Information report for AT5G19350
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0005829 — is active in — cytosol
- GO:0008143 — enables — poly(A) binding
- GO:0048573 — acts upstream of or within — photoperiodism, flowering
- GO:0005634 — located in — nucleus
- GO:0003729 — enables — mRNA binding
- GO:0003723 — enables — RNA binding
- GO:0034605 — involved in — cellular response to heat
- GO:0031047 — acts upstream of or within — regulatory ncRNA-mediated gene silencing
- GO:0005685 — located in — U1 snRNP
- GO:0000398 — acts upstream of or within — mRNA splicing, via spliceosome
- GO:0010494 — located in — cytoplasmic stress granule
- GO:0005515 — enables — protein binding
- GO:0005737 — located in — cytoplasm
Functional Keywords
Literature and News
- RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. DOI: 10.1017/s1355838200001163 ; PMID: 11105760
- Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants. DOI: 10.1007/s10059-011-0001-2 ; PMID: 21120628
- A Collection of Pre-mRNA Splicing Mutants in Arabidopsis thaliana. DOI: 10.1534/g3.119.400998 ; PMID: 32265287
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- The U1 snRNP component RBP45d regulates temperature-responsive flowering in Arabidopsis. DOI: 10.1093/plcell/koab273 ; PMID: 34791475
- The RNA-binding protein RBP45D of Arabidopsis promotes transgene silencing and flowering time. DOI: 10.1111/tpj.15637 ; PMID: 34919766
- A genetic screen in Arabidopsis reveals the identical roles for RBP45d and PRP39a in 5' cryptic splice site selection. DOI: 10.3389/fpls.2022.1086506 ; PMID: 36618610
- RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells. DOI: 10.1017/s1355838200001163 ; PMID: 11105760
Gene Resources
- UniProt: A0A178UT26
- EMBL: CACRSJ010000110, CACSHJ010000096, LUHQ01000005
- AlphaFoldDB: A0A178UT26
- EnsemblPlants: AT5G19350.1
- Gramene: AT5G19350.1
- KEGG: ath:AT5G19350
- Orthologous matrix: YVKIPAN
- ExpressionAtlas: AT5G19350
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR47640, PTHR47640:SF16
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- OrthoDB: A0A178UT26
- SWISS-MODEL: A0A178UT26
- Conserved Domain Database: cd12344, cd12345
Sequences
cDNA Sequence
- >AT5G19350.1
AATTAATTTGGCGTCTATAAACAGAGAAATTAAAATAAATTCCTTTTTCTAAATTTCGTTTACATCGAATTACCCAAAATCCTAAAAATATACAAAAATAAAAATAATTGATAGACCGGTCGGGATATTTGGCGAGCCGACCCGTCGCGTCGTGGGTTTAGGTTTAACGTATTGGCGCGCCAGTGAAGAAAATAGACGACGATGGCGATGATGCATCCTCCGCAGCCGCCGCAAGGCTCCTATCACCATCCTCAGACGCTCGAAGAAGTTCGAACTCTTTGGATTGGTGATTTGCAGTACTGGGTCGACGAAAATTACCTCACTTCCTGCTTCTCCCAAACCGGCGAGCTCGTTTCTGTCAAGGTAATACGTAACAAGATCACGGGACAGCCAGAGGGGTATGGTTTTATAGAGTTTATATCTCATGCAGCAGCAGAGAGAACTCTGCAGACGTACAATGGGACACAGATGCCTGGAACTGAGTTAACTTTTCGGTTAAATTGGGCTTCTTTTGGTTCAGGACAGAAAGTTGATGCTGGACCTGATCATTCTATCTTTGTTGGAGATTTAGCACCTGATGTTACAGATTATCTTCTTCAAGAGACATTCCGTGTTCATTATTCTTCTGTTAGAGGTGCCAAGGTTGTTACTGATCCAAGTACTGGACGATCAAAGGGTTATGGATTTGTAAAATTTGCAGAGGAAAGTGAAAGGAATCGGGCTATGGCTGAAATGAATGGTTTGTATTGCTCAACAAGGCCTATGCGTATTAGCGCAGCAACACCTAAAAAAAACGTCGGTGTGCAGCAACAATATGTCACCAAAGCTGTTTACCCAGTTACAGTCCCATCTGCAGTTGCTGCACCAGTCCAAGCATACGTTGCTCCACCTGAAAGTGATGTCACCTGTACAACGATTTCAGTTGCCAATTTGGACCAAAATGTTACAGAGGAAGAGCTGAAGAAAGCATTCTCCCAATTAGGAGAGGTTATTTATGTCAAAATACCTGCAACAAAGGGATATGGTTATGTTCAATTCAAAACCAGGCCTTCTGCAGAAGAAGCTGTTCAAAGAATGCAGGGACAAGTGATTGGTCAACAAGCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACAGGATGGTTGGGTTACACAAGCAGATCCGAATCAGTGGAATGGGTATTATGGTTATGGGCAAGGCTATGATGCATATGCTTATGGGGCAACTCAAGATCCATCCGTGTACGCATATGGTGGATATGGCTATCCCCAGTATCCGCAACAGGGAGAGGGTACACAAGACATTTCGAACTCTGCGGCGGGTGGAGTAGCAGGTGCAGAGCAAGAGTTGTATGATCCTCTGGCCACTCCTGATGTAGACAAGTTAAATGCTGCTTACCTTTCGGTTCATGCAAGTGCCATATTAGGAAGGCCAATGTGGCAGCGGACCTCATCGCTCACATCACAATTGGGCAAATGATCGGGAAGAGAAGAATAAAATGGTGGGTGCTTTGAGATGTTTAGTGTGTCCATTTCACTGCTCTTTGTCTGATTGTTTGGGATTTTTCTGTAATCTACAGTTAGGATCTAGTTACAATGCAAAATCATGAATCTTCCAACTTTTCTGCCATGGTCAATGATAATGCCTTTTACTTTTTTACTCACCCG - >AT5G19350.2
AATTAATTTGGCGTCTATAAACAGAGAAATTAAAATAAATTCCTTTTTCTAAATTTCGTTTACATCGAATTACCCAAAATCCTAAAAATATACAAAAATAAAAATAATTGATAGACCGGTCGGGATATTTGGCGAGCCGACCCGTCGCGTCGTGGGTTTAGGTTTAACGTATTGGCGCGCCAGTGAAGAAAATAGACGACGATGGCGATGATGCATCCTCCGCAGCCGCCGCAAGGCTCCTATCACCATCCTCAGACGCTCGAAGAAGTTCGAACTCTTTGGATTGGTGATTTGCAGTACTGGGTCGACGAAAATTACCTCACTTCCTGCTTCTCCCAAACCGGCGAGCTCGTTTCTGTCAAGGTAATACGTAACAAGATCACGGGACAGCCAGAGGGGTATGGTTTTATAGAGTTTATATCTCATGCAGCAGCAGAGAGAACTCTGCAGACGTACAATGGGACACAGATGCCTGGAACTGAGTTAACTTTTCGGTTAAATTGGGCTTCTTTTGGTTCAGGACAGAAAGTTGATGCTGGACCTGATCATTCTATCTTTGTTGGAGATTTAGCACCTGATGTTACAGATTATCTTCTTCAAGAGACATTCCGTGTTCATTATTCTTCTGTTAGAGGTGCCAAGGTTGTTACTGATCCAAGTACTGGACGATCAAAGGGTTATGGATTTGTAAAATTTGCAGAGGAAAGTGAAAGGAATCGGGCTATGGCTGAAATGAATGGTTTGTATTGCTCAACAAGGCCTATGCGTATTAGCGCAGCAACACCTAAAAAAAACGTCGGTGTGCAGCAACAATATGTCACCAAAGCTGTTTACCCAGTTACAGTCCCATCTGCAGTTGCTGCACCAGTCCAAGCATACGTTGCTCCACCTGAAAGTGATGTCACCTGTACAACGATTTCAGTTGCCAATTTGGACCAAAATGTTACAGAGGAAGAGCTGAAGAAAGCATTCTCCCAATTAGGAGAGGTTATTTATGTCAAAATACCTGCAACAAAGGGATATGGTTATGTTCAATTCAAAACCAGGCCTTCTGCAGAAGAAGCTGTTCAAAGAATGCAGGGACAAGTGATTGGTCAACAAGCAGTTCGCATCTCTTGGAGTAAAAATCCAGGACAGGATGGTTGGGTTACACAAGCAGATCCGAATCAGTGGAATGGGTATTATGGTTATGGGCAAGGCTATGATGCATATGCTTATGGGGCAACTCAAGATCCATCCGTGTACGCATATGGTGGATATGGCTATCCCCAGTATCCGCAACAGGGAGAGGGTACACAAGACATTTCGAACTCTGCGGCGGGTGGAGTAGCAGGTGCAGAGCAAGAGTTGTATGATCCTCTGGCCACTCCTGATGTAGACAAGTTAAATGCTGCTTACCTTTCGGTTCATGCAAGTGCCATATTAGGAAGGCCAATGTGGCAGCGGACCTCATCGCTCACATCACAATTGGGCAAATGATCGGGAAGAGAAGAATAAAATGGTGGGTGCTTTGAGATGTTTAGTGTGTCCATTTCACTGCTCTTTGTCTGATTGTTTGGGATTTTTCTGTAATCTACAGTTAGGATCTAGTTACAATGCAAAATCATGAATCTTCCAACTTTTCTGCCATGGTCAATGATAATGCCTTTTACTTTTTTACTCACCCG
CDS Sequence
Protein Sequence