Information report for AT5G23120
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- hcf136 — Seedling lethal, devoid of photosystem II activity
Functional Keywords
Literature and News
- Proteome map of the chloroplast lumen of Arabidopsis thaliana. DOI: 10.1074/jbc.M108575200 ; PMID: 11719511
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Chloroplast research in the genomic age. DOI: 10.1016/s0168-9525(02)00003-3 ; PMID: 12493248
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- The chloroplast lumen and stromal proteomes of Arabidopsis thaliana show and long-term exposure to low temperature. DOI: 10.1111/j.1365-313X.2006.02821.x ; PMID: 16923014
- Oviposition by pierid butterflies triggers defense responses in Arabidopsis. DOI: 10.1104/pp.106.090837 ; PMID: 17142483
- An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana. DOI: 10.1186/1471-2229-8-47 ; PMID: 18433503
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- A proteomic analysis of Arabidopsis thaliana seedling responses to 3-oxo-octanoyl-homoserine lactone, a bacterial quorum-sensing signal. DOI: 10.1016/j.bbrc.2012.09.044 ; PMID: 22995300
- A proteomics approach identifies novel proteins involved in gravitropic signal transduction. DOI: 10.3732/ajb.1200339 ; PMID: 23281391
- Proteome and metabolome profiling of cytokinin action in Arabidopsis identifying and up-regulation. DOI: 10.1093/jxb/ert227 ; PMID: 24064926
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Identification and Roles of Photosystem II Assembly, Stability, and Repair Factors in Arabidopsis. DOI: 10.3389/fpls.2016.00168 ; PMID: 26909098
- Functional Update of the Auxiliary Proteins PsbW, PsbY, HCF136, PsbN, TerC and ALB3 in Maintenance and Assembly of PSII. DOI: 10.3389/fpls.2016.00423 ; PMID: 27092151
- Stable Accumulation of Photosystem II Requires ONE-HELIX PROTEIN1 (OHP1) of the Light Harvesting-Like Family. DOI: 10.1104/pp.17.01782 ; PMID: 29438089
- Exploring the Link between Photosystem II Assembly and Translation of the Chloroplast psbA mRNA. DOI: 10.3390/plants9020152 ; PMID: 31991763
- Light Signaling-Dependent Regulation of PSII Biogenesis and Functional Maintenance. DOI: 10.1104/pp.20.00200 ; PMID: 32439719
- Characterization of the Free and Membrane-Associated Fractions of the Thylakoid Lumen Proteome in Arabidopsis thaliana. DOI: 10.3390/ijms22158126 ; PMID: 34360890
- Proteome map of the chloroplast lumen of Arabidopsis thaliana. DOI: 10.1074/jbc.M108575200 ; PMID: 11719511
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- The early responses of Arabidopsis thaliana cells to cadmium exposure explored by protein and metabolite profiling analyses. DOI: 10.1002/pmic.200500543 ; PMID: 16502469
- High light response of the thylakoid proteome in arabidopsis wild type and the ascorbate-deficient mutant vtc2-2. A comparative proteomics study. DOI: 10.1104/pp.106.080150 ; PMID: 16648217
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A654G449
- EMBL: CACRSJ010000110
- AlphaFoldDB: A0A654G449
- EnsemblPlants: AT5G23120.1
- Gramene: AT5G23120.1
- KEGG: ath:AT5G23120
- ExpressionAtlas: AT5G23120
- InterPro: IPR015943, IPR016705, IPR028203
- PANTHER: PTHR47199, PTHR47199:SF2
- SUPFAM: SSF110296
- Gene3D: 2.130.10.10
- SWISS-MODEL: A0A654G449
Sequences
cDNA Sequence
- >AT5G23120.1
GAGGCGGGAGAGAGAAAGAGAAGAGAGTGAGAGAGATCGAAGAACATTTACACACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTGTTTCTCCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCTCATCTTCTCCTCCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTCGGCGGGAGCTTCTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTTCCATTGTTGGACCAGCGAGAGCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTTCTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTGGAACGAGACAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGATTCCTTCAGCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAAGAAGGATGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGAATTGGGATAGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGAAGATAAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAGGGGATATAACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAGTATCCAGTGGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTTCACCTGATGGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAGCCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGTACTGGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGATGTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATACTACTGAGAACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAACCTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACGATGGAGTCTTGCTCCGATATGTTGGCTGAAGAATTTAAAAATAAAAAAGAGGTTAAATTGAAATGGTTATGTTTCAATCCTTCTCTGTAAAGCCTTTAACTGCGTTTTAATACTACATTACACTATTGTATACATTCCCTTCACAAAATATATATAATTTTGTGTTTCTTCTGAAAAGCTTTGTTTCTCACTGTTAGTTGGAGTTGGATTTGATCTCATCTATGTATGTTTATAACCTATTTTCAGCCAAGAAATTTCATTGTGTAGGCAACCAAGAAAGATGACAAGAAATCTTCGCCAG - >AT5G23120.2
GAGGCGGGAGAGAGAAAGAGAAGAGAGTGAGAGAGATCGAAGAACATTTACACACATCAATGGCGTCTCTGCAACTCTGCGACGGTTATCTTCTCTTCAAGCCCTCTGTTTCTCCTCGATTCCTCTCTCAACGCATTTCTCATCGCCTAATCCCTAAAGCCTCATCTTCTCCTCCTCCATCTCCATCACCATCATCGTCCTCTTCATCCTTATCTTTCAGTCGGCGGGAGCTTCTGTACCAATCGGCAGCTGTATCACTCTCGCTTTCTTCCATTGTTGGACCAGCGAGAGCTGATGAACAGTTATCCGAATGGGAAAGAGTGTTTCTCCCAATCGATCCCGGTGTTGTTCTTCTCGACATTGCTTTCGTCCCCGACGAACCTAGCCGAGGGTTTTTACTTGGAACGAGACAGACTTTGTTAGAGACTAAAGATGGTGGAAGCACTTGGAATCCACGTTCGATTCCTTCAGCTGAAGAAGAAGATTTCAATTATAGATTCAATTCGATTAGCTTTAAAGGCAAAGAAGGATGGATTATTGGCAAACCTGCGATTTTATTGTACACTGCTGATGCTGGAGAGAATTGGGATAGGATTCCTCTAAGTTCTCAGCTTCCTGGAGATATGGTGTTTATAAAAGCGACAGAAGATAAGAGTGCAGAGATGGTTACTGATGAAGGTGCTATTTATGTTACTTCAAACAGGGGATATAACTGGAAAGCTGCTATTCAGGAAACTGTTTCAGCTACCTTGAACAGAACAGTATCCAGTGGAATCAGTGGTGCTAGTTACTACACGGGAACTTTCAGTGCTGTTAATCGTTCACCTGATGGAAGATATGTCGCTGTTTCGAGCCGTGGTAACTTCTTTCTGACATGGGAGCCTGGGCAGCCTTACTGGCAACCACACAATAGAGCTGTTGCTAGAAGAATTCAGAACATGGGATGGAGAGCTGATGGTGGTCTTTGGCTTCTTGTTCGTGGTGGAGGACTTTATCTTAGCAAAGGTACTGGGATTACAGAGGAGTTTGAAGAAGTTCCAGTACAAAGCCGTGGCTTTGGCATTCTAGATGTTGGATATCGCTCAGAGGAAGAAGCATGGGCAGCAGGAGGCAGTGGCATACTACTGAGAACAAGAAATGGAGGCAAATCATGGAACCGTGACAAAGCTGCTGATAATATCGCAGCTAACCTATACGCAGTCAAATTTGTGGATGACAAGAAAGGATTTGTGCTTGGCAACGATGGAGTCTTGCTCCGATATGTTGGCTGAAGAATTTAAAAATAAAAAAGAGGTTAAATTGAAATGGTTATGTTTCAATCCTTCTCTGTAAAGCCTTTAACTGCGTTTTAATACTACATTACACTATTGTATACATTCCCTTCACAAAATATATATAATTTTGTGTTTCTTCTGAAAAGCTTTGTTTCTCACTGTTAGTTGGAGTTGGATTTGATCTCATCTATGTATGTTTATAACCTATTTTCAGCCAAGAAATTTCATTGTGTAGGCAACCAAGAAAGATGACAAGAAATCTTCGCCAG
CDS Sequence
Protein Sequence