Information report for AT5G15800
Gene Details
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Functional Descriptions
- CS69927 — sep1sep2sep3+/- plants do not show any strong phenotype, but some flowers show an extended gynophore. sep1sep2sep3 triple mutants have strong floral phenotype. All floral organs are sepaloid and flowers are indeterminate. sep1sep2 plants do not have a visible phenotype.
- CS69930 — While the first three whorls (sepals, petals and stamens) harbor normal floral organs, the fourth whorl exhibits unfused carpels and an indeterminate flower-within-a-flower phenotype.
- CS69931 — While the first three whorls (sepals, petals and stamens) harbor normal floral organs, the fourth whorl exhibits unfused carpels and an indeterminate flower-within-a-flower phenotype.
- ap1 sep1 sep2 sep4 — Flower meristems behave like inflorescence meristems and continuously elaborate new meristems, resulting in the cauliflower phenotype. Eventually flowers resembling those of ap1 single mutants eventually appear and set seeds.
- sep1 — Non-described subtle phenotype.
- sep1 sep2 se3/+ sep4 — Early flower mutant phenotypes are lessened in later-arising flowers which appear more normal whilst still displaying significant perturbations of organ development.
- sep1 sep2 se3/+ sep4 — Gynoecium often supported by an elongated gynophore.
- sep1 sep2 se3/+ sep4 — Many flowers display a loss of fourth whorl determinancy.
- sep1 sep2 se3/+ sep4 — Profound changes in early arising flowers. Both organ numbers and organ identity are affected in a highly variable manner.
- sep1 sep2 se3/+ sep4 — Stellate trichomes are frequently observed on carpels (never on wild-type).
- sep1 sep2 sep3 — Adaxial epidermal cells have a slightly irregular edge, indicating a partial adoption of leaf fate.
- sep1 sep2 sep3 — All flower organs resemble sepals. The second whorl has four green sepal-like organs (instead of four white petals) which are differentiated of interspersed stomata and the conversion of nearly all of the cells into sepal cells. Sepals replace stamens in the third whorl. The fourth whorl is a reiteration of whorls 1, 2 and 3.
- sep1 sep2 sep3 sep4 — All flower organs are converted to leaf-like organs, most strikingly on their adaxial surface. Abaxial epidermal cells are made up of a mixture of leaf- and sepal-like characteristics. Leaf characteristics include an abundance of branched trichomes.
- sep1 sep2 sep3/+ — Normal flowers apart from a reduction in the number of stamens.
- sep1 sep2 sep4 — Adaxial surface of first whorl organs are unaffected.
Functional Keywords
Literature and News
- B and C floral organ identity functions require SEPALLATA MADS-box genes. DOI: 10.1038/35012103 ; PMID: 10821278
- Family of MADS-Box genes expressed early in male and female reproductive structures of monterey pine. DOI: 10.1104/pp.117.1.55 ; PMID: 9576774
- Specific interactions between the K domains of AG and AGLs, members of the MADS domain family of DNA binding proteins. DOI: 10.1046/j.1365-313x.1997.12050999.x ; PMID: 9418042
