Gene Details:
- Gene ID: AT5G22250
- Gene Symbol: AtCAF1b, CAF1b
- Gene Name: CCR4- associated factor 1b, CCR4- associated factor 1b
- Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Function-related keywords:
Literature:
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Phylogenetic profiling of the Arabidopsis thaliana proteome: what proteins distinguish plants from other organisms? DOI: 10.1186/gb-2004-5-8-r53 ; PMID: 15287975
- Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. DOI: 10.1186/gb-2007-8-4-r49 ; PMID: 17408486
- Identification and characterization of COI1-dependent transcription factor genes involved in JA-mediated response to wounding in Arabidopsis plants. DOI: 10.1007/s00299-007-0410-z ; PMID: 17786451
- Arabidopsis transcriptome reveals control circuits regulating redox homeostasis and the role of an AP2 transcription factor. DOI: 10.1104/pp.108.128488 ; PMID: 18829981
- The Arabidopsis homologs of CCR4-associated factor 1 show mRNA deadenylation activity and play a role in plant defence responses. DOI: 10.1038/cr.2008.317 ; PMID: 19065152
- Arabidopsis deadenylases AtCAF1a and AtCAF1b play overlapping and distinct roles in mediating environmental stress responses. DOI: 10.1104/pp.109.149005 ; PMID: 19955262
- Identification of Arabidopsis CCR4-NOT Complexes with Pumilio RNA-Binding Proteins, APUM5 and APUM2. DOI: 10.1093/pcp/pcz089 ; PMID: 31093672
Sequences:
cDNA Sequence
- >AT5G22250.1
TGGTCGTAAGTCGTAACGTTTACATGTTTTATTCAACTCTTAAAAACCAATAGAAAATCTTAATGTACTTGGCCTTCTTATTCTTGTCGGCTTAATGTACTTACTTAAATACAACGACTTGAATTGCAATAATTCGATACACGAAGGAGAAGCCAACTTAGACTAAGTCAAGAAACACATTGAATCATAAACGTGCGCGTTTCTCACACTTCTTCTCCTCTCCTTCCTCGTAAACACTCTCTTACTCACATTCATATATATAACTAAACCTTGCAGATTAACCAAATCAACAAAAAAAAACAGACTTTTGATAAATTCACAACGAAGAAGAAGACCTAAAAGATCGGGACTTGAAACTATGATCAAATCAGAAGCAGATCTCTCCGATGTGATCGTGATTCGTGACGTTTGGGCTTATAATCTCGAGTCAGAGTTTGACCTAATCAGAGGAATCGTCGAAGATTACCCATTCATCTCAATGGATACAGAATTTCCCGGCGTGATTTACAAGGCGGATCTCGACGTTCTCCGCCGTGGAAACCCTAATTATCTCTACAATCTTCTCAAATCCAACGTTGACGCTTTAAGTTTGATCCAAGTCGGTCTTACTCTCTCCGACGCCGACGGAAACCTCCCAGATCTCGGCGGTCAAAAAAACCGTCGATACATCTGGGAATTCAATTTCCGTGACTTCGACGTGGAGCGTGATCCACACGCTCCTGATTCGATCGAGCTACTCCGTCGTCACGGGATCGATTTCGAGCGGAACCGTCGCGAAGGTGTTGAATCGGAGAGGTTCGCGGAGCTGATGATGTCATCGGGGTTGATCTGTAACGAGTCTGTGAGCTGGGTGACGTTTCACAGCGCGTATGATTTTGGTTACCTTGTGAAGATTCTCACGCGCCGGCAGCTTCCGGTGGCGTTGCGTGAGTTTTTAGGGTTGCTTAGAGCTTTCTTCGGTGATAGGGTTTATGATGTGAAACATATTATGAGGTTTTGTGAGCAGAGATTGTATGGTGGTTTGGACCGGGTTGCTCGGTCTCTTGAAGTTAACCGGGCGGTTGGGAAATGTCATCAAGCCGGTTCGGATAGTTTGCTGACGTGGCAGGCGTTTCAGAGGATGAGGGATTTGTATTTCGTTGAGGATGGGGCGGAGAAACACGCCGGAGTTTTGTATGGTTTAGAGGTTTTTTGAGGGATTTATAATTAATTAATTTAATTAATCTTTGTTAATCATTTATACAGTCGAAATCGAAATTATCTTATTCATCTCTCGTTTTAACCAAATCCAAAAACCAAAACGAAATAACTCAATTTGGTTTT
CDS Sequence
Protein Sequence