Information report for AT5G22220
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000016 — lateral root primordium — portion of lateral root primordium tissue (exact), primordio de raíz lateral (Spanish, exact), 側根原基 (Japanese, exact)
- PO:0000017 — vascular leaf primordium — leaf primordium (exact), portion of vascular leaf primordium tissue (exact), primordio de hoja (Spanish, exact), vascular leaf primordia (exact, plural), 葉原基 (Japanese, exact)
- PO:0000035 — cotyledon vascular system — sistema vascular del cotiledón (Spanish, exact), 子葉維管系 (Japanese, exact)
- PO:0000230 — inflorescence meristem — meristema de la inflorescencia (Spanish, exact), 花序分裂組織 (Japanese, exact)
- PO:0000232 — axillary bud meristem — meristema de yema axilar (Spanish, exact), 腋芽分裂組織 (Japanese, exact), axillary meristem (related)
- PO:0006504 — leaf trichome — tricoma de hoja (Spanish, exact), 葉毛（毛茸、糸状体） (Japanese, exact), phyllid trichome (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009032 — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0009062 — gynoecium — ginoecio (Spanish, exact), gynaecium (exact), gynoecia (exact, plural), 雌蕊群 (Japanese, exact), Poaceae gynoecium (narrow), Zea gynoecium (narrow), apocarpous gynoecium (narrow), gynoecium of ear floret (narrow), gynoecium of lower floret of pedicellate spikelet of ear (narrow), gynoecium of lower floret of pedicellate spikelet of tassel (narrow), gynoecium of lower floret of sessile spikelet of ear (narrow), gynoecium of lower floret of sessile spikelet of tassel (narrow), gynoecium of tassel floret (narrow), gynoecium of upper floret of pedicellate spikelet of ear (narrow), gynoecium of upper floret of pedicellate spikelet of tassel (narrow), gynoecium of upper floret of sessile spikelet of ear (narrow), gynoecium of upper floret of sessile spikelet of tassel (narrow), syncarpous gynoecium (narrow), pistil (broad)
- PO:0009066 — anther — antera (Spanish, exact), 半葯,花粉のう (Japanese, exact), Poaceae anther (narrow), Zea anther (narrow)
- PO:0009072 — plant ovary — ovario vegetal (Spanish, exact), 子房 (Japanese, exact), Poaceae ovary (narrow), Zea ovary (narrow)
- PO:0009073 — stigma — estigma (Spanish, exact), stigmas (exact, plural), stigmata (exact, plural), 柱頭 (Japanese, exact), Poaceae stigma (narrow), Zea stigma (narrow)
- PO:0009074 — style — estilo (Spanish, exact), 花柱 (Japanese, exact), Poaceae style (narrow)
- PO:0020148 — shoot apical meristem — SAM (exact), meristema apical del epiblasto (epiblastema) (Spanish, exact), 茎頂分裂組織 (Japanese, exact), primary shoot meristem (related), promeristem (broad)
- PO:0025257 — primary root elongation zone — zona de elongación de la raíz primaria (Spanish, exact), 一次根伸長帯（層） (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
- root , lateral root primordium , vascular leaf primordium , cotyledon vascular system , inflorescence meristem , axillary bud meristem , leaf trichome , sepal , petal , inflorescence flower pedicel , gynoecium , anther , plant ovary , stigma , style , shoot apical meristem , primary root elongation zone , pollen , plant sperm cell
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Characterization of two distinct DP-related genes from Arabidopsis thaliana. DOI: 10.1016/s0014-5793(00)02238-9 ; PMID: 11108847
- Arabidopsis E2F1 binds a sequence present in the promoter of S-phase-regulated gene AtCDC6 and is a member of a multigene family with differential activities. DOI: 10.1023/a:1011848528377 ; PMID: 11669580
- The E2F family of transcription factors from Arabidopsis thaliana. Novel and conserved components of the retinoblastoma/E2F pathway in plants. DOI: 10.1074/jbc.M110616200 ; PMID: 11786543
- Two E2F elements regulate the proliferating cell nuclear antigen promoter differently during leaf development. DOI: 10.1105/tpc.006403 ; PMID: 12468739
- The role of the Arabidopsis E2FB transcription factor in regulating auxin-dependent cell division. DOI: 10.1105/tpc.105.033761 ; PMID: 16055635
- Interplay between Arabidopsis activating factors E2Fb and E2Fa in cell cycle progression and development. DOI: 10.1104/pp.106.077990 ; PMID: 16514015
- Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis. DOI: 10.1105/tpc.107.057075 ; PMID: 18424613
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis. DOI: 10.1007/s11103-009-9577-8 ; PMID: 19937368
- Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. DOI: 10.1038/msb.2010.53 ; PMID: 20706207
- The E2F transcription factor family regulates CENH3 expression in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2011.04715.x ; PMID: 21771121
- Both negative and positive G1 cell cycle regulators undergo proteasome-dependent degradation during sucrose starvation in Arabidopsis. DOI: 10.4161/psb.6.9.16877 ; PMID: 22019639
- Light-dependent regulation of DEL1 is determined by the antagonistic action of E2Fb and E2Fc. DOI: 10.1104/pp.111.183384 ; PMID: 21908689
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- Transcriptional repression by MYB3R proteins regulates plant organ growth. DOI: 10.15252/embj.201490899 ; PMID: 26069325
- The Canonical E2Fs Are Required for Germline Development in Arabidopsis. DOI: 10.3389/fpls.2018.00638 ; PMID: 29868091
- γ-Tubulin interacts with E2F transcription factors to regulate proliferation and endocycling in Arabidopsis. DOI: 10.1093/jxb/erz498 ; PMID: 31693141
- DREAM complex suppresses DNA methylation maintenance genes and precludes DNA hypermethylation. DOI: 10.1038/s41477-020-0710-7 ; PMID: 32661276
- The DREAM complex represses growth in response to DNA damage in Arabidopsis. DOI: 10.26508/lsa.202101141 ; PMID: 34583930
- E2Fb and E2Fa transcription factors independently regulate the DNA damage response after ultraviolet B exposure in Arabidopsis. DOI: 10.1111/tpj.15616 ; PMID: 34859915
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. DOI: 10.1111/j.1365-313X.2004.02319.x ; PMID: 15686519
- Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. DOI: 10.1111/j.1365-313X.2004.02319.x ; PMID: 15686519
Gene Resources
- UniProt: A0A178ULG8
- EMBL: CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178ULG8
- EnsemblPlants: AT5G22220.2
- Gramene: AT5G22220.2
- KEGG: ath:AT5G22220
- Orthologous matrix: RIQWKGQ
- ExpressionAtlas: AT5G22220
- InterPro: IPR003316, IPR015633, IPR032198
- PANTHER: PTHR12081, PTHR12081:SF109
- SUPFAM: SSF144074, SSF46785
- Gene3D: 1.10.10.10, 6.10.250.540
- OrthoDB: A0A178ULG8
- SWISS-MODEL: A0A178ULG8
- Conserved Domain Database: cd14660
Sequences
cDNA Sequence
- >AT5G22220.2
ATAATCCTTCCTCTTCTTCATCTTCTTCTCCTCTCCCGCTTTTTTTCGATTCGCCGATCTCTTCACATTCTCTTCCCGGAATCTCCGTAATTCCCGCCGTAGATCTGCTTCTTAATCGTTATTGGGATCTCTGCTTACCGGAGATCCGAGTTTCCGTGACAATTTTCGCCGTTTCTTTTTTTTTTTGGGGGATTTTTTATCGAGATTCGTTCTTATGTCTGAAGAAGTACCTCAACAATTCCCATCTTCTAAGCGGCAGCTTCATCCTTCTCTTTCTTCTATGAAGCCTCCTCTAGTTGCTCCTGGTGAGTATCACCGGTTTGATGCGGCGGAGACTCGCGGTGGTGGAGCTGTTGCTGATCAGGTTGTCTCTGACGCGATTGTGATCAAATCTACTCTGAAGCGTAAGACAGATTTGGTAAACCAAATAGTTGAGGTCAATGAATTGAATACCGGTGTTCTTCAAACACCTGTATCAGGGAAAGGGGGGAAAGCCAAGAAAACTTCTAGGTCTGCGAAGTCTAATAAGTCTGGAACGCTAGCTTCTGGCTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGTACTTGTCGATATGATAGTTCGTTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTATTCTTGATCTAAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGAAGGATATATGATATAACCAATGTGTTAGAAGGAATAGGTTTGATAGAGAAGACGCTTAAGAACAGGATTCAGTGGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAGCATAGCTAACCTACAGGATGAAGTACAAAACCTCGCAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCACAAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTACTGTTCGTCACTGAAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGGTACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCGAAGAGAGCTTTGAGGACATTCCTCAGGCTGATGAACCTTCAAATGTTCCTGATGAACCCTCTAATGTCCCTGATGTACCTTCAAATCTTCCATCAACATCTGGTCTCCCTGAGAACCATGATGTATCTATGCCGATGAAAGAGGAAAGCACCGAAAGAAACATGGAAACACAGGAAGTTGATGATACGCAAAGAGTTTACTCTGACATCGAATCTCATGACTTTGTCGATGGTATCATGAAGATTGTTCCTCCAGATTTGGATATGGGTGTAGATTACTGGTTTCGATCAGAGGTAGGCGAAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCAGACTGGAACCAGATGATTACATTTGATCAAGACCACGCTGGACCGAGCGACAACAAAATCTTGGAGCAGCCACAAACTCCATCGAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTTACCATACCACATTACAAGCACCACCATATATCTGTACATAGAATCTGATTTCGGTGAAACCAGAGTTAATGTTGTACTTGTACAGTAGCTGCATTGCATTATCATAGAATAGAGATTGCAAAATAAAAGTAGAGAAACCAACCCCTTCGTTGTATTCTTCATTTTTTTTCTTTGTTAGCTTCTCAGGCTTAATATAGAATTAGCCTTAGCCCATTGATTTCTTAATATTGGTCTTGTTCATGTGAAACTGCAAAACCTTTTAGAGTTGTAGACGGGTGCTTAGTAGTTTTACATGCTCCATTTCCGGTTTACCAAAAAGGTAACCAGATCGAAACTAAAACATATTTCCGTTCATCAAAAATCTTGACGAAAACATATTGG - >AT5G22220.3
ATAATCCTTCCTCTTCTTCATCTTCTTCTCCTCTCCCGCTTTTTTTCGATTCGCCGATCTCTTCACATTCTCTTCCCGGAATCTCCGTAATTCCCGCCGTAGATCTGCTTCTTAATCGTTATTGGGATCTCTGCTTACCGGAGATCCGAGTTTCCGTGACAATTTTCGCCGTTTCTTTTTTTTTTTGGGGGATTTTTTATCGAGATTCGTTCTTATGTCTGAAGAAGTACCTCAACAATTCCCATCTTCTAAGCGGCAGCTTCATCCTTCTCTTTCTTCTATGAAGCCTCCTCTAGTTGCTCCTGGTGAGTATCACCGGTTTGATGCGGCGGAGACTCGCGGTGGTGGAGCTGTTGCTGATCAGGTTGTCTCTGACGCGATTGTGATCAAATCTACTCTGAAGCGTAAGACAGATTTGGTAAACCAAATAGTTGAGGTCAATGAATTGAATACCGGTGTTCTTCAAACACCTGTATCAGGGAAAGGGGGGAAAGCCAAGAAAACTTCTAGGTCTGCGAAGTCTAATAAGTCTGGAACGCTAGCTTCTGGCTCTAATGCAGGTTCTCCTGGAAATAACTTTGCACAGGCCGGTACTTGTCGATATGATAGTTCGTTAGGTCTTTTGACAAAGAAATTTATCAATTTGATAAAACAAGCAGAGGATGGTATTCTTGATCTAAACAAAGCAGCTGATACTTTAGAGGTACAAAAGAGAAGGATATATGATATAACCAATGTGTTAGAAGGAATAGGTTTGATAGAGAAGACGCTTAAGAACAGGATTCAGTGGAAGGGTCTCGATGTCTCAAAACCAGGAGAAACAATCGAAAGCATAGCTAACCTACAGGATGAAGTACAAAACCTCGCAGCTGAGGAGGCAAGATTAGATGACCAAATCAGAGAATCACAAGAAAGATTAACAAGCTTGAGTGAGGATGAAAACAACAAAAGGTTACTGTTCGTCACTGAAAACGACATTAAGAACCTACCATGCTTCCAGAATAAGACGCTGATAGCTGTAAAGGCACCGCATGGAACAACTCTTGAGGTTCCAGATCCTGATGAGGCTGGTGGTTATCAGAGGAGGTACAGAATCATTCTGAGAAGCACAATGGGACCAATAGACGTGTACCTAGTCAGTCAATTCGAAGAGAGCTTTGAGGACATTCCTCAGGCTGATGAACCTTCAAATGTTCCTGATGAACCCTCTAATGTCCCTGATGTACCTTCAAATCTTCCATCAACATCTGGTCTCCCTGAGAACCATGATGTATCTATGCCGATGAAAGAGGAAAGCACCGAAAGAAACATGGAAACACAGGAAGTTGATGATACGCAAAGAGTTTACTCTGACATCGAATCTCATGACTTTGTCGATGGTATCATGAAGATTGTTCCTCCAGATTTGGATATGGGTGTAGATTACTGGTTTCGATCAGAGGTAGGCGAAGTCAGCATCACAGACATGTGGCCAGATGAATCTGGACCAGACTGGAACCAGATGATTACATTTGATCAAGACCACGCTGGACCGAGCGACAACAAAATCTTGGAGCAGCCACAAACTCCATCGAGCCCAACACCAGAAGAATCCACTGCTACGAGATCACCTACAGGTAGCTGAAGTTACCATACCACATTACAAGCACCACCATATATCTGTACATAGAATCTGATTTCGGTGAAACCAGAGTTAATGTTGTACTTGTACAGTAGCTGCATTGCATTATCATAGAATAGAGATTGCAAAATAAAAGTAGAGAAACCAACCCCTTCGTTGTATTCTTCATTTTTTTTCTTTGTTAGCTTCTCAGGCTTAATATAGAATTAGCCTTAGCCCATTGATTTCTTAATATTGGTCTTGTTCATGTGAAACTGCAAAACCTTTTAGAGTTGTAGACGGGTGCTTAGTAGTTTTACATGCTCCATTTCCGGTTTACCAAAAAGGTAACCAGATCGAAACTAAAACATATTTCCGTTCATCAAAAATCTTGACGAAAACATATTGG
CDS Sequence
Protein Sequence