Information report for AT5G19820
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0005515 — enables — protein binding
- GO:0005737 — located in — cytoplasm
- GO:0005737 — is active in — cytoplasm
- GO:2000636 — acts upstream of or within — positive regulation of primary miRNA processing
- GO:0005634 — located in — nucleus
- GO:0009505 — located in — plant-type cell wall
- GO:0009536 — located in — plastid
- GO:0006606 — involved in — protein import into nucleus
- GO:0008139 — enables — nuclear localization sequence binding
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0061608 — enables — nuclear import signal receptor activity
- GO:0006606 — acts upstream of or within — protein import into nucleus
- GO:0090069 — acts upstream of or within — regulation of ribosome biogenesis
- GO:0005634 — is active in — nucleus
- CS24088 — Segregates 25% embryo lethal.
Functional Keywords
Literature and News
- HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis. DOI: 10.1242/dev.00362 ; PMID: 12620976
- Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling. DOI: 10.1007/s00294-003-0444-x ; PMID: 14523572
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- DNA array analyses of Arabidopsis thaliana lacking a vacuolar Na+/H+ antiporter: impact of AtNHX1 on gene expression. DOI: 10.1111/j.1365-313X.2004.02253.x ; PMID: 15546358
- Exploiting the wild crucifer Thlaspi arvense to identify conserved and novel genes expressed during a plant's response to cold stress. DOI: 10.1007/s11103-006-9080-4 ; PMID: 16972165
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- KETCH1 imports HYL1 to nucleus for miRNA biogenesis in Arabidopsis. DOI: 10.1073/pnas.1619755114 ; PMID: 28348234
- Regulation of Plant Microprocessor Function in Shaping microRNA Landscape. DOI: 10.3389/fpls.2018.00753 ; PMID: 29922322
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Arabidopsis KETCH1 Is Critical for the Nuclear Accumulation of Ribosomal Proteins and Gametogenesis. DOI: 10.1105/tpc.19.00791 ; PMID: 32086364
- The Small GTPase Superfamily in Plants: A Conserved Regulatory Module with Novel Functions. DOI: 10.1146/annurev-arplant-112619-025827 ; PMID: 32442390
- Arabidopsis cell wall proteome defined using multidimensional protein identification technology. DOI: 10.1002/pmic.200500046 ; PMID: 16287169
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: Q93VS8
- EMBL: AY035044, AY051083, CP002688
- AlphaFoldDB: Q93VS8
- EnsemblPlants: AT5G19820.1
- Gramene: AT5G19820.1
- KEGG: ath:AT5G19820
- Orthologous matrix: PKRFVQE
- ExpressionAtlas: AT5G19820
Sequences
cDNA Sequence
- >AT5G19820.1
ATCCCTTCACAACCTCATCCCTCCTTCGCTACCTTCGGACCTTCCTCATTCCTCCTCTTAGCTTTAGCCACTTTTTAACCCTAGTTTTTCCCGCCGCCACCATCCCCCATGGCTTCCGAGGCGAATCAGCTTCAGCAAGCGCAACTCGCGATGGTTCTCGGCTCCGATTCCGCGCCCTTCGAGACGCTAATCTCTCACCTCATGTCTTCTTCCAACGAGCAACGTTCCTCCGCCGAGTCTCTTTTCAATCTCGCTAAACAAAGCAATCCCGATACCCTCTCTTTGAAGCTTGCTCATCTTCTTCAGCTTTCTCCTCATCCCGAAGGTCGTGCTATGGCCGCCGTCCTTCTCCGGAAGTTGTTAACACGCGACGATGCTTATCTATGGCCTCGTCTCTCCCTCTCCACTCAATCTTCCCTCAAATCTTCGATGTTGTATTGTATTCAACATGAGGAGGCTAAATCGATCTCTAAGAAGATTTGCGATACAGTCTCTGAACTTGCATCCGGGATTTTACCGGAGAATGGATGGCCGGAGTTGCTTCCGTTTGTTTTCCAGTGTGTTACTTCTGTTACCCCTAAATTGCAGGAATCGGCGTTTTTAATCTTGGCTCAATTGTCGCAGTACGTTGGGGAGACTCTTACCCCTCACATCAAGGAACTCCATGGCGTGTTTCTTCAGTGCTTGAGTAGTAATTCTGCTAGCTCCGATGTTAAAATCGCCGCTCTCAACGCCGTGATTAGTTTCGTTCAGTGTCTGGCCAACTCAACGGAGAGAGATAGATTCCAAGATGTTTTGCCTGCGATGATCAGGACGTTGACCGAATCTCTGAACAATGGGAATGAAGCAACTGCACAGGAGGCACTTGAGCTTTTGATTGAATTGGCTGGTACCGAGCCACGGTTCCTTAGACGGCAACTTGTTGACATAGTTGGTTCGATGCTTCAGATTGCAGAGGCTGATTCCCTCGAGGAGAGTACACGTCATCTTGCGATTGAGTTTTTGGTTACTCTGGCTGAGGCGCGTGAGCGTGCCCCTGGTATGGTCAGGAAGCTTCCTCAGTTTATTGACAGGTTGTTTGCTGTTCTTATGAAGATGCTCGAGGATATTGAGGACGATCCTGCTTGGTACAGCGCTGAGACTGAGGATGAAGATGCTGGCGAGACAAGCAACTACAGCATGGGTCAAGAGTGTTTGGATCGGTTAGCAATTTCTCTGGGAGGAAACACCATTGTTCCGGTTGCATATCAGCAGTTTTCTGCTTACTTGGCTGCCTCTGAGTGGCAGAAACATCATGCTTCTTTGATTGCACTTGCTCAGATTGCTGAAGGTTGTTCAAAGGTGATGATAAAAAATCTAGACCAAGTGGTGTCAATGGTTTTGAGCCAGTTTCAAAGTCCTCATCCTCGCGTAAGGTGGGCTGCTATAAATGCGATTGGACAGTTGTCTACAGATTTGGGTCCAGATTTGCAAAACCAACATCATGAGAGAGTGCTCCCCGCACTTGCTGCTGCTATGGATGATTTCCAGAATCCACGAGTGCAGGCTCATGCTGCTTCAGCAGTACTCAACTTCAGTGAAAATTGTACTCCTGAAATATTGTCACCTTATTTAGACGGAGTAGTGAGCAAGTTACTTGTGCTACTACAAAATGGTAAACAAATGGTGCAAGAAGGAGCTTTAACTGCTCTTGCTTCAGTGGCTGATTCATCACAGGAACACTTTCAAAAGTACTATGATACTGTCATGCCTTATCTCAAAACTATTTTGATGAATGCAACTGACAAGTCTAAGCGGATGCTTCGTGCCAAATCCATGGAGTGCATCAGTCTTGTTGGAATGGCAGTTGGAAAGGACAGATTCAAGGAAGATGCTAGACAGGTCATGGAAGTGCTAATGTCATTGCAAGGTTCTCAGATGGAGGCAGACGATCCAATAACAAGTTACATGTTACAGGCATGGGCTAGGCTTTGCAAGTGTCTAGGTCAAGATTTCCTCCCATACATGAAGGTTGTGATGCCTCCTTTGCTTCAGTCAGCTCAACTTAAGCCAGATGTAACAATTACATCTGCTGATTCAGAAGATGAAGCAGAGGATTCTGATGATGAAAGCATGGAGACCATTATCCTGGGCGACAAAAGAATAGGGATCAAAACAAGTGTTCTAGAGGAAAAGGCCACGGCTTGTAACATGCTTTGTTGCTATGCTGATGAGTTAAAAGAAGGATTTTTTCCTTGGATTGATCAGGTTGCACCTACATTGGTTCCTTTACTGAAATTCTATTTTCACGAAGAAGTTAGAAGAGCAGCTGTTTCAGCCATGCCGGAACTAATGCGCTCAGCCAAGCTGGCAATAGAGAAAGGGGAATCTCAAGGGCGAGATCTATCATATTTGAAGCAGCTTTCTGACTACATTATTCCAGCCATGCTGGAAGCTTTGCATAAAGAACCTGATACAGAGATCTGTGTGAGTATGTTGGAAGCTATCAATGAATGCTTGCAGATCTCTGGAAATCTTTTGGATGAAGGGAAAATTAGATCCATAGTTGATGAGATAAAGCAAGTTATGACCGCAAGCTCTAGTAGGAAGCGAGAGAGGGGAGAGAGGGCCCATGCTGAAGACTTTGACGCTGAAGAGGGAGAGCTTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCAAGTCGGTGAAATATTGGGAACATTGGTTAAGACATTCAAGGCCTCATTTCTACCTTTCTTCGATGAACTGTCCTCTTACTTAACTCCTATGTGGGGAAGAGATAAAACAGCGGAAGAGAGAAGGATTGCTATATGCATTTTTGATGATGTAGCAGAACAATGCCGTGAAGCTGCCTTTAAATATTATGATACCTATCTTCCATTTGTACTGGAAGCTTGCAATGACGAGAGCCCAGAGGTTCGACAGGCTGCTGTTTATGGGCTTGGCGTTTGTGCTGAGTTTGGCGGCTCTGTATTCAAGCCTCTTATTGGAGAGGCTCTGTCAAGATTAAATGTTGTGATACAGCTGCCAAATGCTCGGCAATCTGAAAATGCCATGGCATATGATAATGCTGTATCAGCCGTGGGAAAGATCTGCCAATTTCACCGTGATAGTATTGATTCTTCTCAGGTACTTCCTGCGTGGTTGAACTGTTTGCCTATAAGCAATGATGTCCTTGAAGCCAAAGTGGTTCATGATCAGCTCTGCTCAATGGTTGAAAGGCAAGATGTAGACCTTTTAGGCCCCAATAACCAGCATCTTCCGAAAATCTTAATAGTTTTTGCCGAGGTACTTACAGGGAAAGATGTGGTGACACAAGAGACAGCAGGTCGTATGATAAATATATTAAGGCAACTTCAACAGACACTGCCACCATCGGCGTTGGCCTCAACATGGTCAACGCTGAAACCCGAACAGCAGCTCGCTCTCCAATCCATGCTTTCCTCCTAAATTCAATCCAATCCGATCTCTCTGTTTATTTTTACAGTTTTGTGAGCTCTGTTTTCACCACAAAGCGTCGTCAGTTTTGCATTTATGTGTTTACAAAAGTGTTTCTTCTTCTTTTGCATTTTTCATCTAATTCTTTTGGGAGGGATGATGATGGGTCGGTCCATCCTTCAGAAGTTACAAAATGAAAATTTCTATCTTTATGGTAGGAAGTGTATATTAGGAGGGAAGGATGAAATTGTTAGTGAAATGTGTCATTGGGTATGGTTCCCCAAATACACAGGTCTGCTGTTGGTGTCGGTGTTGGTTTGGGTTTGAGAGTGGGATGAAGTTTTGGTGCTTTATACGAGAAGGAACAAAACAGAAAGATTTGATTTTGAATTTTTGTTTTTGTATGCAATTGGGAATTTTGGAAGAATGATTCTTTTCTCTCATTGCCTTTGTTGATTTGTACTCTTTTGGACACTCTTCTTTGGCCTTTTCTTAATAAAAGAAATGTCTTTTTTATTTAATTTTATTATATCGTTGTCATATGATAAATTTATCAGACAGCAGCTAAG
CDS Sequence
Protein Sequence