Information report for AT5G19620
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0009941 — located in — chloroplast envelope
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0003674 — enables — molecular_function
- GO:0009507 — located in — chloroplast
- GO:0009793 — involved in — embryo development ending in seed dormancy
- GO:0009658 — involved in — chloroplast organization
- GO:0009658 — acts upstream of or within — chloroplast organization
- GO:0009536 — located in — plastid
- CS3009 — developmental arrest of mutant embryos occurs at transition, globular, small elongate stage; white seeds and embryos; 22.2% mutant.
- CS73193 — homozygous embryos arrest at globular stage
- CS73194 — homozygous embryos arrest at globular stage
- oep80-1 — Segregates for embryo lethal phenotype- 25% of embryos abort during globular stage.Arrested embryos have a raspberry like phenotype.
- oep80-2 — Segregates for embryo lethal phenotype- 25% of embryos abort during globular stage.Arrested embryos have a raspberry like phenotype.
Functional Keywords
Literature and News
- Functional analysis of the two Arabidopsis homologues of Toc34, a component of the chloroplast protein import apparatus. DOI: 10.1046/j.1365-313x.2000.00849.x ; PMID: 10998188
- An embryo-defective mutant of arabidopsis disrupted in the final step of biotin synthesis. DOI: 10.1104/pp.116.3.935 ; PMID: 9501126
- Mapping the Arabidopsis organelle proteome. DOI: 10.1073/pnas.0506958103 ; PMID: 16618929
- Targeting of nucleus-encoded proteins to chloroplasts in plants. DOI: 10.1111/j.1469-8137.2008.02452.x ; PMID: 19086173
- CIA2 coordinately up-regulates protein import and synthesis in leaf chloroplasts. DOI: 10.1104/pp.109.137240 ; PMID: 19386807
- Interaction of actin and the chloroplast protein import apparatus. DOI: 10.1074/jbc.M109.012831 ; PMID: 19435889
- Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes. DOI: 10.1371/journal.pone.0007386 ; PMID: 19812694
- The significance of protein maturation by plastidic type I signal peptidase 1 for thylakoid development in Arabidopsis chloroplasts. DOI: 10.1104/pp.109.151977 ; PMID: 20097790
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Insertion of plastidic β-barrel proteins into the outer envelopes of plastids involves an intermembrane space intermediate formed with Toc75-V/OEP80. DOI: 10.1093/plcell/koab052 ; PMID: 33624803
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- Mapping the Arabidopsis organelle proteome. DOI: 10.1073/pnas.0506958103 ; PMID: 16618929
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A178UCU2
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UCU2
- EnsemblPlants: AT5G19620.1
- Gramene: AT5G19620.1
- KEGG: ath:AT5G19620
- Orthologous matrix: PPYEAFC
- ExpressionAtlas: AT5G19620
- InterPro: IPR000184, IPR034746, IPR039910
- PANTHER: PTHR12815, PTHR12815:SF32
- PROSITE: PS51779
- Gene3D: 2.40.160.50, 3.10.20.310
- OrthoDB: A0A178UCU2
- SWISS-MODEL: A0A178UCU2
Sequences
cDNA Sequence
- >AT5G19620.1
ATCTTCTACTCCGAGTCTCCGAATCAAAAAAAACCCTAGCTCTTATTTTTTGTTCTTAGATTTTATCTCTTAAGCTCTTCTTCTTCCTTGACATTTCCTCAATTTCACTCCCGAGTACGATTAACAATGCATTGTCACAACGATGATGTTCGCTTCTCTTCATCTTCTATCAGAATCCATTCTCCATCTCCCAAAGAACAACACTCTTTACTCACCAATCTCCAATCCTGCTCTAAAACCTTCGTCTCTCACCTCTCAAATACTCGTAACTCACTAAACCAAATGCTCCAGTCGCTAAAGAATCGCCACACTCCTCCTCCACGTTCGGTTCGTCGTCCCAATTTACCGACTCAGATGCTCAATTCAGTAACCCAGCTTATGATTGGGAAGTCTTCTCCAATTTCATTGTCTCTTATCCAATCCACCCAATTCAATTGGTCTGAATCAAGAGATGAGAACGTTGAGACAATCCGTGGACTAAGCTCGCCTCTGCTCTGTTGTGCCTCTTTGTCTCTAACTAGACCTAACGAGTCGACTCAGTCAGTGGAAGGGAAGGATACAGTACAGCAGCAGAAGGGTCACTCGGTGAGTCGAAATGCGGAGGAACGAGTTCTGATTAGTGAGGTTTTAGTAAGAACGAAAGATGGTGAGGAACTTGAGAGGAAGGATTTGGAAATGGAGGCATTGGCTGCTTTGAAAGCTTGTAGAGCTAATTCAGCGTTGACTATTCGTGAGGTACAGGAGGATGTACATAGGATTATAGAAAGTGGGTACTTTTGCTCTTGTACTCCTGTTGCTGTTGATACACGAGACGGGATTCGGTTGATGTTTCAGGTAGAACCAAACCAAGAATTTCGTGGGTTAGTCTGTGAAAATGCAAATGTTCTTCCTTCCAAGTTCATACATGAAGCTTTCCGAGATGGGTTTGGGAAAGTGATTAATATTAAGAGACTGGAAGAAGCTATTACATCCATCAATGGATGGTACATGGAGCGTGGTCTTTTCGGAATTGTTTCAGATATTGATACGCTTTCTGGAGGTATAGTAAGGCTTCAGGTTGCTGAAGCAGAGGTTAACAACATATCCATCCGATTCCTTGATCGTAAGACTGGGGAACCAACTAAAGGGAAGACTAGCCCTGAGACAATACTACGGCAACTTACAACAAAGAAGGGACAGGTCTACAGCATGCTTCAAGGGAAGAGGGATGTAGACACTGTGCTAGCCATGGGAATCATGGAAGATGTTAGTATTATTCCTCAACCTGCAGGAGATAGTGGGAAGGTTGATTTGATCATGAACTGTGTCGAGCGTCCCAGTGGAGGCTTCTCTGCTGGTGGTGGGATATCTAGTGGGATCACAAGTGGCCCCCTATCAGGATTAATTGGAAGCTTCGCTTATTCCCACCGCAATCTGTTTGGAAGAAACCAGAAGCTTAATGTTTCCTTAGAGAGGGGTCAAATTGACTCTATATTTCGTATAAACTACACTGATCCATGGATTGAAGGAGATGACAAGAGGACGTCCAGATCTATTATGGTTCAGAATTCAAGAACACCGGGGAATCTTGTTCACGGCAATCAACCAGACAATAGTAGTCTCACAATTGGTCGGGTTACAGCAGGTGTTGAATACAGTCGTCCATTCAGGCCAAAGTGGAATGGTACTGCTGGACTTATATTTCAGCATGCTGGTGCTCGTGATGAACAAGGAAACCCTATCATTAAGGACTTCTACAGTAGCCCTCTAACTGCAAGTGGTAAGCCCCATGATGAGACCATGCTAGCAAAACTTGAAAGCATTTATACTGGCTCAGGTGACCAAGGATCAACGATGTTTGCGTTTAACATGGAACAAGGGCTTCCTGTTTTGCCCGAATGGTTATGTTTCAATCGAGTGACTGGACGTGCCAGGAAAGGCATACACATTGGACCAGCTCGTTTCCTTTTTAGTCTGTCTGGTGGACATGTGGTGGGAAAATTTTCACCTCATGAAGCATTCGTCATCGGTGGAACAAACAGCGTAAGAGGTTACGAAGAGGGCGCTGTAGGATCTGGTCGGTCATATGTAGTTGGTTCAGGGGAGCTGTCTTTCCCAGTGAGAGGACCGGTCGAAGGCGTCATTTTTACAGATTATGGCACTGATATGGGATCAGGATCCACCGTCCCAGGTGATCCTGCGGGGGCAAGACTGAAGCCCGGAAGCGGTTATGGATATGGTTTAGGGGTGCGTGTTGATTCCCCGTTGGGGCCGCTACGCCTTGAATATGCCTTCAACGATCAACATGCGGGAAGGTTTCACTTTGGGGTTGGTCTGCGGAACTAAATTTTCCTGTTTCTTTTTTAGATTCGATAAGTGTTTTGTCGGCCTTTGTCGCACATTCATCTAGATGATGCTTGTCTATTTTGATAATTTATATCATCTTATGTAACTCACTGTTTTGTGAGTGGTTTGTGCATGGAGAGAGATGTCGCGTATGAATGCTTTTCATGTAGATGATTTTCATTTTACCAAACTCCCAGTTAAAATTATTAATAGAACCAAGATTAGGATTTTTATTCTTCATCCTAGTATGAAC
CDS Sequence
Protein Sequence