Gene Details:
- Gene ID: AT5G17380
- Gene Symbol: AtHPCL, HPCL
- Gene Name: 2-hydroxy-phytanoyl-CoA lyase
- Description: Thiamine pyrophosphate dependent pyruvate decarboxylase family protein;(source:Araport11)
- TAIR Accession: locus:2167205
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Gene Ontology:
- GO:0033306 — involved in — phytol metabolic process
- GO:0009536 — located in — plastid
- GO:0005777 — is active in — peroxisome
- GO:0001561 — involved in — fatty acid alpha-oxidation
- GO:0000287 — enables — magnesium ion binding
- GO:0009507 — located in — chloroplast
- GO:0005829 — located in — cytosol
- GO:0030976 — enables — thiamine pyrophosphate binding
- GO:0005777 — located in — peroxisome
Function-related keywords:
Literature:
- Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. DOI: 10.1101/gr.2544504 ; PMID: 15489341
- Transcript profiling in Arabidopsis reveals complex responses to global inhibition of DNA methylation and histone deacetylation. DOI: 10.1074/jbc.M409053200 ; PMID: 15516340
- Expression profiling of auxin-treated Arabidopsis roots: toward a molecular analysis of lateral root emergence. DOI: 10.1093/pcp/pcj043 ; PMID: 16621846
- Proteomic analysis of seed dormancy in Arabidopsis. DOI: 10.1104/pp.106.087452 ; PMID: 17028149
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- 2-Hydroxy-phytanoyl-CoA lyase (AtHPCL) is involved in phytol metabolism in Arabidopsis. DOI: 10.1111/tpj.15632 ; PMID: 34902195
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Sequences:
cDNA Sequence
- >AT5G17380.1
TACGTGTACAAGTTTGTAGATAAAATTTTCAGAGAACACACAAAATGCAAATAAAGAAGTCAATAATAGGCTAATAGTAGCATTAATGCAAAACACGTAATCACAGTAAGAGTAAAACACAAATACAAAAGGCTATATAAAGAAACTAAAGCAAGTAGAAGAAACTGAAACTTTGAGCAAATCCAAGAGAACATGGCGGATAAATCAGAAACCACTCCACCGTCAATTGATGGCAACGTTCTCGTGGCCAAGTCACTCTCTCATCTCGGCGTAACCCACATGTTCGGCGTCGTTGGAATCCCCGTCACGTCTCTAGCTAGCCGAGCTATGGCTTTAGGTATACGTTTCATCGCCTTCCACAACGAACAATCCGCTGGTTACGCCGCTTCAGCTTACGGTTACCTCACGGGTAAACCGGGTATCCTTTTAACGGTTTCGGGTCCGGGTTGTGTTCATGGGCTCGCGGGTCTTTCCAACGCTTGGGTTAATACATGGCCGATGGTGATGATCTCTGGTTCTTGTGATCAGAGAGATGTTGGTCGTGGAGATTTCCAGGAGCTTGATCAGATCGAAGCGGTTAAAGCTTTCTCGAAATTATCAGAGAAAGCGAAAGATGTTCGTGAAATCCCTGATTGTGTTTCTAGGGTTTTGGATCGAGCTGTTTCGGGTCGACCCGGTGGGTGTTATCTGGATATTCCGACTGATGTGTTGCGTCAGAAGATATCGGAATCGGAAGCTGATAAATTGGTGGATGAGGTTGAGAGATCACGGAAGGAAGAACCGATTCGTGGATCTCTGAGATCGGAGATTGAATCGGCGGTTTCGTTGCTGAGGAAAGCTGAGAGGCCGTTGATTGTGTTTGGTAAAGGAGCTGCGTATTCGAGAGCAGAAGATGAGCTGAAGAAGCTTGTTGAAATTACTGGAATACCCTTTTTACCAACTCCGATGGGTAAAGGTTTGTTACCGGACACACACGAGTTCTCGGCGACTGCGGCGAGGTCTCTTGCTATTGGGAAATGTGATGTCGCGTTGGTGGTTGGAGCTAGGCTTAACTGGCTTCTTCATTTCGGAGAGTCGCCTAAATGGGATAAAGATGTAAAATTTATATTGGTGGATGTCTCTGAGGAAGAGATTGAGCTAAGGAAACCTCATTTGGGGATTGTTGGAGATGCTAAAACTGTGATTGGATTGTTGAATAGAGAGATCAAAGACGATCCTTTTTGTTTAGGGAAGTCTAATTCATGGGTGGAATCGATTTCGAAGAAGGCGAAAGAGAATGGTGAGAAGATGGAGATACAGCTTGCTAAAGATGTGGTTCCTTTCAATTTCTTGACTCCTATGAGGATAATCAGAGACGCTATTTTGGCTGTGGAAGGACCGAGTCCTGTTGTGGTATCGGAAGGAGCTAATACAATGGATGTAGGAAGATCTGTTTTGGTTCAGAAAGAGCCAAGGACAAGGCTTGATGCAGGAACTTGGGGAACTATGGGTGTTGGTTTAGGTTATTGTATTGCTGCTGCTGTTGCTTCTCCTGATCGGCTTGTTGTCGCTGTTGAAGGAGACTCTGGTTTTGGCTTCAGCGCCATGGAAGTCGAGACATTGGTTCGATACAATCTTGCTGTGGTGATTATAGTCTTCAACAATGGTGGTGTCTACGGCGGTGATCGAAGGGGACCTGAAGAAATCTCCGGTCCTCATAAAGAAGATCCAGCACCAACATCATTTGTTCCTAATGCAGGCTACCACAAGCTCATTGAAGCCTTTGGAGGCAAAGGTTATATTGTGGAAACACCCGATGAGCTTAAATCCGCTCTCGCTGAGTCGTTCGCCGCAAGAAAACCCGCGGTGGTAAATGTTATTATTGATCCTTTTGCTGGTGCTGAGAGTGGGAGATTACAGCACAAGAACTAAAAAGCTTTGTGGAGAGTCCCTTTAAATAATGTTGAAGTTGTTTGTTGTGAACAAAAAGGATATACGTTTTAGTTTTCTGTTTTTCACTATTGTAAACCGGATCATAAACCGGTCCATTTTAAACCATAATTGAATAAAAACACGTTTCCGGTTCAATTCTT
CDS Sequence
Protein Sequence