Information report for AT5G16620
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0031897 — part of — Tic complex
- GO:0045037 — acts upstream of or within — protein import into chloroplast stroma
- GO:0009941 — located in — chloroplast envelope
- GO:0009535 — located in — chloroplast thylakoid membrane
- GO:0005515 — enables — protein binding
- GO:0009658 — involved in — chloroplast organization
- GO:0009658 — acts upstream of or within — chloroplast organization
- GO:0009706 — is active in — chloroplast inner membrane
- GO:0009507 — located in — chloroplast
- GO:0045037 — involved in — protein import into chloroplast stroma
- GO:0009706 — located in — chloroplast inner membrane
- GO:0009536 — located in — plastid
Functional Keywords
Literature and News
- Arabidopsis genes encoding components of the chloroplastic protein import apparatus. DOI: 10.1104/pp.125.4.1567 ; PMID: 11299338
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Targeting of nucleus-encoded proteins to chloroplasts in plants. DOI: 10.1111/j.1469-8137.2008.02452.x ; PMID: 19086173
- Arabidopsis Tic40 expression in tobacco chloroplasts results in massive proliferation of the inner envelope membrane and upregulation of associated proteins. DOI: 10.1105/tpc.108.063172 ; PMID: 19060109
- Stimulation of transit-peptide release and ATP hydrolysis by a cochaperone during protein import into chloroplasts. DOI: 10.1083/jcb.200609172 ; PMID: 17158958
- Tic40 is important for reinsertion of proteins from the chloroplast stroma into the inner membrane. DOI: 10.1111/j.1365-313X.2008.03638.x ; PMID: 18657235
- Stromal Hsp70 is important for protein translocation into pea and Arabidopsis chloroplasts. DOI: 10.1105/tpc.109.071415 ; PMID: 20484004
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. DOI: 10.1186/1471-2229-11-113 ; PMID: 21838868
- An essential role for chloroplast heat shock protein 90 (Hsp90C) in protein import into chloroplasts. DOI: 10.1073/pnas.1219229110 ; PMID: 23382192
- The TIC complex uncovered: The alternative view on the molecular mechanism of protein translocation across the inner envelope membrane of chloroplasts. DOI: 10.1016/j.bbabio.2015.02.011 ; PMID: 25689609
- Identification of Putative Substrates of SEC2, a Chloroplast Inner Envelope Translocase. DOI: 10.1104/pp.17.00012 ; PMID: 28213560
- Suppressors of the Chloroplast Protein Import Mutant tic40 Reveal a Genetic Link between Protein Import and Thylakoid Biogenesis. DOI: 10.1105/tpc.16.00962 ; PMID: 28684427
- TIC236 links the outer and inner membrane translocons of the chloroplast. DOI: 10.1038/s41586-018-0713-y ; PMID: 30464337
- Photosynthesis in Arabidopsis Is Unaffected by the Function of the Vacuolar K(+) Channel TPK3. DOI: 10.1104/pp.19.00255 ; PMID: 31053658
- Arabidopsis ORANGE protein regulates plastid pre-protein import through interacting with Tic proteins. DOI: 10.1093/jxb/eraa528 ; PMID: 33165598
- Two plastid POLLUX ion channel-like proteins are required for stress-triggered stromal Ca2+release. DOI: 10.1093/plphys/kiab424 ; PMID: 34618095
- Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. DOI: 10.1074/mcp.M300030-MCP200 ; PMID: 12766230
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- In vivo studies on the roles of Tic110, Tic40 and Hsp93 during chloroplast protein import. DOI: 10.1111/j.1365-313X.2004.02307.x ; PMID: 15659100
- Reconstitution of protein targeting to the inner envelope membrane of chloroplasts. DOI: 10.1083/jcb.200605162 ; PMID: 17060496
- Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. DOI: 10.1021/pr060525b ; PMID: 17432890
- Functional similarity between the chloroplast translocon component, Tic40, and the human co-chaperone, Hsp70-interacting protein (Hip). DOI: 10.1074/jbc.M611545200 ; PMID: 17535810
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
Gene Resources
- UniProt: A0A178UEV6
- EMBL: LUHQ01000005
- AlphaFoldDB: A0A178UEV6
- EnsemblPlants: AT5G16620.1
- Gramene: AT5G16620.1
- KEGG: ath:AT5G16620
- Orthologous matrix: MQQVFKT
- ExpressionAtlas: AT5G16620
- InterPro: IPR006636, IPR041243
- PANTHER: PTHR47296, PTHR47296:SF1
- Gene3D: 1.10.260.100
- SWISS-MODEL: A0A178UEV6
Sequences
cDNA Sequence
- >AT5G16620.1
AAAAAGGTTTCAGTACACTTAGCTACACTGGATCCAAGTCTAGTGCTAAACTCAAACCTCGTGGTTTTAGACCAAAATCTCTTCTTCTTCGTTTCCTTCTTCCTCATCATATCTTTCATCTTCTCCACCAGAATTTGTTTTAGGCTCTCCTTCTTCTGTTTCTTTTTCTCCCAAAGAAACAATTAGATATGGAGAACCTTACCCTAGTTTCTTGCTCAGCTTCTTCTCCAAAGCTGTTAATTGGATGCAATTTCACTTCCTCGCTGAAAAACCCTACTGGGTTTTCTCGTCGGACTCCTAATATTGTCCTCCGGTGTTCCAAAATATCTGCCTCTGCTCAATCTCAATCTCCCTCTTCGCGTCCGGAGAACACTGGAGAAATCGTGGTTGTGAAACAGAGAAGCAAAGCTTTTGCAAGTATATTTTCTTCGAGTCGTGATCAACAGACAACTTCTGTTGCTTCCCCTAGTGTGCCTGTGCCACCACCATCTTCATCAACCATAGGATCACCACTTTTCTGGATTGGTGTTGGTGTTGGTCTATCAGCTTTGTTCTCATATGTAACTTCAAATTTAAAGAAATATGCAATGCAAACAGCTATGAAGACGATGATGAACCAAATGAATACGCAAAATAGCCAGTTTAATAATTCTGGATTCCCATCAGGATCACCTTTTCCGTTTCCATTTCCTCCTCAAACAAGTCCTGCTTCCTCGCCATTCCAATCTCAATCCCAGTCTTCAGGTGCTACCGTTGATGTGACAGCGACAAAAGTAGAGACACCTCCTTCAACTAAACCGAAACCTACACCTGCAAAGGATATAGAGGTGGATAAGCCAAGTGTTGTCTTAGAGGCAAGCAAAGAGAAGAAAGAAGAAAAGAACTATGCCTTTGAAGACATTTCACCCGAGGAAACCACAAAAGAAAGCCCATTTAGCAACTATGCAGAAGTCTCTGAAACTAATTCCCCCAAAGAAACTCGCTTGTTTGAGGATGTCTTGCAAAATGGAGCTGGTCCGGCAAATGGTGCCACTGCTTCAGAGGTTTTTCAATCTTTGGGTGGTGGGAAAGGAGGGCCGGGTTTATCTGTAGAAGCTTTAGAGAAAATGATGGAAGATCCAACAGTCCAGAAGATGGTTTACCCATACTTGCCTGAGGAGATGAGGAACCCAGAAACTTTCAAATGGATGCTTAAAAATCCTCAGTACCGTCAACAACTACAGGACATGTTGAATAATATGAGTGGGAGTGGTGAATGGGACAAGCGAATGACAGATACATTGAAGAATTTTGACCTGAATAGTCCTGAAGTGAAGCAACAATTCAATCAAATAGGACTAACTCCAGAAGAAGTCATATCTAAGATCATGGAGAACCCTGATGTTGCCATGGCATTCCAGAATCCTAGAGTCCAAGCAGCGTTAATGGAATGCTCAGAGAACCCAATGAACATCATGAAGTACCAAAACGACAAAGAGGTAATGGATGTGTTCAACAAGATATCGCAGCTCTTCCCAGGAATGACGGGTTGAAAAAGCTCACGTCTTTGGTTCTATCAAAAATGTCACATTGTCTTTAGCTTTTTGTAGGGAGAAAAAAATGTTTTTTTTTTTGCAAAGAGTCTTCAGTTTTGGTCAGATCAGAGAATTGTGTACCATGTTAATCTTAAACGCGGTCGGGAATTGGAGTCGTGTGAAAACGCCGCTGCTGTTGTTTGGTATGAATATTATACAATAGAATTTGTTGTCTTACCAAAAAAAGTCTATGAAGACACTGAAGAGCAAATTATTATTTTTAAGGGAAAATTTCCAAAATAAACTTCATGTATTCAAAATTTGCTTGAAAAAACCTCA
CDS Sequence
Protein Sequence