Information report for AT5G18270
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0043436 — acts upstream of or within — oxoacid metabolic process
- GO:0006979 — acts upstream of or within — response to oxidative stress
- GO:0098771 — acts upstream of or within — inorganic ion homeostasis
- GO:0010150 — acts upstream of or within — leaf senescence
- GO:0005634 — located in — nucleus
- GO:0031347 — acts upstream of or within — regulation of defense response
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0042742 — acts upstream of or within — defense response to bacterium
- GO:0009888 — acts upstream of or within — tissue development
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0003677 — enables — DNA binding
- GO:0007165 — acts upstream of or within — signal transduction
- GO:0048437 — acts upstream of or within — floral organ development
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0009651 — acts upstream of or within — response to salt stress
- GO:1901615 — acts upstream of or within — organic hydroxy compound metabolic process
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0005737 — located in — cytoplasm
- GO:0009892 — acts upstream of or within — negative regulation of metabolic process
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DOI: 10.1093/dnares/10.6.239 ; PMID: 15029955
- Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures. DOI: 10.1104/pp.104.039370 ; PMID: 15235117
- Microarray analysis of genes that respond to gamma-irradiation in Arabidopsis. DOI: 10.1021/jf0486895 ; PMID: 15713015
- Genome-wide analysis of hydrogen peroxide-regulated gene expression in Arabidopsis reveals a high light-induced transcriptional cluster involved in anthocyanin biosynthesis. DOI: 10.1104/pp.105.065896 ; PMID: 16183842
- Type III effectors orchestrate a complex interplay between transcriptional networks to modify basal defence responses during pathogenesis and resistance. DOI: 10.1111/j.1365-313X.2006.02672.x ; PMID: 16553893
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth. DOI: 10.1105/tpc.106.041319 ; PMID: 17329565
- Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus. DOI: 10.1007/s00425-007-0586-z ; PMID: 17665211
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- A subcellular localization compendium of hydrogen peroxide-induced proteins. DOI: 10.1111/j.1365-3040.2011.02323.x ; PMID: 21443605
- Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. DOI: 10.1104/pp.113.223511 ; PMID: 23858430
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- NAC Transcription Factors ANAC087 and ANAC046 Control Distinct Aspects of Programmed Cell Death in the Arabidopsis Columella and Lateral Root Cap. DOI: 10.1105/tpc.18.00293 ; PMID: 30099383
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- ANAC087 transcription factor positively regulates age-dependent leaf senescence through modulating the expression of multiple target genes in Arabidopsis. DOI: 10.1111/jipb.13434 ; PMID: 36519581
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: F4JWK6
- EMBL: CP002688
- AlphaFoldDB: F4JWK6
- EnsemblPlants: AT5G18270.2
- Gramene: AT5G18270.2
- Orthologous matrix: YNNNEMI
- ExpressionAtlas: AT5G18270
- InterPro: IPR003441, IPR036093
- PANTHER: PTHR31744, PTHR31744:SF92
- SUPFAM: SSF101941
- PROSITE: PS51005
- Gene3D: 2.170.150.80
- OrthoDB: F4JWK6
- SWISS-MODEL: F4JWK6
Sequences
cDNA Sequence
- >AT5G18270.2
ACTTTTATTTCTCTGCTTTAACTGCCCAAAAGATTCTCTCCCAGCTAGCTTTCTCAATTCATTTTTCTTTCTTCATCTTCTTCTTGTGTGATCTCTCTTTCCAAATAAGCTTATCATTCTTACAAAAATATTTCTGGGTTTCTGATATTGTTCTTGTTCTCTTGAATCTTTATTACTTGAAAAACATATAAAGTGATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGATTTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAGGAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAGTGTGAGCCTTGGGATTTGCCAAGTAAGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTCTGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGATACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCAAGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAACCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGATCATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACCGAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAACCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCGGGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTATCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTATCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAGTCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAATTAATCATTTGACTGTGGTGAAAGAGTATATTTGTTGGGATTTAAATCATGTTAGTTAATACATATACATATAGGATTTACTAGAGGCTTAATCCTAGTTAACTATTTTCACTTCATTGATATTATTTAATTAGTTGATTGTTTAATTAGTTTATACTTTATAGTGTGGTTAAAAAAGAAAAGAAAGGATTGTGATAATTTGGGATTTTAGTGCATAAGTTATATCTCAATGTAAACTGTATTTGTATACATATAATTAGTCTTCTCATAGAGTTTTAATTATTAAGATTTACGATATATATATATATATTCTAACGTTGTT - >AT5G18270.1
ACTTTTATTTCTCTGCTTTAACTGCCCAAAAGATTCTCTCCCAGCTAGCTTTCTCAATTCATTTTTCTTTCTTCATCTTCTTCTTGTGTGATCTCTCTTTCCAAATAAGCTTATCATTCTTACAAAAATATTTCTGGGTTTCTGATATTGTTCTTGTTCTCTTGAATCTTTATTACTTGAAAAACATATAAAGTGATGGCGGTTGTGGTTGAAGAAGGTGTGGTGTTGAATCATGGAGGTGAAGAGCTTGTGGATTTGCCACCTGGTTTCAGGTTTCATCCAACAGACGAAGAGATCATAACATGTTACCTTAAGGAGAAGGTTTTAAACAGCCGATTCACGGCTGTGGCCATGGGAGAAGCTGATCTCAACAAGTGTGAGCCTTGGGATTTGCCAAGTAAGGCAAAGATGGGGGAGAAAGAGTTCTACTTCTTCTGTCAAAGGGACAGGAAGTATCCGACTGGGATGAGGACGAACCGTGCGACGGAGTCAGGATACTGGAAAGCCACCGGGAAGGATAAGGAGATCTTCAAAGGCAAAGGTTGTCTCGTTGGGATGAAGAAAACACTTGTGTTTTATAGAGGAAGAGCTCCAAAAGGTGAAAAGACTAATTGGGTCATGCATGAATATCGTCTTGAAGGCAAATATTCGTATTACAATCTCCCAAAATCTGCAAGGGACGAATGGGTCGTGTGTAGGGTTTTTCACAAGAACAATCCTTCTACCACAACCCAACCAATGACGAGAATACCCGTTGAAGATTTCACAAGGATGGATTCTCTAGAGAACATTGATCATCTCCTAGACTTCTCATCTCTTCCTCCTCTCATAGACCCGAGTTTCATGAGTCAAACCGAACAACCAAACTTCAAACCCATCAACCCTCCAACTTACGATATCTCATCACCAATCCAACCCCATCATTTCAATTCTTACCAATCAATCTTTAACCACCAGGTTTTTGGTTCTGCTTCGGGCTCTACGTACAACAACAACAACGAGATGATCAAGATGGAGCAATCACTTGTTAGTGTATCTCAAGAAACATGCCTAAGCTCAGATGTGAACGCGAACATGACTACAACCACGGAGGTATCTTCGGGTCCTGTAATGAAACAAGAAATGGGGATGATGGGAATGGTGAATGGTAGCAAGTCGTATGAAGATCTATGTGACTTGAGGGGGGACTTGTGGGACTTCTAATTAATCATTTGACTGTGGTGAAAGAGTATATTTGTTGGGATTTAAATCATGTTAGTTAATACATATACATATAGGATTTACTAGAGGCTTAATCCTAGTTAACTATTTTCACTTCATTGATATTATTTAATTAGTTGATTGTTTAATTAGTTTATACTTTATAGTGTGGTTAAAAAAGAAAAGAAAGGATTGTGATAATTTGGGATTTTAGTGCATAAGTTATATCTCAATGTAAACTGTATTTGTATACATATAATTAGTCTTCTCATAGAGTTTTAATTATTAAGATTTACGATATATATATATATATTCTAACGTTGTT
CDS Sequence
Protein Sequence