Gene Details:
- Gene ID: AT5G16540
- Gene Symbol: AtC3H57, ZFN3
- Gene Name: zinc finger nuclease 3
- Description: zinc finger nuclease 3;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000084 — plant sperm cell — célula espermática o esperma (Spanish, exact), male gamete (exact), microgamete (exact), 植物精子細胞 (Japanese, exact), sperm nucleus (related), sperm cell (broad)
Function-related keywords:
Literature:
- Full-length messenger RNA sequences greatly improve genome annotation. DOI: 10.1186/gb-2002-3-6-research0029 ; PMID: 12093376
- Targeted mutagenesis using zinc-finger nucleases in Arabidopsis. DOI: 10.1073/pnas.0409339102 ; PMID: 15677315
- Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit. DOI: 10.1104/pp.105.070672 ; PMID: 16500995
- Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. DOI: 10.1186/1471-2164-9-44 ; PMID: 18221561
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. DOI: 10.3389/fpls.2015.00829 ; PMID: 26528302
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Sequences:
cDNA Sequence
- >AT5G16540.2
AACACTTTCTTCCCAATCTCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCCATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATGGGACTTCCCATCGGAAAATCTCTTAGAGTGAGAGAATTATGGTGTGTTCTTAATGCTTAATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGATTTTGATTCCATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAACTGGTCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGATCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGGAAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAATACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAGAGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACCCTGTGTTTTGTCTATCTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATGATATCTGATCTAATCTGATTCGCCTTTTGTTGT - >AT5G16540.3
AACACTTTCTTCCCAATCTCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCCATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATGGGACTTCCCATCGGAAAATCTCTTAGAGTGAGAGAATTATGGTGTGTTCTTAATGCTTAATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGATTTTGATTCCATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAACTGGTCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGATCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGGAAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAATACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAGAGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACCCTGTGTTTTGTCTATCTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATGATATCTGATCTAATCTGATTCGCCTTTTGTTGT - >AT5G16540.4
AACACTTTCTTCCCAATCTCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCCATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATGGGACTTCCCATCGGAAAATCTCTTAGAGTGAGAGAATTATGGTGTGTTCTTAATGCTTAATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGATTTTGATTCCATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAACTGGTCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGATCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGGAAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAATACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAGAGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACCCTGTGTTTTGTCTATCTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATGATATCTGATCTAATCTGATTCGCCTTTTGTTGT - >AT5G16540.1
AACACTTTCTTCCCAATCTCTCTCTGCTTTCTCTCTCTAGACGTGATCTCTAATTCTCTAATGTCTTCCTGCATTGCCATTTCCTCTAACCCCTCCACAATCGGAGGAAGACGATTCCTGGGAGCAAGAGAAACGATGGGACTTCCCATCGGAAAATCTCTTAGAGTGAGAGAATTATGGTGTGTTCTTAATGCTTAATAATCACCGACACAGCCATTGTTCTTCATCATCTCCATGGATTTTGATTCCATTTCTCGGGAAAGCACTTTTCTTTCCCCATTGCTTAACCAAAATGCAATGTGGCAAATGAACTTGGGATCAGATGATACAATGGGTGTTGATGGGTCTTATCCGGAACGTCACGGAGAGCCAGATTGTGCTTATTATATAAGGACTGGACTTTGTAGGTTTGGTTCAACTTGCCGATTCAATCATCCTCACGACCGGAAACTGGTTATAGCAACTGCAAGGATTAAAGGAGAATACCCTGAAAGAATTGGTCAGCCTGAATGTGAGTTTTATCTGAAGACAGGGACCTGCAAATTCGGAGTGACTTGCAAGTTTCATCATCCTAGGAACAAAGCTGGTATTGATGGAAGTGTATCAGTTAATGTCTTAAGCTATCCTCTACGTCCGAACGAAGATGATTGCTCTTACTTTTTGAGAATTGGACAATGTAAATTTGGGGGAACTTGTAAATTCAATCACCCTCAGACTCAATCAACCAACTTGATGGTTTCTGTTCGTGGCTCTCCGGTTTACTCTGCTCTTCAATCTCTAACTGGTCAACCGTCTTATTCTTGGTCGAGAACATCTTTTGTTGCAAACCCTCCTCGTTTGCAAGATCCTTCTGGTTTCGCTTCAGGATCTCAAGGAGGTCTCTTCTCATCCGGGTTTCATTCGGGAAATTCTGTTCCGCTCGGGTTCTATGCATTACCTAGAGAGAATGTATTCCCGGAAAGACCAGGCCAACCTGAATGCCAATTCTACATGAAGACAGGAGATTGCAAATTTGGAACAGTCTGCAAATTTCATCATCCTAGAGACAGGCAAACCCCTCCTCCTGATTGTGTCTTAAGCTCGGGAGAACCACTGTGCGTGTTCTATTCTCGGTATGGGATCTGCAAGTTTGGTCCAAGCTGTAAATTTGATCACCCGATGCGAGTCTTCACTTACAACAACAATACTGCATCTCCTTCTCCTTCATCATCTCTGCATCAAGAGACTGCAATCACCACAGAGCTCAGGAATCTCCTAGTCTCTTCTTCTGTGGAAGCAAAACCCACATCACTCCCTGAAACAACCTCTGCTAAAGACACCATTGTTGATGCACAGCACTGAAAACCCTGTGTTTTGTCTATCTTGAAACAATATGTAACATTTGTTTTGCTTTATCTTGTAAGCATTTATGTACAGAGATGATATCTGATCTAATCTGATTCGCCTTTTGTTGT
CDS Sequence
Protein Sequence