Information report for AT5G17300
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020003 — plant ovule — óvulo vegetal (Spanish, exact), 胚珠 (Japanese, exact), Poaceae ovule (narrow), Zea ovule (narrow)
- GO:0005515 — enables — protein binding
- GO:0009851 — acts upstream of or within — auxin biosynthetic process
- GO:0010600 — acts upstream of or within — regulation of auxin biosynthetic process
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0009734 — acts upstream of or within — auxin-activated signaling pathway
- GO:0007623 — acts upstream of or within — circadian rhythm
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- GO:0003677 — enables — DNA binding
- SALK_025754C — Seedlings screened in bulk via high throughput methods for responses to various stressors. Results are in comparison to Col-0.heat:decreased,cold:decreased,oxidative stress:decreased,osmotic stress:no change,salt stress:no change,ABA:no change,hypoxia:no change.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- LHY and CCA1 are partially redundant genes required to maintain circadian rhythms in Arabidopsis. DOI: 10.1016/s1534-5807(02)00170-3 ; PMID: 12015970
- Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. DOI: 10.1093/aob/mci217 ; PMID: 16081496
- Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. DOI: 10.1104/pp.105.070110 ; PMID: 16244138
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- Global transcript levels respond to small changes of the carbon status during progressive exhaustion of carbohydrates in Arabidopsis rosettes. DOI: 10.1104/pp.107.115592 ; PMID: 18305208
- Expression-based discovery of candidate ovule development regulators through transcriptional profiling of ovule mutants. DOI: 10.1186/1471-2229-9-29 ; PMID: 19291320
- REVEILLE1, a Myb-like transcription factor, integrates the circadian clock and auxin pathways. DOI: 10.1073/pnas.0813035106 ; PMID: 19805390
- Transcriptional dynamics of two seed compartments with opposing roles in Arabidopsis seed germination. DOI: 10.1104/pp.113.223511 ; PMID: 23858430
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. DOI: 10.1038/ncomms12377 ; PMID: 27506149
- REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. DOI: 10.1007/s11120-015-0146-5 ; PMID: 25910753
- Interplay between REVEILLE1 and RGA-LIKE2 regulates seed dormancy and germination in Arabidopsis. DOI: 10.1111/nph.16236 ; PMID: 31580487
- PIF1 and RVE1 form a transcriptional feedback loop to control light-mediated seed germination in Arabidopsis. DOI: 10.1111/jipb.12938 ; PMID: 32277734
- Red Light and the Dormancy-Germination Decision in Arabidopsis Seeds. DOI: 10.1007/s11538-020-00849-1 ; PMID: 33452929
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A1P8BGA9
- EMBL: CP002688
- AlphaFoldDB: A0A1P8BGA9
- EnsemblPlants: AT5G17300.2
- Gramene: AT5G17300.2
- Orthologous matrix: ATEMQNE
- ExpressionAtlas: AT5G17300
- PANTHER: PTHR12802, PTHR12802:SF155
Sequences
cDNA Sequence
- >AT5G17300.2
