Information report for AT5G20420
Gene Details
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Functional Descriptions
- clsy1-7 clsy2-2 — synergistic relationship resulting in stronger reductions in 24nt-siRNA levels, effects on differentially methylated regions where methylation level reductions were observed in non-CG contexts in a genotype-specific manner.
- clsy1-7 clsy2-2 clsy3-1 clsy4-1 — greater than 98% of all pol-iv-dependent 24nt-siRNA clusters were reduced, effects on differentially methylated regions where methylation level reductions were observed in non-CG contexts in a genotype-specific manner.
Functional Keywords
Literature and News
- Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation. DOI: 10.1016/j.cub.2004.04.037 ; PMID: 15120073
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis. DOI: 10.1105/tpc.107.051540 ; PMID: 17526749
- Locus-specific control of the de novo DNA methylation pathway in Arabidopsis by the CLASSY family. DOI: 10.1038/s41588-018-0115-y ; PMID: 29736015
- The CLASSY family controls tissue-specific DNA methylation patterns in Arabidopsis. DOI: 10.1038/s41467-021-27690-x ; PMID: 35017514
Gene Resources
Sequences
cDNA Sequence
- >AT5G20420.1
TTTTCCTCTTGTCCGGTTCGTTTGCCAACACTCCCTTTCTCACTCACTCACTCTTTTTTGTTTGTTGTATACAACAAAATTCATGCAAATCTTTATTAAGTAATTTATATTCACAGTGGCCAACAAGATTCTGAAATAACTACTGAGGAGGATCTTCGCATAACAATGTTGTTGGTTGATTGGCCCAAAAGTTATAAAAAAATATGAAGAAAAGAGGTTTCTACAATTTGAAGCATCCATTTGATCCATGTCCTTTCGAGTTCTTCTGCTCGGGTACATGGAAGCCTGTGGAATACATGAGGATCGAAGATGGAATGATGACAATACGTCTGTTAGAGAATGGTTATGTGTTGGAAGATATCCGTCCTTTCCAAAGGCTTCGTCTCAGATCAAGAAAAGCGGCTTTGAGCGACTGTATCTGTTTCCTTCGGCCTGATATCGATGTTTGTGTTCTCTATCGTATCCACGAGGATGACTTGGAACCGGTTTGGGTGGATGCGAGGATTGTTTCTATAGAGAGGAAGCCTCATGAGTCTGAATGCTCTTGCAAGATCAATGTTAGAATTTACATTGACCAAGGCTGCATTGGCTCGGAGAAACAGAGAATCAATAGAGATTCCGTGGTTATCGGTCTAAACCAAATCTCCATTCTCCAAAAGTTTTACAAGGAACAAAGTACTGATCAGTTCTACAGATGGAGATTCTCTGAGGACTGCACTTCCTTGATGAAAACAAGACTGTCTTTGGGAAAGTTCTTGCCGGATCTTTCGTGGTTGACTGTTACCTCAACTTTGAAAAGCATTGTGTTTCAAATAAGAACAGTGCAAACCAAGATGGTTTATCAGATTGTAACAGATGAAGAAGGCTCTAGCAGTACGTTGAGTTCGATGAATATTACTTTGGAAGACGGTGTTTCGTTATCAAAAGTGGTTAAGTTTAATCCGGCAGATATATTGGATGATTCTCAAGATCTTGAAATAAAGCAAGAAACCGATTATTATCAAGAAGAAGATGAGGTAGTGGAACTACGTAGGTCCAAAAGAAGAAACGTGAGACCGGATATCTACACCGGATGTGATTATGAGCCAGATACAATTGACGGTTGGGTGCGGATGATGCCGTACCAGTTTGGAAAATGTGCTGTTAATGTTGAGAGTGATGAAGACGAGGACGATAACAATGAGGATGGTGATACTAATGATGATTTGTATATACCATTATCGCGTTTATTCATCAAGAAAAAGAAAACTAATTCTCGAGAAGCGAAACCGAAAAGTCGAAAAGGCGAGATCGTTGTGATAGACAAGAGGAGAGTACATGGATTTGGTAGAAAAGAGAGGAAATCCGAGCTTTCGGTTATTCCTTTCACTCCGGTGTTTGAGCCTATACCGTTGGAACAGTTTGGTCTTAATGCTAACAGTTTTGGTGGGGGTGGTAGTTTCTCAAGAAGCCAGTACTTTGATGAGACTGAAAAGTATCGAAGTAAAGGCATGAAATACGGGAAGAAAATGACGGAAATGGAAGAGATGATGGAAGCTGATCTATGTTGGAAAGGTCCTAACCAGGTGAAGTCGTTTCAAAAACGAACATCCCGATCTTCGCGGTCAGTTGCTCCAAAAACAGAGGATTCTGATGAACCACGGGTCTATAAGAAAGTAACATTGAGTGCAGGTGCATATAACAAGCTGATAGATACATACATGAACAACATTGAGTCCACAATTGCAGCCAAGGACGAGCCTACCAGTGTTGTTGACCAGTGGGAGGAGTTAAAGAAGACGAATTTCGCATTTAAACTGCATGGGGATATGGAAAAGAACTTGAGTGAGGATGGTGAGGGAGAGACTTCAGAGAACGAAATGTTATGGAGAGAAATGGAACTATGCTTGGCTTCTTCTTACATTCTCGATGACAACGAGGTAAGAGTGGATAACGAGGCTTTCGAAAAGGCGAGAAGTGGTTGTGAGCACGATTATAGGCTGGAGGAAGAAATCGGGATGTGTTGCAGGTTATGTGGTCATGTAGGAAGTGAGATAAAAGATGTATCTGCACCATTTGCAGAACATAAGAAATGGACCATAGAGACTAAGCATATCGAAGAAGATGACATAAAGACTAAGTTGAGCCACAAAGAAGCCCAGACTAAAGATTTCTCTATGATAAGTGATTCTTCAGAAATGCTTGCGGCTGAAGAAAGTGACAACGTTTGGGCATTAATACCTAAGCTTAAGAGAAAACTACATGTGCATCAACGAAGAGCTTTCGAGTTTCTCTGGAGAAATGTAGCAGGATCTGTGGAACCCTCGCTTATGGATCCCACTTCAGGTAACATAGGTGGTTGTGTGATCTCTCATTCACCTGGAGCTGGTAAAACATTCCTAATCATTGCTTTCCTCACTAGCTACTTGAAGCTATTTCCCGGGAAAAGACCTTTGGTTCTTGCTCCTAAAACAACTTTGTACACATGGTACAAGGAGTTCATCAAATGGGAGATCCCAGTTCCGGTTCATTTGATCCACGGTCGAAGAACCTATTGTACCTTCAAACAGAACAAAACGGTTCAGTTCAATGGAGTTCCTAAACCGAGCCGAGATGTTATGCATGTTCTTGATTGCCTAGAAAAAATACAGAAATGGCATGCTCATCCGAGTGTTCTTGTAATGGGTTACACCTCGTTTACGACTTTGATGAGGGAAGACTCGAAGTTTGCTCACCGGAAATACATGGCTAAAGTGCTAAGAGAGAGTCCCGGGCTTCTTGTTCTTGATGAAGGGCATAACCCGAGGAGTACCAAGTCAAGACTACGTAAGGCCTTGATGAAAGTTGGTACTGACTTAAGAATACTTCTTTCGGGTACTTTGTTTCAGAACAACTTTTGCGAGTACTTCAACACGCTATGTTTGGCTAGACCAAAGTTTATTCATGAGGTTCTAATGGAGTTAGATCAGAAATTCAAGACCAATCACGGTGTGAATAAGGCGCCTCACTTGCTCGAGAATAGAGCTCGTAAATTATTCCTCGATATAATTGCCAAGAAGATTGATGCAAGCGTGGGAGATGAACGCCTTCAAGGTCTCAATATGTTGAAGAATATGACTAATGGTTTCATTGATAACTATGAAGGGAGTGGAAGTGGAAGTGGTGATGCTCTTCCAGGTCTACAGATCTATACATTAGTGATGAACTCGACGGATATACAGCATAAGATACTCACGAAACTTCAGGATGTAATAAAGACGTACTTTGGGTATCCACTTGAGGTCGAGCTTCAGATAACATTAGCAGCTATACATCCGTGGTTGGTCACAAGCTCAAACTGTTGCACAAAATTCTTCAACCCGCAAGAACTTTCCGAGATCGGAAAACTCAAGCACGACGCAAAGAAAGGATCTAAAGTCATGTTTGTGTTAAACCTTATTTTCCGAGTGGTCAAGAGGGAGAAGATCTTGATCTTTTGCCACAACATTGCGCCAATCCGTATGTTTACCGAACTGTTTGAGAACATTTTCAGGTGGCAAAGAGGCAGAGAGATCTTGACCTTAACCGGTGATCTTGAGCTGTTTGAAAGAGGTCGAGTGATAGACAAATTCGAAGAACCTGGAAACCCATCCCGAGTCCTCCTGGCCTCGATCACAGCTTGCGCAGAAGGGATTAGTCTGACCGCTGCTTCACGGGTCATCATGCTCGACTCAGAATGGAACCCTTCTAAGACAAAGCAAGCTATAGCTCGTGCATTCAGACCGGGACAGCAGAAAGTTGTTTACGTTTATCAGCTCTTGTCCAGAGGAACATTAGAGGAAGACAAGTACAGGAGGACAACATGGAAAGAGTGGGTCTCGTGTATGATATTCAGTGAGGAGTTTGTTGCGGATCCATCTCTGTGGCAAGCTGAGAAGATTGAAGATGATATTCTTAGAGAGATCGTTGGAGAAGATAAAGTTAAATCTTTCCATATGATCATGAAGAATGAGAAGGCTTCAACAGGGTAAATGAAGGTTTGTATACATAAAGAATAATGAGAGCCTGGAATTTTCCGCAAACAGAAACAAAAAGGTTAGTTCTCTGTTTTAGCCATGGCTTGGAAGATCCTAAGTCTCTGGAACTCATGTGTCATATACTAATAATGTGAATATGTATCATATACTAATAAGAAGAAAATGTATCATATACTAATAATGTGTAAGTCCGTCTCTAATAATGTGAAATATATCGAC
CDS Sequence
Protein Sequence