Information report for AT5G16680
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
- GO:0140566 — enables — histone reader activity
- GO:2000028 — acts upstream of or within negative effect — regulation of photoperiodism, flowering
- GO:0034244 — acts upstream of or within — negative regulation of transcription elongation by RNA polymerase II
- GO:0005515 — enables — protein binding
- GO:0005634 — located in — nucleus
- GO:0045814 — acts upstream of or within — negative regulation of gene expression, epigenetic
- GO:0042393 — enables — histone binding
- paipp2-1 — Multiple developmental defects, such as a dwarfed size, small leaves, and poor fertility.
- phd1/2/3/4/5/6 — Early flowering under long-day conditions.
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis. DOI: 10.1038/s41467-020-20089-0 ; PMID: 33277495
- A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis. DOI: 10.1111/jipb.13067 ; PMID: 33433058
- The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation. DOI: 10.1101/2023.01.10.523455 ; PMID: 36711532
Gene Resources
- UniProt: A0A384KWQ2
- EMBL: CACSHJ010000096, LUHQ01000005
- EnsemblPlants: AT5G16680.1, AT5G16680.2
- Gramene: AT5G16680.1, AT5G16680.2
- KEGG: ath:AT5G16680
- Orthologous matrix: ESHEGNK
- ExpressionAtlas: AT5G16680
- InterPro: IPR001965, IPR011011, IPR013083
- PANTHER: PTHR33304, PTHR33304:SF9
- SUPFAM: SSF57903
- PROSITE: PS50016
- Gene3D: 3.30.40.10
- OrthoDB: A0A384KWQ2
- SWISS-MODEL: A0A384KWQ2
Sequences
cDNA Sequence
- >AT5G16680.2
GATGATCTCGTTTTTGATATGTTCTTTGTCCATTTGTAACAGTGGCAAGGCTGGATAGAAATCTGTTTGGCAAGTCAGGAAATTTAATTTAATTGAAGATGGCTGATAGAAGAGTTGGTAAGCGCCAAATGGGTCAGAGAGGTTTTTCAAAAGTGGAGTCTGGAACTTGTAATGTTTGTTCTGCTCCTTGTTCATCATGCATGCACCGTAATGTTGGTTTCACAGGATCAAAGTTGGACGAGTCATCAGATGAAAACTGTCATGGAGTAGTGGGCAGCCAGTGTTCTGTAAACGAGGATGATCTTTTGCCTTCTTCTATGGTTAATGCTCACAAGAGTTTAAATAACACTGCTAGTGAAGCAAGCAATCTTGTCAATTCCAGTCATGATGCTCTCTCTGAGAATGCTGAGAGTAAGGAAACTATAAGATGTTCTGGGATATCAGATGATTCCGGAGCTGCTGCAATGACTTCTAAGCCATCTCTTTCTGGGAGCAGGATGAAACATAAAGTTTCTGCATCAGCTAATATGTTAGATCAGAGCTCTAACTGTATAGAAGACCAGGAAGATGGGATCTTGTCTGCTGATCGAGCCAAACAGTTGAAGTCAGGTTGTTCTAATAACGAGATTGGCAATAAGGATTTAGCTGATGGTTCAGCTCTCAATTCTGATCCAATTCCGGGTGGATCTAGGAAAGATGAAGTGAAATTAGAATCTTTGCAGAATCCATCATCCAACCATGATGACAGAGTCAGTTCTGAGAAGGGAAATTTCAAGGAAAAATCAAGACCCGGGGGTAACAAAGAGAGACAGGAACCTTCAGTTGAAGGATCTACGCGTTCAGGAGAGAACAGGAAGGATGGTAAGTCAAGTAAGAGCTCTTCGTCCAACTCATCAGCTGTGTCTGAGAGCGAGAGTGATGATTCTGAAATGGTCGAACATGATGTAAAGGTTTGTGATATCTGTGGAGATGCTGGTCGTGAAGATTTACTCGCTATCTGTAGCGGATGCAGTGATGGGGCAGAACACACCTATTGCATGCGGGAAATGCTGGATGAAGTTCCTGAGGGTGATTGGCTATGTGAAGAATGTGCTGAGGAAGCTGAAAAGCAGAAGCAAGAAGCTAAGAGAAAAAGAGAAACTGAGGTAACCTTCAATACTTATAGCTCTGGCAAAAGGCACGCAGATAAAATTGAGGCCGCTCCAGATGCTAAAAGACAGGTGGTTGAGGCTTCAACTGGCTCACCCAAGAAATCCATTCTCCCCAGAGTAGGTGCGTTATCTCGGGAAACATCATTCAAGGGCTTAGACAGGTTAAGGGGAAAGCTAAATCATCAAACATCATTCAGTGATGACACAGAAAGTGCACGATCTGCTGGTTCACAGCTCCAACCTCCAAAAGGTGCATTTTTGAAATCCAGTTCCTTTAATTGTTCGAGCTCGAAACCGAAAGTGCAACTTATGGATGATGCTATTCACCCAAGACAGAAGACTGGCAAAGAAGATACTGCACTTGATTTAAAAGTGGGGGGTTTTAGAAATGTAGGCAAGTCAATGCCAAGTAGAACTACAGATGCAGGGAATTCTGGTGGAAGCGACTCACAAGCAAAAATGCTTGGATCAAAAGTTTATCATTCACAAGAAGGCAAAAGCTTAAAGCAAGTGAAAGATCGTAATAGAGAAGCTAATGCATCAGCATCCTCCATTGATCAGAAGTTAAAGTCACGCGGCAATTCGTCTGTTTCACATGCAAACAATAATCGTGATTTAAAGGGTTTGCAGTCTGATGGTAAACGAGGTAACTTGACGAAACAAGTCAGCAATCTAAGCCGAAACCGTCTAGAAAATTCAGTTGTTTCGGGAGGAGATATTTCCACAAATGAAAAGTGCAGTGCCAGCGAGCAAAGTTCAAGTCAAGCTGACTGTAAGGATGAACTGCCATCCACTTCTTGTACGGGTGAAGGCATGCCAAACCACGGTACTGTAGCTTTACAGGATGGATTGCCGCGGTCCAGGGTACCTAGAGAGGTAGGGAAGAAAAGCAAAGAAGCCTTCAGTAAACGCCAAAGGTCTAGCCTGTTGGCTGGTGCAAAAGGCTTACCATCATCTCAAAAGGGAGGTCAGACTGCAGAATCCAGCGACACCTCAGGCGTGTCTGATAGTGATCTCTCTACCACGAAAAACGTTAAGGAGGATTTAAATAAGGGTAATAGGTTACGAGCAGCAGTAGATGCTGCTCTGCGTAAAAAGCCCAGCTTTGGCAAGAACAGAGTATTGGAGCAATCTGATGCGTCATTGGTAGCTAATGTGGATTCTAGTTCTGAAAAGACTCTACGAAATCAATTGCCTTCAAAGATGCATAAGAATCATGTGTCACACGAAGGATTGCAAGGAGGGCATCCGATTTTATGGCCTACTTCTGATCCGTACAAGCAGACAATTGTAACAAATGAGAAGCAGCTTATATTCCCTGGTGCTGATACTATACCTTCACGATTGGTGGAACCTGAAGTCAGTTTTCCCGCCGTAAAGCCTGTCATGAGAGATTTGCCTTTAGTTCCCTCACCTGTTATGTTGAGAAGCTCAGCCATTCCGGACCATGAGTTTATATGGCAGGGGGACTTAGAGGTGCGGAAAATCATAAACCAGTCAGCTATGCATAGCGGAATTCAAGCACATTTATCAACCTTAGCATCACCCAGGGTTGCTGAAGTGGTGAATAAATTTCCAGAAACTTTCAGTTTGAATGAAGTACCTCGGAAGAGTACATGGCCTACACAATTTGAAAAATTAGGTACTAAGGAAGCCCATATAGCTCTATTCTTCTTTGCAAAGGACACTGAGAGTTATGAGAGAAATTATAAGCCTCTGGTAGATAACATGATCAAGAACGATTTAGCCCTGAAAGGAAATCTCGATAACGTTGACCTTTTGATTTTTGCATCCAACCAGCTTCCTTCGAATTGCCAGCGCTGGAACATGTTATATTTCCTTTGGGGTGTCTTCCAAGGAAGAAAAGAGACTAACCCACAAAAGAACACATCTTTGCCTACTTCAAATGTTTTGCCGCGTGACAGAGACCCCAAGGAGCTGTGTCAAACGAGTTCTCCTTCCAAGCATTTGGAGAAAGGGTCTTCTCTACGTGAGAGCTCCAGCAACGGAATTGAAACACGGAATGGGACAGATGCACGTAGTCATGAGAATCCAAATAACAGGGAATCCTCTATTGAGCGATCACCGAGCAAAAAGGAGGATATTGCTCTTAAAGTGGAAGAAGCAGGTGTGAATCACATCCCCCCTCAAGTTACTGGATCAAATTCTGGAGATAGTCTAGTGAGGAAGGTTCAGAAAGTCGAGGAACAAGAATTAGGTGGTAGGAAGGATCTGCCATTGACGGTCATGGGCTCAGGGATCCAGTCCCATGGGCAAGATAATCCTCTAGAGAAAGATCTCAACAGTAGTCAGGCTAGTCACAGGAAGCGTCCACTTTGGGAACTGAGTAACCCCGCTAACGAGAATTCATCTGCCATAAACCAGAAAGTGGAGCTCAATAATGACGGTTTATGCGAAGGATCTCCGAATAAGAAGCTGAAGACAGAAAACGGAAGCAGCAGCCTCTGCCGGGATACATCTGGTCACGATTCCGGGATAATGAAAAAGAGTCCAAAAGTCGTGTTCCCATTGGACTTGAATGACGACAGTGAAATGGTGGATAATCTCAGCCCACTAGGCAATGACGAGAATAACAACAATAGACGTTTAATAAGCGGTACAGTCCCGAATCTGGAGCTGGCATTAGGAGCTGAGGAAACAACAGAAGCAACAATGGGACTATTACCTTTCTTAAGCAGAAGTAGCAACTCTGGTGAACAAAGTAATAATAGTATGAATAAAGAAAAACAGAAAGCAGATGAAGAAGAAGAAGATGACGCCGAAGTGGCAGCTTCTCTGTCGTTATCACTCTCATTTCCGGGAACTGAGGAGAGGAAGAATGTGAATACTCCGTTGTTCCTGTTCAGAGACCTTCCCAGATAAAAAGTTAAGTTATTATCGCAAGTTTTTTCTTTAAAATATATTTTGAGTGTCTTTAGTTGTCTTATGGTTGGTGAAGACTCCAACGAGATAAAATCACAGGTTTTGTATATAAAAATGGTGATGGGATTAAAAAAAGAAGAAAGGATACCGAATGTTTTTAAAATAATAACTGGTTTGATATATGATATCTATAGAAGAACAAA - >AT5G16680.1
GATGATCTCGTTTTTGATATGTTCTTTGTCCATTTGTAACAGTGGCAAGGCTGGATAGAAATCTGTTTGGCAAGTCAGGAAATTTAATTTAATTGAAGATGGCTGATAGAAGAGTTGGTAAGCGCCAAATGGGTCAGAGAGGTTTTTCAAAAGTGGAGTCTGGAACTTGTAATGTTTGTTCTGCTCCTTGTTCATCATGCATGCACCGTAATGTTGGTTTCACAGGATCAAAGTTGGACGAGTCATCAGATGAAAACTGTCATGGAGTAGTGGGCAGCCAGTGTTCTGTAAACGAGGATGATCTTTTGCCTTCTTCTATGGTTAATGCTCACAAGAGTTTAAATAACACTGCTAGTGAAGCAAGCAATCTTGTCAATTCCAGTCATGATGCTCTCTCTGAGAATGCTGAGAGTAAGGAAACTATAAGATGTTCTGGGATATCAGATGATTCCGGAGCTGCTGCAATGACTTCTAAGCCATCTCTTTCTGGGAGCAGGATGAAACATAAAGTTTCTGCATCAGCTAATATGTTAGATCAGAGCTCTAACTGTATAGAAGACCAGGAAGATGGGATCTTGTCTGCTGATCGAGCCAAACAGTTGAAGTCAGGTTGTTCTAATAACGAGATTGGCAATAAGGATTTAGCTGATGGTTCAGCTCTCAATTCTGATCCAATTCCGGGTGGATCTAGGAAAGATGAAGTGAAATTAGAATCTTTGCAGAATCCATCATCCAACCATGATGACAGAGTCAGTTCTGAGAAGGGAAATTTCAAGGAAAAATCAAGACCCGGGGGTAACAAAGAGAGACAGGAACCTTCAGTTGAAGGATCTACGCGTTCAGGAGAGAACAGGAAGGATGGTAAGTCAAGTAAGAGCTCTTCGTCCAACTCATCAGCTGTGTCTGAGAGCGAGAGTGATGATTCTGAAATGGTCGAACATGATGTAAAGGTTTGTGATATCTGTGGAGATGCTGGTCGTGAAGATTTACTCGCTATCTGTAGCGGATGCAGTGATGGGGCAGAACACACCTATTGCATGCGGGAAATGCTGGATGAAGTTCCTGAGGGTGATTGGCTATGTGAAGAATGTGCTGAGGAAGCTGAAAAGCAGAAGCAAGAAGCTAAGAGAAAAAGAGAAACTGAGGTAACCTTCAATACTTATAGCTCTGGCAAAAGGCACGCAGATAAAATTGAGGCCGCTCCAGATGCTAAAAGACAGGTGGTTGAGGCTTCAACTGGCTCACCCAAGAAATCCATTCTCCCCAGAGTAGGTGCGTTATCTCGGGAAACATCATTCAAGGGCTTAGACAGGTTAAGGGGAAAGCTAAATCATCAAACATCATTCAGTGATGACACAGAAAGTGCACGATCTGCTGGTTCACAGCTCCAACCTCCAAAAGGTGCATTTTTGAAATCCAGTTCCTTTAATTGTTCGAGCTCGAAACCGAAAGTGCAACTTATGGATGATGCTATTCACCCAAGACAGAAGACTGGCAAAGAAGATACTGCACTTGATTTAAAAGTGGGGGGTTTTAGAAATGTAGGCAAGTCAATGCCAAGTAGAACTACAGATGCAGGGAATTCTGGTGGAAGCGACTCACAAGCAAAAATGCTTGGATCAAAAGTTTATCATTCACAAGAAGGCAAAAGCTTAAAGCAAGTGAAAGATCGTAATAGAGAAGCTAATGCATCAGCATCCTCCATTGATCAGAAGTTAAAGTCACGCGGCAATTCGTCTGTTTCACATGCAAACAATAATCGTGATTTAAAGGGTTTGCAGTCTGATGGTAAACGAGGTAACTTGACGAAACAAGTCAGCAATCTAAGCCGAAACCGTCTAGAAAATTCAGTTGTTTCGGGAGGAGATATTTCCACAAATGAAAAGTGCAGTGCCAGCGAGCAAAGTTCAAGTCAAGCTGACTGTAAGGATGAACTGCCATCCACTTCTTGTACGGGTGAAGGCATGCCAAACCACGGTACTGTAGCTTTACAGGATGGATTGCCGCGGTCCAGGGTACCTAGAGAGGTAGGGAAGAAAAGCAAAGAAGCCTTCAGTAAACGCCAAAGGTCTAGCCTGTTGGCTGGTGCAAAAGGCTTACCATCATCTCAAAAGGGAGGTCAGACTGCAGAATCCAGCGACACCTCAGGCGTGTCTGATAGTGATCTCTCTACCACGAAAAACGTTAAGGAGGATTTAAATAAGGGTAATAGGTTACGAGCAGCAGTAGATGCTGCTCTGCGTAAAAAGCCCAGCTTTGGCAAGAACAGAGTATTGGAGCAATCTGATGCGTCATTGGTAGCTAATGTGGATTCTAGTTCTGAAAAGACTCTACGAAATCAATTGCCTTCAAAGATGCATAAGAATCATGTGTCACACGAAGGATTGCAAGGAGGGCATCCGATTTTATGGCCTACTTCTGATCCGTACAAGCAGACAATTGTAACAAATGAGAAGCAGCTTATATTCCCTGGTGCTGATACTATACCTTCACGATTGGTGGAACCTGAAGTCAGTTTTCCCGCCGTAAAGCCTGTCATGAGAGATTTGCCTTTAGTTCCCTCACCTGTTATGTTGAGAAGCTCAGCCATTCCGGACCATGAGTTTATATGGCAGGGGGACTTAGAGGTGCGGAAAATCATAAACCAGTCAGCTATGCATAGCGGAATTCAAGCACATTTATCAACCTTAGCATCACCCAGGGTTGCTGAAGTGGTGAATAAATTTCCAGAAACTTTCAGTTTGAATGAAGTACCTCGGAAGAGTACATGGCCTACACAATTTGAAAAATTAGGTACTAAGGAAGCCCATATAGCTCTATTCTTCTTTGCAAAGGACACTGAGAGTTATGAGAGAAATTATAAGCCTCTGGTAGATAACATGATCAAGAACGATTTAGCCCTGAAAGGAAATCTCGATAACGTTGACCTTTTGATTTTTGCATCCAACCAGCTTCCTTCGAATTGCCAGCGCTGGAACATGTTATATTTCCTTTGGGGTGTCTTCCAAGGAAGAAAAGAGACTAACCCACAAAAGAACACATCTTTGCCTACTTCAAATGTTTTGCCGCGTGACAGAGACCCCAAGGAGCTGTGTCAAACGAGTTCTCCTTCCAAGCATTTGGAGAAAGGGTCTTCTCTACGTGAGAGCTCCAGCAACGGAATTGAAACACGGAATGGGACAGATGCACGTAGTCATGAGAATCCAAATAACAGGGAATCCTCTATTGAGCGATCACCGAGCAAAAAGGAGGATATTGCTCTTAAAGTGGAAGAAGCAGGTGTGAATCACATCCCCCCTCAAGTTACTGGATCAAATTCTGGAGATAGTCTAGTGAGGAAGGTTCAGAAAGTCGAGGAACAAGAATTAGGTGGTAGGAAGGATCTGCCATTGACGGTCATGGGCTCAGGGATCCAGTCCCATGGGCAAGATAATCCTCTAGAGAAAGATCTCAACAGTAGTCAGGCTAGTCACAGGAAGCGTCCACTTTGGGAACTGAGTAACCCCGCTAACGAGAATTCATCTGCCATAAACCAGAAAGTGGAGCTCAATAATGACGGTTTATGCGAAGGATCTCCGAATAAGAAGCTGAAGACAGAAAACGGAAGCAGCAGCCTCTGCCGGGATACATCTGGTCACGATTCCGGGATAATGAAAAAGAGTCCAAAAGTCGTGTTCCCATTGGACTTGAATGACGACAGTGAAATGGTGGATAATCTCAGCCCACTAGGCAATGACGAGAATAACAACAATAGACGTTTAATAAGCGGTACAGTCCCGAATCTGGAGCTGGCATTAGGAGCTGAGGAAACAACAGAAGCAACAATGGGACTATTACCTTTCTTAAGCAGAAGTAGCAACTCTGGTGAACAAAGTAATAATAGTATGAATAAAGAAAAACAGAAAGCAGATGAAGAAGAAGAAGATGACGCCGAAGTGGCAGCTTCTCTGTCGTTATCACTCTCATTTCCGGGAACTGAGGAGAGGAAGAATGTGAATACTCCGTTGTTCCTGTTCAGAGACCTTCCCAGATAAAAAGTTAAGTTATTATCGCAAGTTTTTTCTTTAAAATATATTTTGAGTGTCTTTAGTTGTCTTATGGTTGGTGAAGACTCCAACGAGATAAAATCACAGGTTTTGTATATAAAAATGGTGATGGGATTAAAAAAAGAAGAAAGGATACCGAATGTTTTTAAAATAATAACTGGTTTGATATATGATATCTATAGAAGAACAAA
CDS Sequence
Protein Sequence