Information report for AT5G16530
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- pin5-5 — Defective in lateral root initiation as well as in root and hypocotyl growth; root growth less sensitive to low concentrations of IAA.
Functional Keywords
Literature and News
- Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes. DOI: 10.1046/j.1365-313x.2002.01416.x ; PMID: 12383089
- The PIN auxin efflux facilitators: evolutionary and functional perspectives. DOI: 10.1016/j.tplants.2005.02.009 ; PMID: 15817418
- MAX1, a regulator of the flavonoid pathway, controls vegetative axillary bud outgrowth in Arabidopsis. DOI: 10.1073/pnas.0509463102 ; PMID: 16387852
- PINOID positively regulates auxin efflux in Arabidopsis root hair cells and tobacco cells. DOI: 10.1105/tpc.105.035972 ; PMID: 16731587
- ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize. DOI: 10.1104/pp.106.080119 ; PMID: 16844839
- Expression of PIN genes in rice (Oryza sativa L.): tissue specificity and regulation by hormones. DOI: 10.1093/mp/ssp023 ; PMID: 19825657
- Differential auxin-transporting activities of PIN-FORMED proteins in Arabidopsis root hair cells. DOI: 10.1104/pp.110.156505 ; PMID: 20439545
- Inter-regulation of the unfolded protein response and auxin signaling. DOI: 10.1111/tpj.12373 ; PMID: 24180465
- Control of vein patterning by intracellular auxin transport. DOI: 10.4161/psb.27205 ; PMID: 24304505
- Intracellular auxin transport in pollen: PIN8, PIN5 and PILS5. DOI: 10.4161/psb.21953 ; PMID: 22990451
- The promoter of the Arabidopsis PIN6 auxin transporter enabled strong expression in the vasculature of roots, leaves, floral stems and reproductive organs. DOI: 10.4161/psb.27898 ; PMID: 24487186
- Control of vein network topology by auxin transport. DOI: 10.1186/s12915-015-0208-3 ; PMID: 26560462
- Na(+) ,K(+) /H(+) antiporters regulate the pH of endoplasmic reticulum and auxin-mediated development. DOI: 10.1111/pce.13153 ; PMID: 29360148
- The plant hormone auxin directs timing of xylem development by inhibition of secondary cell wall deposition through repression of secondary wall NAC-domain transcription factors. DOI: 10.1111/ppl.12766 ; PMID: 29808599
- The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size. DOI: 10.1016/j.cub.2019.02.022 ; PMID: 30880016
- Melatonin acts synergistically with auxin to promote lateral root development through fine tuning auxin transport in Arabidopsis thaliana. DOI: 10.1371/journal.pone.0221687 ; PMID: 31461482
Gene Resources
- UniProt: A0A178UIR3
- EMBL: CACRSJ010000110, CACSHJ010000096, LR881470
- AlphaFoldDB: A0A178UIR3
- EnsemblPlants: AT5G16530.1
- Gramene: AT5G16530.1
- KEGG: ath:AT5G16530
- Orthologous matrix: YYAVLEF
- ExpressionAtlas: AT5G16530
- InterPro: IPR004776, IPR014024, IPR051107
- PANTHER: PTHR31752, PTHR31752:SF2
- OrthoDB: A0A178UIR3
- SWISS-MODEL: A0A178UIR3
Sequences
cDNA Sequence
- >AT5G16530.2
