Information report for AT5G16820
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- hsf1/3 — Reduced HSP production but no change in thermotolerance.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- and heat shock transcription factor-dependent expression and activity of ascorbate peroxidase in Arabidopsis. DOI: 10.1104/pp.001362 ; PMID: 12068123
- Syntenic relationships between Medicago truncatula and Arabidopsis reveal extensive divergence of genome organization. DOI: 10.1104/pp.102.016436 ; PMID: 12644654
- Galactinol synthase1. A novel heat shock factor target gene responsible for heat-induced synthesis of raffinose family oligosaccharides in Arabidopsis. DOI: 10.1104/pp.104.042606 ; PMID: 15466240
- Identification of novel heat shock factor-dependent genes and biochemical pathways in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2004.02272.x ; PMID: 15610345
- The heat-inducible transcription factor HsfA2 enhances anoxia tolerance in Arabidopsis. DOI: 10.1104/pp.109.149815 ; PMID: 20089772
- Functional characterization of AtHsp90.3 in Saccharomyces cerevisiae and Arabidopsis thaliana under heat stress. DOI: 10.1007/s10529-010-0240-x ; PMID: 20229063
- Cytosol-localized heat shock factor-binding protein, AtHSBP, functions as a negative regulator of heat shock response by translocation to the nucleus and is required for seed development in Arabidopsis. DOI: 10.1104/pp.109.151225 ; PMID: 20388662
- Promoter specificity and interactions between early and late Arabidopsis heat shock factors. DOI: 10.1007/s11103-010-9643-2 ; PMID: 20458611
- The role of class A1 heat shock factors (HSFA1s) in response to heat and other stresses in Arabidopsis. DOI: 10.1111/j.1365-3040.2011.02278.x ; PMID: 21241330
- Arabidopsis HsfA1 transcription factors function as the main positive regulators in heat shock-responsive gene expression. DOI: 10.1007/s00438-011-0647-7 ; PMID: 21931939
- Acquired thermotolerance independent of heat shock factor A1 (HsfA1), the master regulator of the heat stress response. DOI: 10.4161/psb.19803 ; PMID: 22516818
- Heat stress induction of miR398 triggers a regulatory loop that is critical for thermotolerance in Arabidopsis. DOI: 10.1111/tpj.12169 ; PMID: 23480361
- The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis. DOI: 10.1105/tpc.113.118927 ; PMID: 24415771
- Arabidopsis HSP70-16 is required for flower opening under normal or mild heat stress temperatures. DOI: 10.1111/pce.13480 ; PMID: 30426513
- HSFA1d regulates the kinetics of heat-induced HSP17.6 expression in Arabidopsis. DOI: 10.17912/micropub.biology.000555 ; PMID: 35622526
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A178UCE2
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178UCE2
- EnsemblPlants: AT5G16820.1, AT5G16820.2
- Gramene: AT5G16820.1, AT5G16820.2
- KEGG: ath:AT5G16820
- Orthologous matrix: CETGNGE
- ExpressionAtlas: AT5G16820
- InterPro: IPR000232, IPR036388, IPR036390
- PANTHER: PTHR10015, PTHR10015:SF458
- SUPFAM: SSF46785
- PROSITE: PS00434
- Gene3D: 1.10.10.10
- SWISS-MODEL: A0A178UCE2
Sequences
cDNA Sequence
- >AT5G16820.2
CCGTTTAATTTAGGTGACAGTCAGAGTGTCTACCAAAACTAATCGTACAAAACCGAACTGAATTGAACCGAAATGGCCATGCCTGCTTTTCTTCAGCTTTAAGGGAAAAGATCAAAGATTGGGTCTTCAACACTTGAGAGAGTCTCTGTCTCTGTAAAAGATATTTGAGCTTGAGAAGAACAGAAGAAACTTCCAGGATCAATCAATCGATCAACTTTAGTGAACTAACTCTTGATTTTTCATTCGAAGTTATGGAATCGGTTCCCGAATCCGTACCATCGCCGAACTCGAATACACCGTCAATACCACCGCCGGTGAACTCCGTACCGCCTTTCTTGAGTAAAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTTTCGTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTCTTAGAGGCCGAAAACAACTACTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAAGTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAAGTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAACAGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGAGAATCGTGGTGACAATGTGGCTAATGGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCACAAAATATGCTTCGACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAGTTTCCTATTGGGTGATGTTCCCAGTTCTACCTCTGTAGACAATGGGAACCCTTCAAGTAGAGTTTCTGGAGTAACATTGGCCGAGTTTTCACCCAACACAGTTCAGTCAGCAACGAATCAAGTACCCGAAGCAAGTTTGGCTCATCATCCTCAAGCTGGTCTGGTTCAGCCAAATATAGGTCAAAGTCCGGCTCAAGGAGCAGCACCTGCAGACTCTTGGAGCCCTGAATTTGATTTAGTTGGATGCGAGACAGATAGTGGAGAGTGTTTTGATCCAATAATGGCTGTTTTAGATGAGTCAGAAGGCGATGCAATTTCTCCTGAAGGTGAGGGCAAGATGAATGAGTTACTGGAGGGAGTCCCTAAGCTGCCCGGAATCCAAGATCCATTCTGGGAACAGTTCTTTTCTGTTGAACTCCCAGCGATTGCAGATACAGACGATATTCTATCAGGATCAGTGGAGAATAATGACTTGGTATTGGAACAAGAACCAAACGAGTGGACCCGTAATGAACAACAAATGAAGTATCTTACTGAACAAATGGGACTGCTTTCCTCAGAAGCACAGAGGAAATAAAGGGGAGGTTGCAAAAGGAGATATGAAGGAACGAGGAATATATCAGATGGTGTGTATACCCTTTACATTTTTACTTAAATGAAAAAAAAACAGAGAGAAGAAACATAAAAGATTTACCACCAAGCTTGTGAATAGTTAGTAGAGATCGGTTTTTGTGTTGTTTATATTATACTTTTGTGTGAAAACGTTCATCTTGTTCAATTATCATCTCACTAGTACGGTAATCTGTTGGTCACTGACCGGTTAATGACCAAAAAATCAAGATTATTTTCTTATGTTTATTTCTTTTGATCATGAAGATCC - >AT5G16820.1
CCGTTTAATTTAGGTGACAGTCAGAGTGTCTACCAAAACTAATCGTACAAAACCGAACTGAATTGAACCGAAATGGCCATGCCTGCTTTTCTTCAGCTTTAAGGGAAAAGATCAAAGATTGGGTCTTCAACACTTGAGAGAGTCTCTGTCTCTGTAAAAGATATTTGAGCTTGAGAAGAACAGAAGAAACTTCCAGGATCAATCAATCGATCAACTTTAGTGAACTAACTCTTGATTTTTCATTCGAAGTTATGGAATCGGTTCCCGAATCCGTACCATCGCCGAACTCGAATACACCGTCAATACCACCGCCGGTGAACTCCGTACCGCCTTTCTTGAGTAAAACCTACGACATGGTTGATGATCCGTTGACCAATGAGGTCGTTTCGTGGAGCAGCGGGAACAACAGCTTCGTCGTCTGGAGTGCCCCGGAGTTCTCGAAGGTGCTCTTGCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGACAGTTAAATACTTATGGTTTCAGAAAAGTTGATCCTGACCGATGGGAATTTGCAAATGAAGGATTTCTTAGAGGCCGAAAACAACTACTGAAGAGTATTGTCAGGAGAAAACCTTCGCATGTGCAGCAGAATCAGCAACAAACTCAAGTTCAGAGCTCATCTGTTGGTGCTTGTGTCGAGGTGGGGAAGTTTGGAATAGAAGAAGAAGTGGAAAGACTTAAGCGGGATAAGAATGTTCTTATGCAAGAACTCGTCAGGTTAAGGCAGCAACAGCAAGCTACTGAAAACCAACTGCAGAATGTGGGACAGAAAGTTCAGGTGATGGAGCAAAGGCAACAACAAATGATGTCGTTTTTAGCAAAGGCTGTTCAAAGTCCAGGTTTCTTAAACCAGTTAGTACAACAGAATAATAATGATGGCAACAGACAAATTCCAGGAAGCAACAAAAAGAGGAGACTTCCTGTAGATGAGCAGGAGAATCGTGGTGACAATGTGGCTAATGGTCTTAACCGCCAGATTGTTAGATATCAGCCGTCGATAAACGAAGCAGCACAAAATATGCTTCGACAGTTCTTAAATACTAGTACCTCACCTCGGTATGAATCAGTTTCAAACAATCCTGACAGTTTCCTATTGGGTGATGTTCCCAGTTCTACCTCTGTAGACAATGGGAACCCTTCAAGTAGAGTTTCTGGAGTAACATTGGCCGAGTTTTCACCCAACACAGTTCAGTCAGCAACGAATCAAGTACCCGAAGCAAGTTTGGCTCATCATCCTCAAGCTGGTCTGGTTCAGCCAAATATAGGTCAAAGTCCGGCTCAAGGAGCAGCACCTGCAGACTCTTGGAGCCCTGAATTTGATTTAGTTGGATGCGAGACAGATAGTGGAGAGTGTTTTGATCCAATAATGGCTGTTTTAGATGAGTCAGAAGGCGATGCAATTTCTCCTGAAGGTGAGGGCAAGATGAATGAGTTACTGGAGGGAGTCCCTAAGCTGCCCGGAATCCAAGATCCATTCTGGGAACAGTTCTTTTCTGTTGAACTCCCAGCGATTGCAGATACAGACGATATTCTATCAGGATCAGTGGAGAATAATGACTTGGTATTGGAACAAGAACCAAACGAGTGGACCCGTAATGAACAACAAATGAAGTATCTTACTGAACAAATGGGACTGCTTTCCTCAGAAGCACAGAGGAAATAAAGGGGAGGTTGCAAAAGGAGATATGAAGGAACGAGGAATATATCAGATGGTGTGTATACCCTTTACATTTTTACTTAAATGAAAAAAAAACAGAGAGAAGAAACATAAAAGATTTACCACCAAGCTTGTGAATAGTTAGTAGAGATCGGTTTTTGTGTTGTTTATATTATACTTTTGTGTGAAAACGTTCATCTTGTTCAATTATCATCTCACTAGTACGGTAATCTGTTGGTCACTGACCGGTTAATGACCAAAAAATCAAGATTATTTTCTTATGTTTATTTCTTTTGATCATGAAGATCC
CDS Sequence
Protein Sequence