Information report for AT5G19310
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0045944 — involved in — positive regulation of transcription by RNA polymerase II
- GO:0042393 — enables — histone binding
- GO:0010078 — involved in — maintenance of root meristem identity
- GO:0031490 — enables — chromatin DNA binding
- GO:0010231 — involved in — maintenance of seed dormancy
- GO:0003677 — enables — DNA binding
- GO:0008094 — enables — ATP-dependent activity, acting on DNA
- GO:0009826 — acts upstream of or within — unidimensional cell growth
- GO:0005634 — located in — nucleus
- GO:0005634 — is active in — nucleus
- GO:0010492 — involved in — maintenance of shoot apical meristem identity
Functional Keywords
Literature and News
- The Arabidopsis thaliana SNF2 homolog AtBRM controls shoot development and flowering. DOI: 10.1242/dev.01363 ; PMID: 15371304
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- Unique, shared, and redundant roles for the Arabidopsis SWI/SNF chromatin remodeling ATPases BRAHMA and SPLAYED. DOI: 10.1105/tpc.106.048272 ; PMID: 17293567
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Mutations in two non-canonical Arabidopsis SWI2/SNF2 chromatin remodeling ATPases cause embryogenesis and stem cell maintenance defects. DOI: 10.1111/tpj.12009 ; PMID: 23062007
- The TRIPLE PHD FINGERS proteins are required for SWI/SNF complex-mediated +1 nucleosome positioning and transcription start site determination in Arabidopsis. DOI: 10.1093/nar/gkac826 ; PMID: 36189880
- Comprehensive characterization of three classes of Arabidopsis SWI/SNF chromatin remodelling complexes. DOI: 10.1038/s41477-022-01282-z ; PMID: 36471048
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A1P8BAR5
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BAR5
- EnsemblPlants: AT5G19310.2
- Gramene: AT5G19310.2
- ExpressionAtlas: AT5G19310
- InterPro: IPR000330, IPR001650, IPR014001
- PANTHER: PTHR10799
- SUPFAM: SSF52540
- PROSITE: PS51192, PS51194
- Gene3D: 3.40.50.10810, 3.40.50.300
- SWISS-MODEL: A0A1P8BAR5
- Conserved Domain Database: cd18793
Sequences
cDNA Sequence
- >AT5G19310.2
TGATTTTTTAAACTCTTTGTTCAGAGGTTATTACGGTTAGAAGAAGAGGAGAAGAATCTGATTGAAACGACACAGAGGAAATTCTTTGCAGAAGTACTCAATGCTGTTCGTGAATTCCAGTTGCAAATTCAGGCGTCTCATAGACGGTGTAAGCAAAGAAATGATGGTGTCCAGGCCTGGCATGGAAAGCAAAGGCAACGTGCCACCCGAGCTGAAAAACTAAGGATCATGGCCCTTAAATCTGATGATCAAGAGGAATACATGAAACTAGCAAAGGAAAGTAAGAACGAAAAACTAACCCTTTTTCTAGAGGAGACAAACAAAATCTTTGTTAGTTTGGGGGCTGCAGTCCAGCGTCAGAAAGATGCCAAACTTTCAGAAAACACCAAATTACTGAAAGGCTCAGAATCTGACTTATCTGATGTTGATGCTCCTGAGGATGTGCTTCCTGCCCAAGATATTGAGATCATTGACTCTGACAATAATGATGATTCTAATGACTTACTAGAAGGCGAGAGGCAGTTTAACTTGGCTATCCATTCCATACAAGAGAAGGTGACAAAGCAGCCATCCCTTCTACAAGGTGGGGAACTAAGATCCTATCAATTAGAAGGACTTCAATGGATGGTCTCTCTATACAACAATGACTATAATGGCATTTTAGCTGATGAAATGGGTTTAGGAAAGACTATCCAAACGATTGCACTGATTGCGTATCTTCTTGAGAGTAAAGATCTTCATGGGCCTCATCTAATATTGGCTCCAAAAGCTGTGCTACCAAATTGGGAAAATGAGTTTGCATTATGGGCACCCAGCATTTCCGCTTTTCTTTACGATGGATCAAAGGAGAAAAGAACTGAAATAAGAGCAAGAATAGCAGGAGGAAAATTTAATGTGTTGATAACCCACTACGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGACTGGAACTACATGATTGTTGATGAAGGACATCGTCTGAAGAACCATGAATGTGCTCTCGCAAAGACTCTAGGAACTGGCTACCGGATTAAGCGCAGACTTCTATTAACTGGAACTCCCATACAGAACAGTCTGCAAGAACTATGGTCGCTGCTTAATTTTCTTCTTCCTCACATCTTTAACTCAATTCATAATTTCGAAGAATGGTTTAATACTCCATTCGCAGAATGTGGTAGTGCCAGTCTTACAGATGAAGAGGAGCTGTTGATTATTAACCGTCTGCATCATGTCATAAGGCCGTTTCTACTGAGAAGGAAAAAAAGTGAGGTTGAGAAATTCCTTCCTGGAAAGACACAAGTCATACTGAAGTGTGATATGTCGGCTTGGCAAAAATTGTATTACAAACAAGTTACAGACGTAGGCAGGGTCGGTCTTCATTCTGGCAATGGGAAATCAAAGAGTCTGCAGAATCTGACAATGCAATTAAGAAAGTGTTGTAACCATCCGTACCTATTCGTTGGAGCAGATTATAACATGTGTAAGAAGCCTGAGATTGTGAGAGCTTCAGGAAAATTCGAGTTACTTGATCGCCTCCTTCCAAAACTGAAGAAAGCTGGACATAGAATTCTGCTCTTTTCTCAAATGACTCGTCTCATTGACCTTCTCGAAATTTACTTGTCACTCAATGACTACATGTACCTCAGACTTGACGGTAGCACAAAGACAGACCAAAGAGGGATTTTACTGAAGCAATTCAACGAACCGGACTCTCCCTACTTTATGTTTCTTCTGAGCACACGTGCTGGTGGTCTTGGTTTGAACTTACAAACTGCAGACACTATAATTATATTTGACAGTGATTGGAATCCACAAATGGACCAGCAAGCAGAGGATCGTGCTCATCGGATAGGGCAGAAAAAGGAAGTGAGAGTTTTTGTTTTGGTTAGCATTGGATCCATTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATCGATGCGAAAGTCATACAAGCAGGGCTCTTCAACACAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAAGAGATCATGAGCAAAGGAACAAGCTCACTGGGAGAAGATGTGCCAAGTGAGAGAGAGATTAACCGGCTCGCAGCTCGAACTGAGGAAGAGTTTTGGATGTTTGAACAAATGGACGAGGAAAGACGTAAAAAGGAGAACTACAAGACACGTCTCATGGAAGAGAAGGAAGTTCCCGAGTGGGCTTACACTTCAGAGACTCAAGAAGACAAGACTAACGCGAAAAACCATTTTGGTAGCCTCACGGGTAAACGGAAACGAAAAGAAGCAGTGTATAGCGACTCTTTAAGCGATTTGCAGTGGATGAAAGCGATGGAGAGTGAAGACGAAGATGCTTCCAAAGTCTCTCAGAAACGAAAGAGAACGGACACAAAGACAAGAATGAGTAATGGGTCAAAGGCAGAGGCTGTGTTGAGTGAAAGCGATGAGGAAAAAGAAGAAGAAGAAGAAGAAAGGAAGGAGGAGAGTGGGAAAGAGAGTGAAGAAGAAAATGAGAAGCCATTACATAGTTGGAAAACTAATAAGAAGAAACGGTCAAGATACCCTGTTATGACTTCTTCACCTAATTCTAGAGGTAAAGGTAGCTCAAAAGGAAGTAAACGAAACTGAGAATAAGGTTTCTACAAGTATTAGGCATTTGAGTTGGTCTACAAGTATTAAGCATCGAGCCATTTTCTCATAAATTTGTCTGTTTTTTTTATAATTCAAACCTTGTGAAAAATATATCTTTTTAGAATTCAGAGCTTAAAAAGATGAGAGGGGGAAATTGGAAAAAAAATATAGATATCGACCGTTGAATTTAATAGGGTGGTTATT - >AT5G19310.1
TGATTTTTTAAACTCTTTGTTCAGAGGTTATTACGGTTAGAAGAAGAGGAGAAGAATCTGATTGAAACGACACAGAGGAAATTCTTTGCAGAAGTACTCAATGCTGTTCGTGAATTCCAGTTGCAAATTCAGGCGTCTCATAGACGGTGTAAGCAAAGAAATGATGGTGTCCAGGCCTGGCATGGAAAGCAAAGGCAACGTGCCACCCGAGCTGAAAAACTAAGGATCATGGCCCTTAAATCTGATGATCAAGAGGAATACATGAAACTAGCAAAGGAAAGTAAGAACGAAAAACTAACCCTTTTTCTAGAGGAGACAAACAAAATCTTTGTTAGTTTGGGGGCTGCAGTCCAGCGTCAGAAAGATGCCAAACTTTCAGAAAACACCAAATTACTGAAAGGCTCAGAATCTGACTTATCTGATGTTGATGCTCCTGAGGATGTGCTTCCTGCCCAAGATATTGAGATCATTGACTCTGACAATAATGATGATTCTAATGACTTACTAGAAGGCGAGAGGCAGTTTAACTTGGCTATCCATTCCATACAAGAGAAGGTGACAAAGCAGCCATCCCTTCTACAAGGTGGGGAACTAAGATCCTATCAATTAGAAGGACTTCAATGGATGGTCTCTCTATACAACAATGACTATAATGGCATTTTAGCTGATGAAATGGGTTTAGGAAAGACTATCCAAACGATTGCACTGATTGCGTATCTTCTTGAGAGTAAAGATCTTCATGGGCCTCATCTAATATTGGCTCCAAAAGCTGTGCTACCAAATTGGGAAAATGAGTTTGCATTATGGGCACCCAGCATTTCCGCTTTTCTTTACGATGGATCAAAGGAGAAAAGAACTGAAATAAGAGCAAGAATAGCAGGAGGAAAATTTAATGTGTTGATAACCCACTACGATCTTATCATGAGAGATAAAGCATTTTTGAAGAAAATTGACTGGAACTACATGATTGTTGATGAAGGACATCGTCTGAAGAACCATGAATGTGCTCTCGCAAAGACTCTAGGAACTGGCTACCGGATTAAGCGCAGACTTCTATTAACTGGAACTCCCATACAGAACAGTCTGCAAGAACTATGGTCGCTGCTTAATTTTCTTCTTCCTCACATCTTTAACTCAATTCATAATTTCGAAGAATGGTTTAATACTCCATTCGCAGAATGTGGTAGTGCCAGTCTTACAGATGAAGAGGAGCTGTTGATTATTAACCGTCTGCATCATGTCATAAGGCCGTTTCTACTGAGAAGGAAAAAAAGTGAGGTTGAGAAATTCCTTCCTGGAAAGACACAAGTCATACTGAAGTGTGATATGTCGGCTTGGCAAAAATTGTATTACAAACAAGTTACAGACGTAGGCAGGGTCGGTCTTCATTCTGGCAATGGGAAATCAAAGAGTCTGCAGAATCTGACAATGCAATTAAGAAAGTGTTGTAACCATCCGTACCTATTCGTTGGAGCAGATTATAACATGTGTAAGAAGCCTGAGATTGTGAGAGCTTCAGGAAAATTCGAGTTACTTGATCGCCTCCTTCCAAAACTGAAGAAAGCTGGACATAGAATTCTGCTCTTTTCTCAAATGACTCGTCTCATTGACCTTCTCGAAATTTACTTGTCACTCAATGACTACATGTACCTCAGACTTGACGGTAGCACAAAGACAGACCAAAGAGGGATTTTACTGAAGCAATTCAACGAACCGGACTCTCCCTACTTTATGTTTCTTCTGAGCACACGTGCTGGTGGTCTTGGTTTGAACTTACAAACTGCAGACACTATAATTATATTTGACAGTGATTGGAATCCACAAATGGACCAGCAAGCAGAGGATCGTGCTCATCGGATAGGGCAGAAAAAGGAAGTGAGAGTTTTTGTTTTGGTTAGCATTGGATCCATTGAAGAAGTAATATTGGAGCGTGCAAAGCAAAAGATGGGCATCGATGCGAAAGTCATACAAGCAGGGCTCTTCAACACAACTTCTACTGCTCAAGACAGGAGAGAGATGCTGGAAGAGATCATGAGCAAAGGAACAAGCTCACTGGGAGAAGATGTGCCAAGTGAGAGAGAGATTAACCGGCTCGCAGCTCGAACTGAGGAAGAGTTTTGGATGTTTGAACAAATGGACGAGGAAAGACGTAAAAAGGAGAACTACAAGACACGTCTCATGGAAGAGAAGGAAGTTCCCGAGTGGGCTTACACTTCAGAGACTCAAGAAGACAAGACTAACGCGAAAAACCATTTTGGTAGCCTCACGGGTAAACGGAAACGAAAAGAAGCAGTGTATAGCGACTCTTTAAGCGATTTGCAGTGGATGAAAGCGATGGAGAGTGAAGACGAAGATGCTTCCAAAGTCTCTCAGAAACGAAAGAGAACGGACACAAAGACAAGAATGAGTAATGGGTCAAAGGCAGAGGCTGTGTTGAGTGAAAGCGATGAGGAAAAAGAAGAAGAAGAAGAAGAAAGGAAGGAGGAGAGTGGGAAAGAGAGTGAAGAAGAAAATGAGAAGCCATTACATAGTTGGAAAACTAATAAGAAGAAACGGTCAAGATACCCTGTTATGACTTCTTCACCTAATTCTAGAGGTAAAGGTAGCTCAAAAGGAAGTAAACGAAACTGAGAATAAGGTTTCTACAAGTATTAGGCATTTGAGTTGGTCTACAAGTATTAAGCATCGAGCCATTTTCTCATAAATTTGTCTGTTTTTTTTATAATTCAAACCTTGTGAAAAATATATCTTTTTAGAATTCAGAGCTTAAAAAGATGAGAGGGGGAAATTGGAAAAAAAATATAGATATCGACCGTTGAATTTAATAGGGTGGTTATT
CDS Sequence
Protein Sequence