AAAATTTATCTATAAATATGAACATGTTGGTTTCTCTATCGTAACACATTTACTATCTACGAACGAATTTAGAAGCTTTGTTTTCTTTCCTTTCGTTTGCTACTACTGCAACATTTCTATTTTTCTGATAAAACCATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCCTTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGATGCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCCCATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTCATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGGTCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTGGCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAAGCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGTAGTAATAATATCAGCGACGTACAAGTAGACAACATCAATATCGAAAGTGGAAAAAGAGAAACTGTGGTTGTGGGAGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAAGCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTCTAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAAAGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTTGATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACCGGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGCCATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGGATTACATGCAGATGTTCTAAGCACAGCGTAAGTCCAAATTTTAAAAATTCAGTCTATTTAAGAAGAAAATGGTAATATGAAATTAAATTAAAATTTTGATAAATGTAGGGTGATATTTGGGATGTTGGTCTCTCTACCTGTGCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGATTAAACTAATAAATTCGATTATATCATCAATATTACCCTTTGTTCATCTTTCACAAGTTTTTTTTTTTGTTATCTCTTTTACACTTTCCTCCTAAAGGAGATTTTGAAGTATATTCGAGATATGAAAACCATTAACTGAATGAATTAACCTAGTTTATGCTTAATTTTATA - >AT5G16530.1
AAAATTTATCTATAAATATGAACATGTTGGTTTCTCTATCGTAACACATTTACTATCTACGAACGAATTTAGAAGCTTTGTTTTCTTTCCTTTCGTTTGCTACTACTGCAACATTTCTATTTTTCTGATAAAACCATGATAAATTGTGGAGATGTTTACAAGGTAATCGAAGCAATGGTTCCACTCTATGTAGCCTTAATCTTAGGCTATGGCTCTGTGAAATGGTGGCACATCTTCACGCGTGATCAATGTGATGCTATAAACCGTCTCGTTTGCTATTTCACCCTGCCGCTCTTCACCATTGAGTTCACGGCCCATGTCGACCCGTTCAACATGAATTACCGGTTCATCGCGGCCGATGTCCTCTCTAAGGTCATCATAGTCACGGTCTTAGCGTTGTGGGCCAAATATAGCAACAAAGGAAGCTATTGTTGGTCCATTACTAGTTTCTCTCTATGCACTCTTACTAACTCTCTTGTCGTTGGTGTGCCATTGGCTAAGGCAATGTACGGACAACAGGCTGTTGATCTGGTGGTTCAATCCTCGGTATTTCAAGCCATCGTGTGGCTCACACTCTTGTTGTTTGTCTTAGAGTTTAGAAAAGCCGGATTTAGTAGTAATAATATCAGCGACGTACAAGTAGACAACATCAATATCGAAAGTGGAAAAAGAGAAACTGTGGTTGTGGGAGAGAAGTCGTTCCTTGAGGTCATGTCCCTCGTTTGGTTGAAGCTTGCAACGAATCCAAATTGCTATTCTTGCATCCTTGGGATCGCATGGGCTTTTATTTCTAACAGATGGCATCTGGAGCTGCCGGGCATATTAGAGGGTTCGATTCTTATAATGTCAAAAGCAGGAACAGGAACGGCCATGTTCAATATGGGAATATTCATGGCACTTCAAGAAAAGTTGATAGTATGTGGAACAAGCTTGACTGTGATGGGAATGGTATTGAAGTTTATTGCCGGACCGGCGGCCATGGCCATCGGCTCTATTGTCCTTGGCCTCCACGGTGATGTCCTCCGCGTAGCCATCATTCAGGCTGCTTTGCCACAATCGATTACTTCGTTCATTTTTGCTAAGGAATATGGATTACATGCAGATGTTCTAAGCACAGCGTAAGTCCAAATTTTAAAAATTCAGTCTATTTAAGAAGAAAATGGTAATATGAAATTAAATTAAAATTTTGATAAATGTAGGGTGATATTTGGGATGTTGGTCTCTCTACCTGTGCTCGTCGCCTACTACGCAGCTCTGGAGTTTATTCATTGATTAAACTAATAAATTCGATTATATCATCAATATTACCCTTTGTTCATCTTTCACAAGTTTTTTTTTTTGTTATCTCTTTTACACTTTCCTCCTAAAGGAGATTTTGAAGTATATTCGAGATATGAAAACCATTAACTGAATGAATTAACCTAGTTTATGCTTAATTTTATA
CDS Sequence
Protein Sequence