Gene Details:

• Gene ID: AT5G18560
• Gene Symbol: PUCHI
• Gene Name:
• Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
• TAIR Accession: locus:2182993
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G18560.1

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009010  — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009032  — petal — pétalo (Spanish, exact), 花弁 (Japanese, exact)
• PO:0009062  — gynoecium — ginoecio (Spanish, exact), gynaecium (exact), gynoecia (exact, plural), 雌蕊群 (Japanese, exact), Poaceae gynoecium (narrow), Zea gynoecium (narrow), apocarpous gynoecium (narrow), gynoecium of ear floret (narrow), gynoecium of lower floret of pedicellate spikelet of ear (narrow), gynoecium of lower floret of pedicellate spikelet of tassel (narrow), gynoecium of lower floret of sessile spikelet of ear (narrow), gynoecium of lower floret of sessile spikelet of tassel (narrow), gynoecium of tassel floret (narrow), gynoecium of upper floret of pedicellate spikelet of ear (narrow), gynoecium of upper floret of pedicellate spikelet of tassel (narrow), gynoecium of upper floret of sessile spikelet of ear (narrow), gynoecium of upper floret of sessile spikelet of tassel (narrow), syncarpous gynoecium (narrow), pistil (broad)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0000016  — lateral root primordium — portion of lateral root primordium tissue (exact), primordio de raíz lateral (Spanish, exact), 側根原基 (Japanese, exact)
• PO:0020127  — primary root — raíz primaria (Spanish, exact), tap root (exact), 一次根 (Japanese, exact)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
• PO:0005052  — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)

Gene Ontology:

• GO:0000976  — enables — transcription cis-regulatory region binding
• GO:0009908  — acts upstream of or within — flower development
• GO:0010432  — acts upstream of or within — bract development
• GO:0010582  — acts upstream of or within — floral meristem determinacy
• GO:0010451  — acts upstream of or within — floral meristem growth
• GO:1901332  — acts upstream of or within — negative regulation of lateral root development
• GO:0005515  — enables — protein binding
• GO:0005634  — located in — nucleus
• GO:0006355  — involved in — regulation of DNA-templated transcription
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0010102  — acts upstream of or within — lateral root morphogenesis

Germplasm Phenotype:

• puchi-1  — shorter visible lateral roots at 9 days after germination. The proximal region of each lateral root in the mutant is significantly swollen and often bent. Growth and morphology of the primary root of the puchi mutant is normal.

Function-related keywords:

• root ,  root ,  seed ,  sepal ,  petal ,  gynoecium ,  hypocotyl ,  lateral root primordium ,  primary root ,  plant sperm cell ,  plant callus

Literature:

• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: and shoot-specific genes.   DOI:  10.1111/j.1365-313X.2004.02051.x ;  PMID:  15078338
• A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.   DOI:  10.1101/gad.1476406 ;  PMID:  17182867
• Stamen abscission zone transcriptome profiling reveals new candidates for abscission control: enhanced retention of floral organs in transgenic plants overexpressing Arabidopsis ZINC FINGER PROTEIN2.   DOI:  10.1104/pp.107.110908 ;  PMID:  18192438
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• A role for Arabidopsis PUCHI in floral meristem identity and bract suppression.   DOI:  10.1105/tpc.109.067025 ;  PMID:  19482972
• Enhanced Y1H assays for Arabidopsis.   DOI:  10.1038/nmeth.1750 ;  PMID:  22037706
• Expression of Arabidopsis SHORT INTERNODES/STYLISH family genes in auxin biosynthesis zones of aerial organs is dependent on a GCC box-like regulatory element.   DOI:  10.1104/pp.111.182253 ;  PMID:  21976484
• A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs.   DOI:  10.1016/j.ygeno.2012.05.013 ;  PMID:  22664253
• The AP2/EREBP gene PUCHI Co-Acts with LBD16/ASL18 and LBD18/ASL20 downstream of ARF7 and ARF19 to regulate lateral root development in Arabidopsis.   DOI:  10.1093/pcp/pct081 ;  PMID:  23749813
• Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.   DOI:  10.1093/jxb/eru153 ;  PMID:  24744428
• Promoter-based integration in plant defense regulation.   DOI:  10.1104/pp.114.248716 ;  PMID:  25352272
• An Arabidopsis gene regulatory network for secondary cell wall synthesis.   DOI:  10.1038/nature14099 ;  PMID:  25533953
• Establishment of Expression in the SHORTROOT-SCARECROW Transcriptional Cascade through Opposing Activities of Both Activators and Repressors.   DOI:  10.1016/j.devcel.2016.09.031 ;  PMID:  27923776
• DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.   DOI:  10.1093/jxb/erx208 ;  PMID:  28859377
• Lateral Inhibition by a Peptide Hormone-Receptor Cascade during Arabidopsis Lateral Root Founder Cell Formation.   DOI:  10.1016/j.devcel.2018.11.031 ;  PMID:  30581155
• Endogenous Hypoxia in Lateral Root Primordia Controls Root Architecture by Antagonizing Auxin Signaling in Arabidopsis.   DOI:  10.1016/j.molp.2019.01.007 ;  PMID:  30641154
• Lateral root initiation requires the sequential induction of transcription factors LBD16 and PUCHI in Arabidopsis thaliana.   DOI:  10.1111/nph.16065 ;  PMID:  31310684
• Reactive oxygen species and reactive carbonyl species constitute a feed-forward loop in auxin signaling for lateral root formation.   DOI:  10.1111/tpj.14456 ;  PMID:  31306517
• A phylogenetically conserved APETALA2/ETHYLENE RESPONSE FACTOR, ERF12, regulates Arabidopsis floral development.   DOI:  10.1007/s11103-019-00936-5 ;  PMID:  31807981
• PUCHI Regulates Giant Cell Morphology During Root-Knot Nematode Infection in Arabidopsis thaliana.   DOI:  10.3389/fpls.2021.755610 ;  PMID:  34691131
• Two phylogenetically unrelated peptide-receptor modules jointly regulate lateral root initiation via a partially shared signaling pathway in Arabidopsis thaliana.   DOI:  10.1111/nph.17919 ;  PMID:  34913488
• ROOT MERISTEM GROWTH FACTOR1 (RGF1)-RGF1 INSENSITIVE 1 peptide-receptor pair inhibits lateral root development via the MPK6-PUCHI module in Arabidopsis.   DOI:  10.1093/jxb/erac495 ;  PMID:  36516421
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family.   DOI:  10.1007/s11103-005-1511-0 ;  PMID:  16307362
• Genome-wide analysis of the ERF gene family in Arabidopsis and rice.   DOI:  10.1104/pp.105.073783 ;  PMID:  16407444

Sequences: