Information report for AT5G23260
Gene Details
|
|
Functional Descriptions
- PO:0020024 — endothelium — endotelio (Spanish, exact), portion of endothelium (exact), 内皮（？） endothecium? (Japanese, exact)
- CS2105590 — yellow seeds
- CS2105591 — yellow seeds
- CS94069 — Small rosettes; slow growth; short internodes; short pedicels; short siliques; reduced fertility; somewhat short plants; average height = 20 cm.
- tt16 — Yellow seed coat
- tt16-6 — Altered seed pigmentation pattern due to a lack of proanthocyanidin (PA) accumulation in the endothelium. The inner cell layer of the inner integument showed an abnormal cell shape. The endothelial layer may be absent or the identity of this cell layer is changed.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes. DOI: 10.1046/j.1365-313x.2002.01416.x ; PMID: 12383089
- The TRANSPARENT TESTA16 locus encodes the ARABIDOPSIS BSISTER MADS domain protein and is required for proper development and pigmentation of the seed coat. DOI: 10.1105/tpc.004127 ; PMID: 12368498
- Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. DOI: 10.1105/tpc.011544 ; PMID: 12837945
- Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. DOI: 10.1105/tpc.105.031831 ; PMID: 15805477
- Mutant analysis, protein-protein interactions and subcellular localization of the Arabidopsis B sister (ABS) protein. DOI: 10.1007/s00438-005-0010-y ; PMID: 16080001
- The promoter of the Arabidopsis thaliana BAN gene is active in proanthocyanidin-accumulating cells of the Brassica napus seed coat. DOI: 10.1007/s00299-008-0667-x ; PMID: 19153740
- The Arabidopsis B-sister MADS-box protein, GORDITA, represses fruit growth and contributes to integument development. DOI: 10.1111/j.1365-313X.2010.04139.x ; PMID: 20088901
- Shaping up the fruit: control of fruit size by an Arabidopsis B-sister MADS-box gene. DOI: 10.4161/psb.5.7.12095 ; PMID: 20484990
- GORDITA (AGL63) is a young paralog of the Arabidopsis thaliana B(sister) MADS box gene ABS (TT16) that has undergone neofunctionalization. DOI: 10.1111/j.1365-313X.2010.04290.x ; PMID: 20598091
- Using biologically interrelated experiments to identify pathway genes in Arabidopsis. DOI: 10.1093/bioinformatics/bts038 ; PMID: 22271267
- Predicting the impact of alternative splicing on plant MADS domain protein function. DOI: 10.1371/journal.pone.0030524 ; PMID: 22295091
- Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. DOI: 10.1105/tpc.16.00041 ; PMID: 27233529
- The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0165075 ; PMID: 27776173
- TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa. DOI: 10.1093/jxb/erx151 ; PMID: 28830101
- Developmental patterning of sub-epidermal cells in the outer integument of Arabidopsis seeds. DOI: 10.1371/journal.pone.0188148 ; PMID: 29141031
- Insights into the role of transcription factors controlling mucilage production in the Arabidopsis seed coat. DOI: 10.1016/j.plantsci.2018.04.021 ; PMID: 29807590
- Maternal control of triploid seed development by the TRANSPARENT TESTA 8 (TT8) transcription factor in Arabidopsis thaliana. DOI: 10.1038/s41598-023-28252-5 ; PMID: 36693864
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive interaction map of the Arabidopsis MADS Box transcription factors. DOI: 10.1105/tpc.105.031831 ; PMID: 15805477
Gene Resources
- UniProt: F4KCU5
- EMBL: CP002688
- AlphaFoldDB: F4KCU5
- EnsemblPlants: AT5G23260.3
- Gramene: AT5G23260.3
- ExpressionAtlas: AT5G23260
- InterPro: IPR002100, IPR002487, IPR033896
Sequences
cDNA Sequence
- >AT5G23260.3
ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGACAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCTATGGAAACCTTGTTTAAAGCACAATGCACTTGAGTTCTTGGTTATATAATTAATCATCATTATTAC - >AT5G23260.1
ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGACAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCTATGGAAACCTTGTTTAAAGCACAATGCACTTGAGTTCTTGGTTATATAATTAATCATCATTATTAC - >AT5G23260.4
ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGACAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCTATGGAAACCTTGTTTAAAGCACAATGCACTTGAGTTCTTGGTTATATAATTAATCATCATTATTAC - >AT5G23260.2
ATGGGTAGAGGGAAGATAGAGATAAAGAAGATAGAGAATCAGACGGCGAGGCAAGTGACCTTCTCCAAGAGAAGAACTGGTCTTATAAAGAAGACTCGTGAGCTCTCTATTCTCTGTGACGCTCACATCGGTCTCATCGTCTTCTCAGCCACCGGAAAGCTTTCCGAGTTCTGCTCCGAACAGAACAGGATGCCTCAACTCATTGACCGATACTTGCATACCAACGGATTGCGACTTCCTGATCATCATGACGACCAGGAGCAATTGCACCATGAGATGGAACTACTAAGAAGAGAGACATGTAACCTTGAGCTTCGTCTGCGTCCATTCCATGGACATGACTTAGCCTCCATTCCTCCTAATGAGCTTGACGGACTCGAGAGACAGCTAGAACATTCTGTCCTCAAAGTCCGTGAGCGTAAGAGGAGGATGCTAGAAGAAGATAACAACAACATGTACCGTTGGCTTCATGAGCATCGTGCAGCGATGGAGTTTCAACAAGCTGGGATAGATACCAAACCAGGGGAGTATCAACAGTTTATAGAGCAGCTTCAGTGCTATAAACCAGGGGAGTATCAGCAGTTTCTAGAGCAGCAGCAACAACAACCAAACAGCGTTCTTCAGCTTGCTACACTTCCTTCTGAGATTGATCCTACTTACAATCTCCAGCTTGCTCAGCCTAATCTTCAAAACGATCCAACGGCCCAGAATGATTAATACAATTCTCAATAGATATCTACTCTTTCTTTATGGAGACAGATTCATGAACTTTTATTACCTATATTTTGATAAGCCAGTGTCTTCTTTTGTGTGGCTATGGAAACCTTGTTTAAAGCACAATGCACTTGAGTTCTTGGTTATATAATTAATCATCATTATTAC
CDS Sequence
Protein Sequence