Information report for AT5G18620
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Functional Keywords
Literature and News
- A genome-wide identification of E2F-regulated genes in Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01662.x ; PMID: 12609051
- Genome-wide identification of potential plant E2F target genes. DOI: 10.1104/pp.105.066290 ; PMID: 16126853
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- The role of a zinc finger-containing glycine-rich RNA-binding protein during the cold adaptation process in Arabidopsis thaliana. DOI: 10.1093/pcp/pcj047 ; PMID: 16608866
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. DOI: 10.1111/j.1365-313X.2012.05074.x ; PMID: 22694359
- Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy. DOI: 10.1038/s41467-018-07763-0 ; PMID: 30538233
- A plant-specific SWR1 chromatin-remodeling complex couples histone H2A.Z deposition with nucleosome sliding. DOI: 10.15252/embj.2019102008 ; PMID: 32115743
- Dual Recognition of H3K4me3 and DNA by the ISWI Component ARID5 Regulates the Floral Transition in Arabidopsis. DOI: 10.1105/tpc.19.00944 ; PMID: 32358072
- The chromatin remodeling complex imitation of switch controls stamen filament elongation by promoting jasmonic acid biosynthesis in Arabidopsis. DOI: 10.1016/j.jgg.2021.02.003 ; PMID: 33903069
- DDT-RELATED PROTEIN4-IMITATION SWITCH alters nucleosome distribution to relieve transcriptional silencing in Arabidopsis. DOI: 10.1093/plcell/koad143 ; PMID: 37208763
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism. DOI: 10.1021/pr1009433 ; PMID: 21166475
Gene Resources
- UniProt: A0A178UKL4
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178UKL4
- EnsemblPlants: AT5G18620.1
- Gramene: AT5G18620.1
- KEGG: ath:AT5G18620
- Orthologous matrix: FTHINCK
- ExpressionAtlas: AT5G18620
- InterPro: IPR000330, IPR001005, IPR001650
- PANTHER: PTHR45623, PTHR45623:SF49
- SUPFAM: SSF101224, SSF46689, SSF52540
- PROSITE: PS51192, PS51194, PS51293
- Gene3D: 1.10.10.60, 1.10.1040.30, 1.20.5.1190
- SWISS-MODEL: A0A178UKL4
- Conserved Domain Database: cd00167, cd17997, cd18793
Sequences
cDNA Sequence
- >AT5G18620.1
GTTTGTTGCTTTTAATTTCACTTTTGTTTATTTACTAACCAAAGCAAAAAAAACTCAGGAACCCTCGATTCGATCTCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAGAGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGTTAACGATCAGGCCAATGTGGAAGAAGATGATGACGAGCTCGAGGCCGTCGCTCGCTCTGCGGGCTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGAGGTTGTCCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAAACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAATCTTAGACTCCCAAAATGCTTCCATAGATGCTGATATGAACAATAAAGGAAAGGGGAGGATAAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTCCGTCCCAGAAGAAGGGAAAAGGAAGGGGTCGCCATTCTTCCAAACTAACCGAGGAAGAGGAAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTATAGTTGGATCTGGAGGCACACGGTTGCTCACTCAGCCCGCTTGTATTCAGGGGAAGTTAAGAGATTACCAATTAGCTGGTTTAAACTGGCTCATTCGGCTGTATGAGAACGGCATAAATGGGATTCTTGCAGATGAAATGGGTCTGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTAATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAAGACATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTAACAAGCTTTGAGATGGCTATCAAAGAGAAGACAACATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATGAAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCACCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGGCCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGCGACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGGAGACAATACTCAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGCAGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGCAAACGTCTGTTGAACATAGCAATGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCCCATATACTACAGGAGATCACCTTGTAACAAACGCAGGTAAGATGGTTCTCTTAGATAAATTGCTACCTAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGCTTTTGGATATTCTCGAGGATTACCTAATGTATCGTGGTTACCAGTACTGCCGTATTGATGGAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTATAACAAGCCAGGAAGTGAGAAATTCGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTGCAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGGATCGTGCACATAGGATTGGTCAAAAAAAAGAAGTTCAAGTGTTCCGGTTCTGCACCGAGAATGCTATTGAGGCTAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGGTTATTCAGCAAGGGAGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAATGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACGGATGAGGATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATTTTGACGATGACAACAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATTGGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAGTTGAATACTTCAAGCAAACGTTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCCAATTGCATGATTTTCAGTTCTTTAACATTCAGAGGCTGACTGAGCTGTATGAAAAAGAAGTGCGATACCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGAGGTTGATGAACCTGAAGAAGTTGGAGATCCCTTAACTGCTGAAGAAGTGGAAGAAAAGGAGCTATTGCTGGAAGAGGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATTAGGGCTTGTGAGAAGTATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAGGGAAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGTGCGATATAAAGAGCTGAATGATTACGACAGAATCATCAAGAATATTGAGAGAGGGGAAGCAAGAATCTCTAGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAACTGAAGATTCAATATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTCATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTTCGGACATCCCCCTTGTTTAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTTGCAAGGAGATGTGACACACTAATCAGGTTGATTGAGAAAGAGAATCAAGAATTTGATGAGAGAGAGAGGCAAGCCCGAAAAGAGAAGAAGCTTTCAAAGAGTGCAACGCCATCAAAACGACCTTCGGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTGTCAATGGATGATTATGGAAAGCGTAGGAAATAAGAAGGCTTGTGTTGAATCCATCACTAAGTAATCAGAAAGATTTATGATCACTTCTAGGTTTGATTCCGAATCGGAGAATTAGTTAGAAGAAGCTCCTTAGAGACAAGGATCTAATATTTTGTACCCGCAAGCATCACTGCATTGTCTCCGACTTCTCTTATTTCTTCAACGTGTATTTTACTCTATTTTGTTTGTAGAAATATTCACCACATTCCTAGTAGTGCGTTTTTAGTAAATCTCAAATCAACTTTTGTGGTCGGATTTGAACAAAACATAACTCTCTCGTCTCTTCTCATGTTGTCACAACTTCCCAATTGAGTGTGACAAATGTAGATTTGTAGATGATAAGAGAAGTCTTTCAAAGATAGATTTTTTTTCTTCTTTTCCTTCTGTCTGTAGACTCGAAACCTGAATCCATACACAATGAGACATTAAATAGTACAGAAAAATTATAAAAATCGACTCGAATCCTCCCTCCCATATTACATATACAACCCATTG - >AT5G18620.2
GTTTGTTGCTTTTAATTTCACTTTTGTTTATTTACTAACCAAAGCAAAAAAAACTCAGGAACCCTCGATTCGATCTCTCAGACGAAATCAGGATTCGTAGAGGCGCGTCGATGGCTAGAGCTTCGAAGCGGGAAGTTTCTTCAGACGAGGCTTACTCGTCGGAGGAAGAGGAGCAAGTTAACGATCAGGCCAATGTGGAAGAAGATGATGACGAGCTCGAGGCCGTCGCTCGCTCTGCGGGCTCTGACGAGGAAGATGTTGCGCCCGACGAAGCACCTGTCTCTGACGACGAGGTTGTCCCCGTAGAAGATGACGCTGAAGAGGACGAAGAAGACGAGGAGAAAGCTGAGATCAGCAAACGTGAGAAGGCTAGACTCAAAGAAATGCAGAAGATGAAGAAGCAGAAAATTCAGCAAATCTTAGACTCCCAAAATGCTTCCATAGATGCTGATATGAACAATAAAGGAAAGGGGAGGATAAAGTATCTTCTGCAGCAAACTGAGTTATTTGCACATTTTGCTAAAAGTGACCCGTCTCCGTCCCAGAAGAAGGGAAAAGGAAGGGGTCGCCATTCTTCCAAACTAACCGAGGAAGAGGAAGATGAAGAGTGTTTAAAAGAAGAAGAGGGTGGTATAGTTGGATCTGGAGGCACACGGTTGCTCACTCAGCCCGCTTGTATTCAGGGGAAGTTAAGAGATTACCAATTAGCTGGTTTAAACTGGCTCATTCGGCTGTATGAGAACGGCATAAATGGGATTCTTGCAGATGAAATGGGTCTGGGGAAGACGCTTCAAACCATTTCTTTGTTGGCTTACCTGCATGAGTACAGGGGAATTAATGGCCCTCATATGGTAGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAAGACATATTCGTGAAGAACTGCTAGTTGCAGGGAAATTCGACATTTGTGTAACAAGCTTTGAGATGGCTATCAAAGAGAAGACAACATTGCGCCGTTTTAGCTGGCGATATATAATCATTGATGAAGCACATCGAATTAAAAATGAGAATTCACTCCTTTCGAAAACCATGAGACTTTTCAGCACCAACTATCGGCTTCTTATCACGGGAACCCCCCTTCAGAATAATCTCCATGAATTGTGGGCCCTTCTCAATTTTCTTCTCCCTGAGGTTTTTAGTTCAGCAGAAACTTTTGACGAGTGGTTTCAAATTTCTGGTGAAAACGACCAGCAAGAAGTTGTTCAACAACTTCACAAGGTTCTGCGACCATTTCTTCTTCGGAGGTTAAAATCAGATGTAGAGAAAGGCTTACCTCCAAAAAAGGAGACAATACTCAAAGTTGGCATGTCTCAAATGCAAAAACAGTACTACAAGGCTTTACTGCAGAAGGATCTTGAAGTGGTTAATGGTGGTGGAGAACGCAAACGTCTGTTGAACATAGCAATGCAATTGCGGAAATGCTGCAATCACCCTTATCTCTTCCAGGGTGCGGAGCCTGGTCCCCCATATACTACAGGAGATCACCTTGTAACAAACGCAGGTAAGATGGTTCTCTTAGATAAATTGCTACCTAAGTTGAAGGATCGAGATTCAAGGGTTCTGATATTTTCTCAGATGACAAGGCTTTTGGATATTCTCGAGGATTACCTAATGTATCGTGGTTACCAGTACTGCCGTATTGATGGAAATACTGGTGGTGACGAACGAGATGCTTCCATAGAAGCCTATAACAAGCCAGGAAGTGAGAAATTCGTTTTCTTGTTATCCACTAGAGCTGGAGGACTTGGTATCAATCTTGCTACTGCAGATGTTGTGATCCTCTATGATAGTGACTGGAACCCTCAAGTTGACTTGCAAGCTCAGGATCGTGCACATAGGATTGGTCAAAAAAAAGAAGTTCAAGTGTTCCGGTTCTGCACCGAGAATGCTATTGAGGCTAAAGTCATTGAGAGAGCTTACAAGAAGTTGGCACTTGATGCTCTGGTTATTCAGCAAGGGAGATTGGCAGAACAGAAAACTGTTAATAAGGATGAGTTGCTTCAAATGGTGAGATATGGTGCTGAAATGGTGTTTAGTTCTAAAGATAGCACAATTACGGATGAGGATATTGACAGAATCATTGCCAAAGGAGAAGAGGCAACGGCTGAACTTGATGCCAAGATGAAGAAATTTACTGAAGATGCAATACAGTTTAAAATGGATGACAGTGCTGACTTTTATGATTTTGACGATGACAACAAGGATGAGAGCAAGGTGGATTTTAAAAAGATTGTGAGTGAAAATTGGAATGATCCACCAAAAAGAGAGAGAAAGCGCAACTACTCTGAAGTTGAATACTTCAAGCAAACGTTGCGACAAGGTGCTCCAGCTAAACCTAAAGAGCCTAGAATTCCACGCATGCCCCAATTGCATGATTTTCAGTTCTTTAACATTCAGAGGCTGACTGAGCTGTATGAAAAAGAAGTGCGATACCTTATGCAAGCACATCAGAAAACTCAAATGAAAGACACAATTGAGGTTGATGAACCTGAAGAAGTTGGAGATCCCTTAACTGCTGAAGAAGTGGAAGAAAAGGAGCTATTGCTGGAAGAGGGTTTCTCAACATGGAGCAGAAGAGACTTCAATGCCTTCATTAGGGCTTGTGAGAAGTATGGCCGGAACGACATAAAGAGTATTGCCTCTGAGATGGAAGGGAAAACTGAGGAAGAGGTTGAACGATATGCTCAAGTTTTCCAAGTGCGATATAAAGAGCTGAATGATTACGACAGAATCATCAAGAATATTGAGAGAGGGGAAGCAAGAATCTCTAGGAAAGATGAAATCATGAAAGCTATTGGGAAGAAACTGGATCGCTACAGAAACCCGTGGCTGGAACTGAAGATTCAATATGGTCAGAACAAAGGGAAGCTGTACAATGAAGAGTGCGACCGTTTCATGATATGCATGGTCCATAAACTTGGGTATGGAAACTGGGATGAGCTAAAGGCAGCGTTTCGGACATCCCCCTTGTTTAGGTTTGACTGGTTTGTAAAATCCCGCACAACTCAGGAACTTGCAAGGAGATGTGACACACTAATCAGGTTGATTGAGAAAGAGAATCAAGAATTTGATGAGAGAGAGAGGCAAGCCCGAAAAGAGAAGAAGCTTTCAAAGAGTGCAACGCCATCAAAACGACCTTCGGGTAGGCAAGCAAATGAGAGCCCTTCATCTCTTCTGAAGAAACGAAAGCAGCTGTCAATGGATGATTATGGAAAGCGTAGGAAATAAGAAGGCTTGTGTTGAATCCATCACTAAGTAATCAGAAAGATTTATGATCACTTCTAGGTTTGATTCCGAATCGGAGAATTAGTTAGAAGAAGCTCCTTAGAGACAAGGATCTAATATTTTGTACCCGCAAGCATCACTGCATTGTCTCCGACTTCTCTTATTTCTTCAACGTGTATTTTACTCTATTTTGTTTGTAGAAATATTCACCACATTCCTAGTAGTGCGTTTTTAGTAAATCTCAAATCAACTTTTGTGGTCGGATTTGAACAAAACATAACTCTCTCGTCTCTTCTCATGTTGTCACAACTTCCCAATTGAGTGTGACAAATGTAGATTTGTAGATGATAAGAGAAGTCTTTCAAAGATAGATTTTTTTTCTTCTTTTCCTTCTGTCTGTAGACTCGAAACCTGAATCCATACACAATGAGACATTAAATAGTACAGAAAAATTATAAAAATCGACTCGAATCCTCCCTCCCATATTACATATACAACCCATTG
CDS Sequence
Protein Sequence