Gene Details:

• Gene ID: AT5G16680
• Gene Symbol: PAIPP2, PHD2
• Gene Name:
• Description: RING/FYVE/PHD zinc finger superfamily protein;(source:Araport11)
• TAIR Accession: locus:2148985
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT5G16680.1     AT5G16680.2

Plant Ontology Annotations:

• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0000084  — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)

Gene Ontology:

• GO:0140566  — enables — histone reader activity
• GO:2000028  — acts upstream of or within negative effect — regulation of photoperiodism, flowering
• GO:0034244  — acts upstream of or within — negative regulation of transcription elongation by RNA polymerase II
• GO:0005515  — enables — protein binding
• GO:0005634  — located in — nucleus
• GO:0045814  — acts upstream of or within — negative regulation of gene expression, epigenetic
• GO:0042393  — enables — histone binding

Germplasm Phenotype:

• paipp2-1  — Multiple developmental defects, such as a dwarfed size, small leaves, and poor fertility.
• phd1/2/3/4/5/6  — Early flowering under long-day conditions.

Function-related keywords:

• root ,  plant sperm cell

Literature:

• Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana.   DOI:  10.1074/jbc.M308435200 ;  PMID:  14576160
• Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes.   DOI:  10.1186/1471-2164-9-113 ;  PMID:  18315867
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-13-229 ;  PMID:  24377444
• Coupling of H3K27me3 recognition with transcriptional repression through the BAH-PHD-CPL2 complex in Arabidopsis.   DOI:  10.1038/s41467-020-20089-0 ;  PMID:  33277495
• A histone H3K27me3 reader cooperates with a family of PHD finger-containing proteins to regulate flowering time in Arabidopsis.   DOI:  10.1111/jipb.13067 ;  PMID:  33433058
• The MOM1 complex recruits the RdDM machinery via MORC6 to establish de novo DNA methylation.   DOI:  10.1101/2023.01.10.523455 ;  PMID:  36711532

Sequences: