Information report for AT5G17880
Gene Details
|
|
Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- csa1-1 — Shade avoidance phenotype (long stem) under high red:far-red ratios (i.e. in the absence of a shade signal).
Functional Keywords
Literature and News
- Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis. DOI: 10.1105/tpc.009308 ; PMID: 12671079
- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4. DOI: 10.1111/j.1365-313X.2006.02806.x ; PMID: 16813576
- Global expression analysis of nucleotide binding site-leucine rich repeat-encoding and related genes in Arabidopsis. DOI: 10.1186/1471-2229-7-56 ; PMID: 17956627
- A survey of dominant mutations in Arabidopsis thaliana. DOI: 10.1016/j.tplants.2012.08.006 ; PMID: 22995285
- Diverse NLR immune receptors activate defence via the RPW8-NLR NRG1. DOI: 10.1111/nph.15659 ; PMID: 30582759
- The Arabidopsis TIR-NBS-LRR protein CSA1 guards BAK1-BIR3 homeostasis and and effector-induced immune responses. DOI: 10.1016/j.chom.2022.11.001 ; PMID: 36446350
- The integrated LIM-peptidase domain of the CSA1-CHS3/DAR4 paired immune receptor detects changes in DA1 peptidase inhibitors in Arabidopsis. DOI: 10.1016/j.chom.2023.04.009 ; PMID: 37167970
Gene Resources
- UniProt: A0A1P8BFL2
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BFL2
- EnsemblPlants: AT5G17880.2
- Gramene: AT5G17880.2
- Orthologous matrix: FINPVEG
- ExpressionAtlas: AT5G17880
- InterPro: IPR000157, IPR002182, IPR011713
- PANTHER: PTHR11017, PTHR11017:SF424
- SUPFAM: SSF52058, SSF52200, SSF52540
- PROSITE: PS50104
- Gene3D: 3.40.50.10140, 3.40.50.300, 3.80.10.10
- SWISS-MODEL: A0A1P8BFL2
Sequences
cDNA Sequence
- >AT5G17880.2
TAGCATACTACCATCCATAATAGTTACTTGTAATACCATGAACTATTACTTTGTTATCAATATTTCATTTAAAATCTTTTTTGTTCTTTTGATACAGAAAAAATTAGTTATTGAATTTGAAAGTTCCATTGACTTATCCTTTGAGATAGTCCTAAAGTCGATGGCAGAACAGAGGCTAATTTCGAGTCTTTCAGTTTTGAGAGCACTAAAGCCAGATAGAAATGACAAGCTCCTCCTCCTGGGTGAAAACGGACGGTGAGACACCCCAAGATCAAGTGTTCATTAATTTCCGTGGAGTCGAACTGCGCAAGAACTTCGTCAGTCATCTGGAGAAGGGCTTAAAAAGGAAAGGGATCAATGCCTTCATAGACACAGATGAAGAGATGGGCCAAGAGTTGAGTGTTCTGCTCGAAAGAATAGAAGGTTCGAGGATCGCGCTAGCCATTTTCTCTCCAAGGTACACGGAGTCAAAATGGTGTTTGAAGGAGCTTGCGAAGATGAAAGAAAGAACGGAACAAAAGGAGCTCGTGGTGATTCCAATCTTCTACAAGGTACAGCCCGTCACTGTTAAAGAATTGAAGGGAGACTTCGGGGATAAGTTCAGGGAGCTGGTGAAGTCTACTGACAAGAAGACGAAGAAAGAATGGAAGGAAGCTTTACAATATGTTCCATTTTTAACCGGCATCGTGTTGGATGAGAAAAGCGATGAGGACGAAGTCATCAATATAATTATCCGAAAGGTTAAAGAAATACTAAATAGACGTTCAGAGGGTCCTCCTTCTAAATGTTCTGCACTACCGCCCCAAAGACACCAGAAACGTCATGAAACCTTTTGGGGAATCGAGCTCCGAATTAAGCAACTAGAAGAAAAGTTACGTTTTGGGTCGGACGAAACAACTCGTACCATCGGTGTTGTTGGGATGCCCGGTATAGGTAAAACCACTCTCGCTACGATGCTATATGAGAAGTGGAATGATAGATTCCTGAGACACGTGTTAATCCGTGATATCCATGAAGCTTCAGAGGAAGACGGGTTAAATTACTTGGCCACGAAATTCTTGCAAGGTTTATTGAAAGTTGAGAATGCCAACATCGAGTCCGTACAAGCTGCTCATGAAGCTTACAAAGATCAGTTACTCGAGACCAAAGTCCTTGTTATTCTTGACAATGTCAGTAACAAGGACCAAGTTGATGCTCTTCTTGGCGAACGCAACTGGATTAAGAAAGGAAGCAAGATTCTCATTACTACAAGCGACAAGTCATTGATGATACAAAGTTTGGTCAATGATACTTACGAAGTCCCTCCATTAAGCGACAAAGATGCCATAAAACATTTTATACGTTACGCATTTGATGGTAACGAAGGAGCTGCTCCCGGCCCCGGGCAAGGAAATTTCCCCAAGTTGTCGAAAGATTTCGTGCATTATACTAAAGGAAATCCACTAGCTCTCCAGATGTTGGGTAAGGAGCTTTTGGGGAAAGATGAGAGTCACTGGGGCTTAAAACTAAATGCATTGGATCAACACCATAACAGTCCACCTGGACAAAGCATTTGCAAGATGCTTCAAAGGGTCTGGGAAGGGAGTTATAAAGCACTGAGTCAAAAAGAAAAAGATGCACTTCTTGACATAGCTTGCTTCAGGTCGCAAGATGAGAATTACGTAGCGAGTTTATTGGATTCAGATGGCCCTAGTAATATATTGGAAGATCTCGTGAACAAGTTCATGATTAATATTTATGCTGGCAAAGTAGATATGCATGATACATTGTATATGCTCTCCAAGGAACTTGGTCGAGAAGCTACTGCTACAGATAGAAAGGGGCGGCATAGGTTGTGGCACCATCACACCATAATTGCTGTGCTGGACAAAAACAAGGGAGGTTCTAATATCAGGTCTATTTTCCTTGACTTGTCTGATATTACAAGAAAATGGTGCTTCTATCGCCATGCTTTTGCCATGATGAGGGATCTAAGATATCTCAAAATCTACAGCACTCATTGTCCTCAAGAATGTGAAAGTGACATTAAATTAAACTTCCCCGAAGGACTCCTGCTACCGTTGAATGAGGTGCGATATCTCCACTGGCTGAAATTCCCGTTAAAAGAAGTTCCACAAGATTTCAACCCGGGTAATTTGGTTGACCTTAAGCTTCCTTATAGCGAGATTGAACGAGTTTGGGAAGATAACAAGGATGCACCAAAATTAAAATGGGTAAACTTAAATCACTCAAAGAAGTTGAACACTTTGGCAGGGTTAGGAAAAGCTCAAAATCTTCAAGAGCTAAATCTTGAAGGTTGCACGGCATTGAAAGAGATGCATGTGGATATGGAAAATATGAAGTTTCTTGTTTTCTTGAACCTGAGAGGATGCACAAGTCTCAAGTCTCTTCCAGAGATTCAGTTGATCTCTTTGAAAACTCTCATCCTCAGTGGCTGCTCAAAATTTAAAACCTTTCAGGTTATTTCAGATAAGCTGGAAGCACTATACTTGGATGGAACTGCAATAAAGGAACTTCCTTGTGACATTGGGAGACTCCAAAGACTTGTTATGTTGAACATGAAAGGCTGCAAGAAGCTGAAAAGGCTCCCTGACAGTCTTGGTCAGCTGAAAGCTCTTGAAGAACTTATCCTCTCTGGTTGTTCAAAGCTCAATGAGTTTCCAGAAACTTGGGGAAACATGAGCCGCTTAGAGATCTTGCTTCTGGATGAGACAGCTATAAAAGATATGCCGAAGATACTCTCCGTGCGTCGTTTATGCTTAAACAAGAATGAAAAGATCAGCCGCCTTCCAGATCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAGAATCTTACACATGTTCCACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACTGAAGACAGTTGCAAAACCGCTGGTATGTTCTATACCGATGAAGCATGTCAATTCCTCGTTCATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGTATATGCTGAAAGGAAGTGTCATTTGCTTGCTAGTGCGCTTAAACGATGCGATGAGAGTTGTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCTGGATGTGAAATGCCTTCATGGTTTAGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCTCACTGGAATCACAATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATTCAAGAACTGTAAAAGTCATGCCAACTTGATAGTCAAGTTCTCTTGTGAGCAAAATAACGGAGAGGGCTCTTCCAGCAGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAATCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGACTTCATAAAACTTGTTAAAGGCCAAGGTGGTCCTAAATGTGCTCCGACCAAAGCATCCCTTGAGTTTAGTGTGAGAACTGGTACTGGTGGGGAAGCTACGCTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACCTGAAGAGAACAGAGTTCCATCCCCAAGGAATGATGATGTAAAAGGTAAAGTAAAAATCAACAAAACTCCAAGTGCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTAATGAATCTCCAAAGGGCCAGTGGCAGACTTACATTGAAAACTCTAGCACTAACATCCCAAGTGAAGCTCATTCTTCCCAAAAAACTGGTTTTGGTTCCACTCTTTTGTGTTAAACTCATAGATTGCCTCTGTTTTCACACTATTTATTCTTTCGAACTCTCTGTATTTGTATCTTCATTGTGTATTTCTCCAGATGATTTGACTTAAGCTTTTAAGGTGTCAGGGTTTAATGGGTTCAACGGGATGTACTCTGTATGCGTGCTTTATGAAATGTATAGCCATTGATGTTGATCTTGGAATTGACTCCATAAACATGCAATGCAAG - >AT5G17880.1
TAGCATACTACCATCCATAATAGTTACTTGTAATACCATGAACTATTACTTTGTTATCAATATTTCATTTAAAATCTTTTTTGTTCTTTTGATACAGAAAAAATTAGTTATTGAATTTGAAAGTTCCATTGACTTATCCTTTGAGATAGTCCTAAAGTCGATGGCAGAACAGAGGCTAATTTCGAGTCTTTCAGTTTTGAGAGCACTAAAGCCAGATAGAAATGACAAGCTCCTCCTCCTGGGTGAAAACGGACGGTGAGACACCCCAAGATCAAGTGTTCATTAATTTCCGTGGAGTCGAACTGCGCAAGAACTTCGTCAGTCATCTGGAGAAGGGCTTAAAAAGGAAAGGGATCAATGCCTTCATAGACACAGATGAAGAGATGGGCCAAGAGTTGAGTGTTCTGCTCGAAAGAATAGAAGGTTCGAGGATCGCGCTAGCCATTTTCTCTCCAAGGTACACGGAGTCAAAATGGTGTTTGAAGGAGCTTGCGAAGATGAAAGAAAGAACGGAACAAAAGGAGCTCGTGGTGATTCCAATCTTCTACAAGGTACAGCCCGTCACTGTTAAAGAATTGAAGGGAGACTTCGGGGATAAGTTCAGGGAGCTGGTGAAGTCTACTGACAAGAAGACGAAGAAAGAATGGAAGGAAGCTTTACAATATGTTCCATTTTTAACCGGCATCGTGTTGGATGAGAAAAGCGATGAGGACGAAGTCATCAATATAATTATCCGAAAGGTTAAAGAAATACTAAATAGACGTTCAGAGGGTCCTCCTTCTAAATGTTCTGCACTACCGCCCCAAAGACACCAGAAACGTCATGAAACCTTTTGGGGAATCGAGCTCCGAATTAAGCAACTAGAAGAAAAGTTACGTTTTGGGTCGGACGAAACAACTCGTACCATCGGTGTTGTTGGGATGCCCGGTATAGGTAAAACCACTCTCGCTACGATGCTATATGAGAAGTGGAATGATAGATTCCTGAGACACGTGTTAATCCGTGATATCCATGAAGCTTCAGAGGAAGACGGGTTAAATTACTTGGCCACGAAATTCTTGCAAGGTTTATTGAAAGTTGAGAATGCCAACATCGAGTCCGTACAAGCTGCTCATGAAGCTTACAAAGATCAGTTACTCGAGACCAAAGTCCTTGTTATTCTTGACAATGTCAGTAACAAGGACCAAGTTGATGCTCTTCTTGGCGAACGCAACTGGATTAAGAAAGGAAGCAAGATTCTCATTACTACAAGCGACAAGTCATTGATGATACAAAGTTTGGTCAATGATACTTACGAAGTCCCTCCATTAAGCGACAAAGATGCCATAAAACATTTTATACGTTACGCATTTGATGGTAACGAAGGAGCTGCTCCCGGCCCCGGGCAAGGAAATTTCCCCAAGTTGTCGAAAGATTTCGTGCATTATACTAAAGGAAATCCACTAGCTCTCCAGATGTTGGGTAAGGAGCTTTTGGGGAAAGATGAGAGTCACTGGGGCTTAAAACTAAATGCATTGGATCAACACCATAACAGTCCACCTGGACAAAGCATTTGCAAGATGCTTCAAAGGGTCTGGGAAGGGAGTTATAAAGCACTGAGTCAAAAAGAAAAAGATGCACTTCTTGACATAGCTTGCTTCAGGTCGCAAGATGAGAATTACGTAGCGAGTTTATTGGATTCAGATGGCCCTAGTAATATATTGGAAGATCTCGTGAACAAGTTCATGATTAATATTTATGCTGGCAAAGTAGATATGCATGATACATTGTATATGCTCTCCAAGGAACTTGGTCGAGAAGCTACTGCTACAGATAGAAAGGGGCGGCATAGGTTGTGGCACCATCACACCATAATTGCTGTGCTGGACAAAAACAAGGGAGGTTCTAATATCAGGTCTATTTTCCTTGACTTGTCTGATATTACAAGAAAATGGTGCTTCTATCGCCATGCTTTTGCCATGATGAGGGATCTAAGATATCTCAAAATCTACAGCACTCATTGTCCTCAAGAATGTGAAAGTGACATTAAATTAAACTTCCCCGAAGGACTCCTGCTACCGTTGAATGAGGTGCGATATCTCCACTGGCTGAAATTCCCGTTAAAAGAAGTTCCACAAGATTTCAACCCGGGTAATTTGGTTGACCTTAAGCTTCCTTATAGCGAGATTGAACGAGTTTGGGAAGATAACAAGGATGCACCAAAATTAAAATGGGTAAACTTAAATCACTCAAAGAAGTTGAACACTTTGGCAGGGTTAGGAAAAGCTCAAAATCTTCAAGAGCTAAATCTTGAAGGTTGCACGGCATTGAAAGAGATGCATGTGGATATGGAAAATATGAAGTTTCTTGTTTTCTTGAACCTGAGAGGATGCACAAGTCTCAAGTCTCTTCCAGAGATTCAGTTGATCTCTTTGAAAACTCTCATCCTCAGTGGCTGCTCAAAATTTAAAACCTTTCAGGTTATTTCAGATAAGCTGGAAGCACTATACTTGGATGGAACTGCAATAAAGGAACTTCCTTGTGACATTGGGAGACTCCAAAGACTTGTTATGTTGAACATGAAAGGCTGCAAGAAGCTGAAAAGGCTCCCTGACAGTCTTGGTCAGCTGAAAGCTCTTGAAGAACTTATCCTCTCTGGTTGTTCAAAGCTCAATGAGTTTCCAGAAACTTGGGGAAACATGAGCCGCTTAGAGATCTTGCTTCTGGATGAGACAGCTATAAAAGATATGCCGAAGATACTCTCCGTGCGTCGTTTATGCTTAAACAAGAATGAAAAGATCAGCCGCCTTCCAGATCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAGAATCTTACACATGTTCCACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACTGAAGACAGTTGCAAAACCGCTGGTATGTTCTATACCGATGAAGCATGTCAATTCCTCGTTCATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGTATATGCTGAAAGGAAGTGTCATTTGCTTGCTAGTGCGCTTAAACGATGCGATGAGAGTTGTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCTGGATGTGAAATGCCTTCATGGTTTAGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCTCACTGGAATCACAATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATTCAAGAACTGTAAAAGTCATGCCAACTTGATAGTCAAGTTCTCTTGTGAGCAAAATAACGGAGAGGGCTCTTCCAGCAGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAATCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGACTTCATAAAACTTGTTAAAGGCCAAGGTGGTCCTAAATGTGCTCCGACCAAAGCATCCCTTGAGTTTAGTGTGAGAACTGGTACTGGTGGGGAAGCTACGCTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACCTGAAGAGAACAGAGTTCCATCCCCAAGGAATGATGATGTAAAAGGTAAAGTAAAAATCAACAAAACTCCAAGTGCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTAATGAATCTCCAAAGGGCCAGTGGCAGACTTACATTGAAAACTCTAGCACTAACATCCCAAGTGAAGCTCATTCTTCCCAAAAAACTGGTTTTGGTTCCACTCTTTTGTGTTAAACTCATAGATTGCCTCTGTTTTCACACTATTTATTCTTTCGAACTCTCTGTATTTGTATCTTCATTGTGTATTTCTCCAGATGATTTGACTTAAGCTTTTAAGGTGTCAGGGTTTAATGGGTTCAACGGGATGTACTCTGTATGCGTGCTTTATGAAATGTATAGCCATTGATGTTGATCTTGGAATTGACTCCATAAACATGCAATGCAAG
CDS Sequence
Protein Sequence