Information report for AT5G16600
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0005634 — located in — nucleus
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:1901141 — acts upstream of or within — regulation of lignin biosynthetic process
- GO:0009094 — acts upstream of or within — L-phenylalanine biosynthetic process
- GO:2000652 — acts upstream of or within — regulation of secondary cell wall biogenesis
- GO:2000762 — acts upstream of or within — regulation of phenylpropanoid metabolic process
- GO:0030154 — involved in — cell differentiation
- GO:0005634 — is active in — nucleus
- myb20/42/43/85 — semidwarf
- myb20/42/43/85 — shorter siliques with compromised fertility
Functional Keywords
Literature and News
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
- Global transcript profiling of primary stems from Arabidopsis thaliana identifies candidate genes for missing links in lignin biosynthesis and transcriptional regulators of fiber differentiation. DOI: 10.1111/j.1365-313X.2005.02403.x ; PMID: 15918878
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- CressExpress: a tool for large-scale mining of expression data from Arabidopsis. DOI: 10.1104/pp.107.115535 ; PMID: 18467456
- A battery of transcription factors involved in the regulation of secondary cell wall biosynthesis in Arabidopsis. DOI: 10.1105/tpc.108.061325 ; PMID: 18952777
- MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. DOI: 10.1093/pcp/pcr185 ; PMID: 22197883
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- MYB20, MYB42, MYB43, and MYB85 Regulate Phenylalanine and Lignin Biosynthesis during Secondary Cell Wall Formation. DOI: 10.1104/pp.19.01070 ; PMID: 31871072
- MYB43 as a novel substrate for CRL4(PRL1) E3 ligases negatively regulates cadmium tolerance through transcriptional inhibition of HMAs in Arabidopsis. DOI: 10.1111/nph.18020 ; PMID: 35129221
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Identification of novel genes in Arabidopsis involved in secondary cell wall formation using expression profiling and reverse genetics. DOI: 10.1105/tpc.105.031542 ; PMID: 15980264
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
Gene Resources
- UniProt: Q9SPG7
- EMBL: AB008270, AF175990, AY519625
- AlphaFoldDB: Q9SPG7
- EnsemblPlants: AT5G16600.1
- Gramene: AT5G16600.1
- KEGG: ath:AT5G16600
- Orthologous matrix: NPHEIFV
- ExpressionAtlas: AT5G16600
Sequences
cDNA Sequence
- >AT5G16600.1
ATAGGTTGTTGTGTAGCCTCTTTAGTCTTGGAAATACAACATATTATAAGTATATTAGGTAACATATATGATCATATCTCTATATATAAAGTAGGTATATATATATTTAGCGAGAGAGGGAGAGAGATGGGGAGGCAACCATGTTGTGACAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAAGAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTTCCCAAGCTTTCTGGACTATTGCGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTATTTAAGACCTGATTTAAAAAGAGGTCTTTTATCAGAATATGAAGAACAAAAGGTCATTAATCTCCATGCGCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACTGATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAAATGGGTATTGACCCTTTGACCCATAAGCCTCTCTCTGAACAAGAAGCTTCACAACAAGCTCAAGGGAGAAAGAAAAGTTTAGTGCCTCATGATGACAAGAACCCAAAACAAGATCAACAAACCAAAGACGAACAAGAACAACATCAATTAGAGCAAGCTTTGGAGAAGAACAACACATCAGTGTCTGGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCGACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAATGTCAATATCAACACTAGTAAATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACGTCGTCGTGTATATCATCAGTAGTACCGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTTCATCCGATGATTCTTTAGGGGACGATATTAGCAAAGACGGCAAGTTCAACAACAGTACTGTTGATACGATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATGAACATGATGATGGTTTTATTGGAAATGGAAATGGATGTTCAAGAATGGTTTTAGATCAAGATTCATGGACATTTGATCTCCTCTAGCTTTTAGTTTTTTCTTGATGTTTTTTTAATTAGATTTTTTTTTTTTGTTCTTGAAGTAGTGGGGGGATTTGGGGTTGGCTTGGTGTTGCAGTTTAGTGGATTATGGTGTACAATACATGTAATAAAGATTGCAGTTGTGGACAGATCGTTTTTTCTGTTTTTTTTCCTTCACTTACGAAATATTTCTTTGGAAAAATATATATAAAACACCATTAAAGT
CDS Sequence
Protein Sequence