCTTTTCGGGTGAGATTGGATTTGAGATATTGTTCGTTAGTTTTTTTTTCCCTAAACGTTGGTGATTCCATCTGTTTGCTATACCGTATTGTATTAATTACACCATTATGGCGTTTTTGCTGGCAGAAATTCTTATAATTCCTATTTGGATTCCCTCTCATATTTGAGGAGATCTTATGAGTTTGTTTTGTGTTTTGTTGCTGCTATGTTTAGTAAACACAAATATTTCTTGTGGCAGA - >AT5G23860.2
CACTTCGTCTTCTTCATTTCTTCACAAGTCATAACCGTTTCAAATTCTCTCTCTCTTTCTCTTTCTTTCTCAATTTTTGTAGTTTCATACTCTAGCTTACTAATCAAAGATGCGAGAGATTCTTCACATACAAGGTGGCCAATGCGGAAACCAGATCGGAGCTAAGTTCTGGGAAGTAGTTTGCGCCGAGCACGGGATCGATTCGACGGGAAGATACCAAGGAGAGAACGATTTGCAACTCGAACGAGTCAATGTCTACTACAACGAAGCGAGTTGCGGAAGATTCGTCCCACGCGCCGTCCTCATGGATCTAGAGCCTGGTACTATGGATAGTGTCAGATCCGGTCCGTACGGTCAGATCTTCCGTCCTGATAACTTCGTATTTGGTCAATCCGGTGCCGGTAACAATTGGGCTAAAGGACACTACACTGAAGGTGCTGAGCTTATCGATTCCGTTCTCGATGTTGTTCGTAAGGAAGCTGAGAATTGTGACTGCTTGCAAGGATTCCAAGTGTGTCACTCATTAGGAGGAGGAACTGGATCTGGAATGGGAACGTTGTTGATTTCAAAGATTAGGGAAGAGTATCCAGATAGGATGATGCTGACGTTTTCTGTATTCCCATCACCGAAAGTGTCAGACACTGTTGTTGAGCCTTATAATGCAACTCTCTCTGTTCATCAGCTTGTGGAGAATGCAGATGAGTGTATGGTTCTTGACAATGAAGCTCTCTATGACATTTGCTTCAGAACTCTTAAGCTCACCACTCCAAGCTTTGGAGACTTGAATCACCTCATCTCTGCAACCATGAGTGGTGTCACTTGCTGCCTTCGTTTCCCGGGTCAGCTAAACTCTGACCTGCGCAAGCTTGCAGTGAATTTAATCCCATTCCCTCGTCTCCACTTCTTCATGGTTGGGTTTGCACCACTCACATCTCGTGGATCACAGCAATACAGAGCCTTAACCGTCCCTGAGCTCACTCAACAGATGTGGGATGCCAAGAATATGATGTGTGCAGCTGATCCACGCCACGGCAGGTACTTGACAGCCTCAGCCATGTTCAGAGGCAAAATGAGCACGAAAGAAGTTGACGAACAGATGATCAACGTTCAGAACAAGAACTCGTCATACTTTGTGGAATGGATCCCAAACAACGTGAAATCAACCGTGTGTGACATTCCACCAACAGGTCTGAAAATGGCTTCGACTTTCATCGGGAACTCGACATCGATCCAGGAGATGTTTAGGCGTGTGAGCGAACAGTTCACAGCGATGTTCAGAAGAAAAGCTTTCTTGCATTGGTACACAGGTGAAGGAATGGACGAGATGGAGTTCACAGAGGCAGAGAGCAACATGAATGATTTGGTATCAGAGTATCAACAGTACCAAGACGCAACGGCTGATGAGGAAGAAGGGTATGAGTATGAAGAAGACGAAGTGGAAGTGCAGGAGGAGCAATAACAACAGCTTCTCTGTTTCTCTTAATTCCTTTTTTTTTTTTCTCTTTTGTGTGAGTTTAGTGTCTTCTTATTCATTTTCTCTTCTGGTTTTGGTTTTCTTGTGTTGACATTTGGCTATGTGTGATGGTGCATTTATGTCTAAGGCTTAGGAAAATATATGTTTATAAGTCTTTTCGGGTGAGATTGGATTTGAGATATTGTTCGTTAGTTTTTTTTTCCCTAAACGTTGGTGATTCCATCTGTTTGCTATACCGTATTGTATTAATTACACCATTATGGCGTTTTTGCTGGCAGAAATTCTTATAATTCCTATTTGGATTCCCTCTCATATTTGAGGAGATCTTATGAGTTTGTTTTGTGTTTTGTTGCTGCTATGTTTAGTAAACACAAATATTTCTTGTGGCAGA
CDS Sequence
Protein Sequence