TTCCCTTCTTCCTCCTTCACAGACCCCAAACTCTTCTCTTCTTCTTCTTTCTCTCTGTTTTCTTCTTCTTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGGCTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTATTTGCGGCAAGATTTCCAGCGAGAGTTTTTTTCTCTTTTCCTTTATCGAACATAAGAAATCTCTGGTTTGCTGGAAGTTTTTTTTCCGGAAGGTGGAAGCTTAGATTGGTTCTGATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTATAGAAACAGACGGAGAACAGAGGAAATTAAGCTGATTTTTTCAAGTCTAGATTCGCGAATTTATCTTGGTGTTTCCTTTTCTGTGTTCCACACCTTTCGAGTTTTTTTTTGTTTTCCTCCGCCGAGATCTTAATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTACCAACGCTTCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGTTTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGAGCTTGGAGACGAATAGAAGGTAAATTAATGATTTAGTAATATCTCTTGCTACTGAGTTATGGCCTTACCTGGACCCTCAAAAATATATGTTTGTTTCACTAACAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGTAAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTTTGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGAAACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCCTAAAGAAGAGACTTTAAATTTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAATTTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTGCAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTATACAGTTAAATCTAATGATTATGAGATCTTTCTTAA - >AT5G17300.1
TTCCCTTCTTCCTCCTTCACAGACCCCAAACTCTTCTCTTCTTCTTCTTTCTCTCTGTTTTCTTCTTCTTCCGCCGAATCAGAAAGCTTGTCTTTTTCTTTACTCCGGCTACCAAAACTTCTCGGAGTTTCTCTGAGAGTTTCATTTCCGACCTTCTTCTTATCCTTATTTGCGGCAAGATTTCCAGCGAGAGTTTTTTTCTCTTTTCCTTTATCGAACATAAGAAATCTCTGGTTTGCTGGAAGTTTTTTTTCCGGAAGGTGGAAGCTTAGATTGGTTCTGATTTCAGAAGCAAATCGTTTGTTGTTGCCTAAGTAAACCGAATCAATTTATGGGATCTATAGAAACAGACGGAGAACAGAGGAAATTAAGCTGATTTTTTCAAGTCTAGATTCGCGAATTTATCTTGGTGTTTCCTTTTCTGTGTTCCACACCTTTCGAGTTTTTTTTTGTTTTCCTCCGCCGAGATCTTAATCCGGGAAGTTATGGCGTCGTCTCCGTTGACTGCAAATGTTCAGGGTACCAACGCTTCTTTGAGGAATAGAGATGAAGAAACTGCAGACAAGCAGATACAATTCAATGACCAAAGTTTTGGGGGAAATGACTATGCACCCAAGGTACGGAAGCCATACACGATAACAAAAGAGAGAGAGAGATGGACAGATGAAGAGCACAAGAAGTTTGTTGAAGCCTTGAAATTATACGGGCGAGCTTGGAGACGAATAGAAGGTAAATTAATGATTTAGTAATATCTCTTGCTACTGAGTTATGGCCTTACCTGGACCCTCAAAAATATATGTTTGTTTCACTAACAGAACATGTGGGCTCAAAGACCGCAGTTCAGATTCGAAGCCATGCTCAGAAGTTTTTCTCTAAGGTTGCTCGAGAAGCAACTGGAGGTGATGGGAGCTCAGTAGAGCCGATTGTAATACCTCCTCCTCGTCCCAAGAGAAAGCCAGCGCATCCGTACCCTCGTAAGTTTGGGAACGAGGCAGATCAAACAAGTAGATCGGTTTCTCCCTCAGAACGTGATACTCAATCTCCAACCTCTGTGTTGTCCACTGTTGGATCAGAAGCATTGTGTTCCCTTGATTCGAGTTCACCCAATCGAAGCTTGTCCCCAGTTTCTTCTGCATCACCACCAGCTGCTCTTACAACCACTGCAAATGCACCTGAAGAGCTTGAGACTCTGAAGCTGGAGTTGTTTCCTAGTGAGAGACTCTTAAACAGGGAGAGCTCGATCAAGGAACCAACGAAGCAAAGTCTTAAACTCTTTGGGAAGACAGTTTTGGTATCTGATTCAGGCATGTCCTCTTCTCTAACAACTTCAACATATTGTAAATCCCCAATTCAGCCATTACCACGGAAACTCTCATCATCCAAGACACTACCCATAATAAGAAACTCACAAGAAGAACTCTTGAGCTGCTGGATACAAGTCCCTCTTAAGCAAGAAGATGTGGAAAATAGATGTTTGGATTCAGGAAAGGCTGTCCAAAACGAAGGATCATCGACTGGATCAAACACTGGTTCGGTGGATGATACGGGACACACGGAAAAGACCACAGAACCCGAAACAATGCTATGTCAATGGGAGTTTAAACCAAGTGAGAGGTCTGCATTTTCTGAGCTCAGAAGAACAAACTCCGAGTCAAATTCAAGAGGATTTGGTCCATACAAGAAGAGAAAGATGGTAACAGAAGAAGAAGAGCATGAGATTCATCTCCACTTATAACACATTTTCTTACGTACCCTAAAGAAGAGACTTTAAATTTACTATTCATTCGACTTTCTAAGTTTTCATCAATGTAATTTTTGTTGTTGTTTCATTGTTTTCTCTTGAGGTGTTTGTTCTCTAGGCTAAAATTTTCTGCAAAAGTTTGTAACTGTAAAACTCGTGTACAATTTATACAGTTAAATCTAATGATTATGAGATCTTTCTTAA
CDS Sequence
Protein Sequence