- Conifer homologues to genes that control floral development in angiosperms. DOI: 10.1007/BF00019179 ; PMID: 7865797
- AGL1-AGL6, an Arabidopsis gene family with similarity to floral homeotic and transcription factor genes. DOI: 10.1101/gad.5.3.484 ; PMID: 1672119
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- HUA1, a regulator of stamen and carpel identities in Arabidopsis, codes for a nuclear RNA binding protein. DOI: 10.1105/tpc.010201 ; PMID: 11595801
- APETALA1 and SEPALLATA3 interact to promote flower development. DOI: 10.1046/j.1365-313x.2001.2641042.x ; PMID: 11439126
- ATX-1, an Arabidopsis homolog of trithorax, activates flower homeotic genes. DOI: 10.1016/s0960-9822(03)00243-4 ; PMID: 12699618
- The MADS box gene FBP2 is required for SEPALLATA function in petunia. DOI: 10.1105/tpc.010280 ; PMID: 12671087
- Positional cloning of the wheat vernalization gene VRN1. DOI: 10.1073/pnas.0937399100 ; PMID: 12730378
- Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. DOI: 10.1105/tpc.011544 ; PMID: 12837945
- MADS-box protein complexes control carpel and ovule development in Arabidopsis. DOI: 10.1105/tpc.015123 ; PMID: 14555696
- The major clades of MADS-box genes and their role in the development and evolution of flowering plants. DOI: 10.1016/s1055-7903(03)00207-0 ; PMID: 14615187
- Molecular population genetics of redundant floral-regulatory genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msh261 ; PMID: 15371526
- SEPALLATA gene diversification: brave new whorls. DOI: 10.1016/j.tplants.2005.07.008 ; PMID: 16099195
- The SEP4 gene of Arabidopsis thaliana functions in floral organ and meristem identity. DOI: 10.1016/j.cub.2004.10.028 ; PMID: 15530395
- Four orchid (Oncidium Gower Ramsey) AP1/AGL9-like MADS box genes show novel expression patterns and cause different effects on floral transition and formation in Arabidopsis thaliana. DOI: 10.1093/pcp/pcp087 ; PMID: 19541596
- Ectopic expression of a hyacinth AGL6 homolog caused earlier flowering and homeotic conversion in Arabidopsis. DOI: 10.1007/s11427-007-0083-4 ; PMID: 17879068
- VERDANDI is a direct target of the MADS domain ovule identity complex and affects embryo sac differentiation in Arabidopsis. DOI: 10.1105/tpc.109.068627 ; PMID: 20581305
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis. DOI: 10.1111/j.1365-313X.2012.05074.x ; PMID: 22694359
- Arabidopsis SEPALLATA proteins differ in cooperative DNA-binding during the formation of floral quartet-like complexes. DOI: 10.1093/nar/gku755 ; PMID: 25183521
- Degradation of class E MADS-domain transcription factors in Arabidopsis by a phytoplasmal effector, phyllogen. DOI: 10.1080/15592324.2015.1042635 ; PMID: 26179462
- Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes. DOI: 10.1093/jxb/erw046 ; PMID: 26956504
- FAR-RED ELONGATED HYPOCOTYL3 activates SEPALLATA2 but inhibits CLAVATA3 to regulate meristem determinacy and maintenance in Arabidopsis. DOI: 10.1073/pnas.1602960113 ; PMID: 27469166
- An Evolutionary Framework for Carpel Developmental Control Genes. DOI: 10.1093/molbev/msw229 ; PMID: 28049761
- INCURVATA11 and CUPULIFORMIS2 Are Redundant Genes That Encode Epigenetic Machinery Components in Arabidopsis. DOI: 10.1105/tpc.18.00300 ; PMID: 29915151
- AGL1-AGL6, an Arabidopsis gene family with similarity to floral homeotic and transcription factor genes. DOI: 10.1101/gad.5.3.484 ; PMID: 1672119
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: F4KB90
- EMBL: CP002688
- AlphaFoldDB: F4KB90
- EnsemblPlants: AT5G15800.2
- Gramene: AT5G15800.2
- ExpressionAtlas: AT5G15800
- InterPro: IPR002100, IPR002487, IPR033896
Sequences
cDNA Sequence
- >AT5G15800.2
ATCACACGTGCTTAAAGAGAGCGTGGGAATGAAAGTAAAGAAGAATAAAGAAGCAGAGAGATGGGCTAGAAATGAGAAAACACACCAAACCCTAACCTCACCCTCACACATTTCTTATCTTTTGCTCTCAATAGATTCCATTGATTCAAAACAAAATTTTCATTAAGATTTCACAACCTCCACACACTTCCAAACACAATTAAAGAGAGGAAAAAGAATCAATAACCCTATAAATAAAAAATCAGACAAACAGAAGTTTCCTCTTCTTCTTCCTTAAGCTAGTACCTTTTGTTCTTGAAATTAGGGTTAATTTCTTTTTTCCAAATACCATCAATTCTCCAGACCATAAAAACTCAAAAAGATCAGATCTTTCCTCTGAAAAAGAGATACCCAACTTATGTTTTTGTGTGTCTGTATATAGATAAACATTACATACCCATATTTGTGTATAGACATAAAAAGTGGAAATTAAGGTAACAAAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGATTTAGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGAACAGAATGTTACCTACGCGCATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAAATGGGTTGCTGTTTTGGTGATGATGATGATGATGACAGGTATGATAATCCGGTATGCTCAGAGCAAATAACTGCGACAACCCAAGCTCAGGCGCAGCAGGGAAACGGTTACATCCCGGGGTGGATGCTCTGAGAGTCATGTGCTGTGTTAAAGCTCACCAACAAAAGATCTTTTATATATATAAAAGTATAGACACAAGACTTTGGATTTGTAGACATAAGTGGCTATATATAATGGTCCTGAGGATCTTCAAGACATTTGTATCTTTTGGGAATCCTTGCTTATATTAAGAATTCAAATGTGTGGAACTTGTTTTAACACTGAACCATGACACTGGTTTATTATCATGTAATGAGAAACATTTGGGTTACAATGTGATCTCTCCTTGACCC - >AT5G15800.1
ATCACACGTGCTTAAAGAGAGCGTGGGAATGAAAGTAAAGAAGAATAAAGAAGCAGAGAGATGGGCTAGAAATGAGAAAACACACCAAACCCTAACCTCACCCTCACACATTTCTTATCTTTTGCTCTCAATAGATTCCATTGATTCAAAACAAAATTTTCATTAAGATTTCACAACCTCCACACACTTCCAAACACAATTAAAGAGAGGAAAAAGAATCAATAACCCTATAAATAAAAAATCAGACAAACAGAAGTTTCCTCTTCTTCTTCCTTAAGCTAGTACCTTTTGTTCTTGAAATTAGGGTTAATTTCTTTTTTCCAAATACCATCAATTCTCCAGACCATAAAAACTCAAAAAGATCAGATCTTTCCTCTGAAAAAGAGATACCCAACTTATGTTTTTGTGTGTCTGTATATAGATAAACATTACATACCCATATTTGTGTATAGACATAAAAAGTGGAAATTAAGGTAACAAAAAGAAATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAAATCAACAGACAAGTAACGTTTGCAAAGCGTAGGAACGGTTTGTTGAAGAAAGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGAAAGCTCTATGAGTTTTGCAGCTCCTCAAACATGCTCAAGACACTTGATCGGTACCAGAAATGCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAGAAATCTTCTTGGGGAGGATTTAGGACCTTTGAATTCAAAGGAGTTAGAGCAGCTTGAGCGTCAACTGGACGGCTCTCTCAAGCAAGTTCGGTCCATCAAGACACAGTACATGCTTGACCAGCTCTCGGATCTTCAAAATAAAGAGCAAATGTTGCTTGAAACCAATAGAGCTTTGGCAATGAAGCTGGATGATATGATTGGTGTGAGAAGTCATCATATGGGAGGAGGAGGAGGATGGGAAGGTGGTGAACAGAATGTTACCTACGCGCATCATCAAGCTCAGTCTCAGGGACTATACCAGCCTCTTGAATGCAATCCAACTCTGCAAATGGGTTGCTGTTTTGGTGATGATGATGATGATGACAGGTATGATAATCCGGTATGCTCAGAGCAAATAACTGCGACAACCCAAGCTCAGGCGCAGCAGGGAAACGGTTACATCCCGGGGTGGATGCTCTGAGAGTCATGTGCTGTGTTAAAGCTCACCAACAAAAGATCTTTTATATATATAAAAGTATAGACACAAGACTTTGGATTTGTAGACATAAGTGGCTATATATAATGGTCCTGAGGATCTTCAAGACATTTGTATCTTTTGGGAATCCTTGCTTATATTAAGAATTCAAATGTGTGGAACTTGTTTTAACACTGAACCATGACACTGGTTTATTATCATGTAATGAGAAACATTTGGGTTACAATGTGATCTCTCCTTGACCC
CDS Sequence
Protein Sequence